From b88bf087404ba7ad02752c7f0a4b409bea886c97 Mon Sep 17 00:00:00 2001
From: jcannon-gplates <john.cannon@sydney.edu.au>
Date: Mon, 13 Jan 2025 09:24:55 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20GPlates/?=
 =?UTF-8?q?gplately@678b2ab538505a304a43d9b99a6d8f539639a589=20?=
 =?UTF-8?q?=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 dev-doc/01-GettingStarted.html                | 11 +++---
 dev-doc/02-PlateReconstructions.html          | 31 ++++++++--------
 dev-doc/03-WorkingWithPoints.html             | 15 ++++----
 dev-doc/04-VelocityBasics.html                | 27 +++++++-------
 dev-doc/05-WorkingWithFeatureGeometries.html  | 21 +++++------
 dev-doc/06-Rasters.html                       | 17 ++++-----
 dev-doc/07-WorkingWithPlateTectonicStats.html | 23 ++++++------
 dev-doc/08-PredictingSlabFlux.html            | 15 ++++----
 .../09-CreatingMotionPathsAndFlowlines.html   | 35 ++++++++++---------
 dev-doc/10-SeafloorGrids.html                 | 17 ++++-----
 dev-doc/11-AndesFluxes.html                   | 27 +++++++-------
 dev-doc/pygplates.html                        |  4 ++-
 12 files changed, 128 insertions(+), 115 deletions(-)

diff --git a/dev-doc/01-GettingStarted.html b/dev-doc/01-GettingStarted.html
index c0041761..18ecf0a8 100644
--- a/dev-doc/01-GettingStarted.html
+++ b/dev-doc/01-GettingStarted.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7536,11 +7537,11 @@ <h1 id="1---Getting-Started">1 - Getting Started<a class="anchor-link" href="#1-
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
diff --git a/dev-doc/02-PlateReconstructions.html b/dev-doc/02-PlateReconstructions.html
index 0e33741f..94949f02 100644
--- a/dev-doc/02-PlateReconstructions.html
+++ b/dev-doc/02-PlateReconstructions.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7535,19 +7536,19 @@ <h1 id="2---Plate-Reconstructions">2 - Plate Reconstructions<a class="anchor-lin
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">from</span> <span class="nn">gplately</span> <span class="kn">import</span> <span class="n">pygplates</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">cartopy.mpl.gridliner</span> <span class="k">as</span> <span class="nn">grd</span>
-
-<span class="kn">from</span> <span class="nn">matplotlib.patches</span> <span class="kn">import</span> <span class="n">Patch</span>
-<span class="kn">from</span> <span class="nn">matplotlib.patches</span> <span class="kn">import</span> <span class="n">FancyArrowPatch</span>
-<span class="kn">from</span> <span class="nn">matplotlib.lines</span> <span class="kn">import</span> <span class="n">Line2D</span>
-
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">gplately</span><span class="w"> </span><span class="kn">import</span> <span class="n">pygplates</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">glob</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.mpl.gridliner</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">grd</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.patches</span><span class="w"> </span><span class="kn">import</span> <span class="n">Patch</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.patches</span><span class="w"> </span><span class="kn">import</span> <span class="n">FancyArrowPatch</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.lines</span><span class="w"> </span><span class="kn">import</span> <span class="n">Line2D</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -8053,7 +8054,7 @@ <h3 id="Define-the-PlotTopologies-object">Define the <code>PlotTopologies</code>
 <div class="jp-InputPrompt jp-InputArea-prompt">In [13]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">moviepy.editor</span> <span class="k">as</span> <span class="nn">mpy</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">moviepy.editor</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">mpy</span>
 
 <span class="n">frame_list</span> <span class="o">=</span> <span class="p">[]</span>
 
@@ -8064,7 +8065,7 @@ <h3 id="Define-the-PlotTopologies-object">Define the <code>PlotTopologies</code>
 <span class="n">clip</span> <span class="o">=</span> <span class="n">mpy</span><span class="o">.</span><span class="n">ImageSequenceClip</span><span class="p">(</span><span class="n">frame_list</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
 <span class="n">clip</span><span class="o">.</span><span class="n">write_gif</span><span class="p">(</span><span class="s1">'/tmp/subd_mor_boundary_features.gif'</span><span class="p">)</span>
 
-<span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">Image</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">IPython.display</span><span class="w"> </span><span class="kn">import</span> <span class="n">Image</span>
 <span class="nb">print</span><span class="p">(</span><span class="s1">'The movie will show up in a few seconds. Please be patient...'</span><span class="p">)</span>
 <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="s1">'/tmp/subd_mor_boundary_features.gif'</span><span class="p">,</span><span class="s1">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
     <span class="n">display</span><span class="p">(</span><span class="n">Image</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">(),</span> <span class="nb">format</span><span class="o">=</span><span class="s1">'png'</span><span class="p">,</span> <span class="n">width</span> <span class="o">=</span> <span class="mi">2000</span><span class="p">,</span> <span class="n">height</span> <span class="o">=</span> <span class="mi">500</span><span class="p">))</span>
diff --git a/dev-doc/03-WorkingWithPoints.html b/dev-doc/03-WorkingWithPoints.html
index 5352ecbb..8de03906 100644
--- a/dev-doc/03-WorkingWithPoints.html
+++ b/dev-doc/03-WorkingWithPoints.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7537,12 +7538,12 @@ <h1 id="3---Working-with-points">3 - Working with points<a class="anchor-link" h
 <div class="jp-InputPrompt jp-InputArea-prompt">In [ ]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7797,7 +7798,7 @@ <h2 id="Reconstruct-PBDB-data-with-GPlately">Reconstruct PBDB data with GPlately
 <div class="jp-InputPrompt jp-InputArea-prompt">In [8]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">stripy</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">stripy</span>
 
 <span class="n">mesh</span> <span class="o">=</span> <span class="n">stripy</span><span class="o">.</span><span class="n">spherical_meshes</span><span class="o">.</span><span class="n">icosahedral_mesh</span><span class="p">(</span><span class="n">refinement_levels</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">tree</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 </pre></div>
diff --git a/dev-doc/04-VelocityBasics.html b/dev-doc/04-VelocityBasics.html
index 20a7eb12..1279f473 100644
--- a/dev-doc/04-VelocityBasics.html
+++ b/dev-doc/04-VelocityBasics.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7529,15 +7530,15 @@ <h1 id="4---Velocity-Basics">4 - Velocity Basics<a class="anchor-link" href="#4-
 <div class="jp-InputPrompt jp-InputArea-prompt">In [ ]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">tempfile</span>
-
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">matplotlib.colors</span> <span class="kn">import</span> <span class="n">Normalize</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">tempfile</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.colors</span><span class="w"> </span><span class="kn">import</span> <span class="n">Normalize</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7906,7 +7907,7 @@ <h3 id="Visualising-Points-object-velocity-data:-Scatterplot">Visualising <code>
 <div class="jp-InputPrompt jp-InputArea-prompt">In [10]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
     <span class="c1"># Get all point velocities and their magnitudes</span>
     <span class="n">vel_x</span><span class="p">,</span> <span class="n">vel_y</span> <span class="o">=</span> <span class="n">gpts</span><span class="o">.</span><span class="n">plate_velocity</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">time</span><span class="p">))</span>
     <span class="n">vel_mag</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">hypot</span><span class="p">(</span><span class="n">vel_x</span><span class="p">,</span> <span class="n">vel_y</span><span class="p">)</span>
@@ -7955,7 +7956,7 @@ <h3 id="Visualising-Points-object-velocity-data:-Scatterplot">Visualising <code>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
 <div class="highlight hl-ipython3"><pre><span></span><span class="k">try</span><span class="p">:</span>
-    <span class="kn">import</span> <span class="nn">moviepy.editor</span> <span class="k">as</span> <span class="nn">mpy</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">moviepy.editor</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">mpy</span>
 
     <span class="n">mpy_available</span> <span class="o">=</span> <span class="kc">True</span>
 <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
@@ -7989,7 +7990,7 @@ <h3 id="Visualising-Points-object-velocity-data:-Scatterplot">Visualising <code>
             <span class="p">)</span>
         <span class="p">)</span>
 
-        <span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">Image</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">IPython.display</span><span class="w"> </span><span class="kn">import</span> <span class="n">Image</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">'The movie will show up in a few seconds. Please be patient...'</span><span class="p">)</span>
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span>
             <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
@@ -8215,7 +8216,7 @@ <h2 id="Plotting-a-velocity-streamplot">Plotting a velocity streamplot<a class="
 <div class="jp-InputPrompt jp-InputArea-prompt">In [15]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
     <span class="n">vel_x</span><span class="p">,</span> <span class="n">vel_y</span> <span class="o">=</span> <span class="n">gpts</span><span class="o">.</span><span class="n">plate_velocity</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">time</span><span class="p">))</span>
     <span class="n">vel_x</span> <span class="o">*=</span> <span class="mi">10</span>
     <span class="n">vel_y</span> <span class="o">*=</span> <span class="mi">10</span>
diff --git a/dev-doc/05-WorkingWithFeatureGeometries.html b/dev-doc/05-WorkingWithFeatureGeometries.html
index 82bf353f..3a1bcf68 100644
--- a/dev-doc/05-WorkingWithFeatureGeometries.html
+++ b/dev-doc/05-WorkingWithFeatureGeometries.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7550,14 +7551,14 @@ <h1 id="5---Working-With-Feature-Geometries">5 - Working With Feature Geometries
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">gplately</span>
-
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">gplately.pygplates</span> <span class="k">as</span> <span class="nn">pygplates</span>
-<span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately.pygplates</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pygplates</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">glob</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7830,7 +7831,7 @@ <h3 id="Plotting-Shapely-Polylines">Plotting Shapely Polylines<a class="anchor-l
 <div class="jp-InputPrompt jp-InputArea-prompt">In [7]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">moviepy.editor</span> <span class="k">as</span> <span class="nn">mpy</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">moviepy.editor</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">mpy</span>
 
 <span class="n">frame_list</span> <span class="o">=</span> <span class="p">[]</span>
 
@@ -7840,7 +7841,7 @@ <h3 id="Plotting-Shapely-Polylines">Plotting Shapely Polylines<a class="anchor-l
 <span class="n">clip</span> <span class="o">=</span> <span class="n">mpy</span><span class="o">.</span><span class="n">ImageSequenceClip</span><span class="p">(</span><span class="n">frame_list</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
 <span class="n">clip</span><span class="o">.</span><span class="n">write_gif</span><span class="p">(</span><span class="s1">'/tmp/seafloor_fabric_movie.gif'</span><span class="p">)</span>
 
-<span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">Image</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">IPython.display</span><span class="w"> </span><span class="kn">import</span> <span class="n">Image</span>
 <span class="nb">print</span><span class="p">(</span><span class="s1">'The movie will show up in a few seconds. Please be patient...'</span><span class="p">)</span>
 <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="s1">'/tmp/seafloor_fabric_movie.gif'</span><span class="p">,</span><span class="s1">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
     <span class="n">display</span><span class="p">(</span><span class="n">Image</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">(),</span> <span class="nb">format</span><span class="o">=</span><span class="s1">'png'</span><span class="p">,</span> <span class="n">width</span> <span class="o">=</span> <span class="mi">3000</span><span class="p">,</span> <span class="n">height</span> <span class="o">=</span> <span class="mi">1000</span><span class="p">))</span>
diff --git a/dev-doc/06-Rasters.html b/dev-doc/06-Rasters.html
index 726dfd05..413e50ed 100644
--- a/dev-doc/06-Rasters.html
+++ b/dev-doc/06-Rasters.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7546,13 +7547,13 @@ <h1 id="6---Working-with-Rasters">6 - Working with Rasters<a class="anchor-link"
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
 
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span><span class="p">,</span> <span class="n">PresentDayRasterManager</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span><span class="p">,</span> <span class="n">PresentDayRasterManager</span>
 </pre></div>
 </div>
 </div>
@@ -7831,7 +7832,7 @@ <h2 id="Downloading-general-rasters">Downloading general rasters<a class="anchor
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
 <div class="highlight hl-ipython3"><pre><span></span><span class="c1"># This returns ETOPO1 as a `Raster` object.</span>
-<span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">image</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">image</span>
 <span class="n">raster_manager</span> <span class="o">=</span> <span class="n">PresentDayRasterManager</span><span class="p">()</span>
 <span class="n">etopo</span> <span class="o">=</span> <span class="n">gplately</span><span class="o">.</span><span class="n">Raster</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">image</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">raster_manager</span><span class="o">.</span><span class="n">get_raster</span><span class="p">(</span><span class="s2">"ETOPO1_tif"</span><span class="p">)))</span>
 <span class="n">etopo</span><span class="o">.</span><span class="n">lats</span> <span class="o">=</span> <span class="n">etopo</span><span class="o">.</span><span class="n">lats</span><span class="p">[::</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
@@ -8378,7 +8379,7 @@ <h2 id="Linear-interpolation">Linear interpolation<a class="anchor-link" href="#
 <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s2">"</span><span class="si">%i</span><span class="s2"> Ma"</span> <span class="o">%</span><span class="k">time</span>)
 
 <span class="c1"># Custom legend</span>
-<span class="kn">from</span> <span class="nn">matplotlib.lines</span> <span class="kn">import</span> <span class="n">Line2D</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.lines</span><span class="w"> </span><span class="kn">import</span> <span class="n">Line2D</span>
 
 <span class="n">handles</span> <span class="o">=</span> <span class="p">[</span>
     <span class="n">Line2D</span><span class="p">([</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s2">"red"</span><span class="p">),</span>
diff --git a/dev-doc/07-WorkingWithPlateTectonicStats.html b/dev-doc/07-WorkingWithPlateTectonicStats.html
index 6fc4e04c..240f85db 100644
--- a/dev-doc/07-WorkingWithPlateTectonicStats.html
+++ b/dev-doc/07-WorkingWithPlateTectonicStats.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7541,15 +7542,15 @@ <h1 id="7---Working-with-Plate-Tectonic-Stats">7 - Working with Plate Tectonic S
 <div class="jp-InputPrompt jp-InputArea-prompt">In [ ]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">gplately.pygplates</span> <span class="k">as</span> <span class="nn">pygplates</span>
-<span class="kn">from</span> <span class="nn">gplately</span> <span class="kn">import</span> <span class="n">ptt</span>
-<span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately.pygplates</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pygplates</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">gplately</span><span class="w"> </span><span class="kn">import</span> <span class="n">ptt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">glob</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7601,7 +7602,7 @@ <h1 id="7---Working-with-Plate-Tectonic-Stats">7 - Working with Plate Tectonic S
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
 <div class="highlight hl-ipython3"><pre><span></span><span class="c1"># Function to obtain plate tectonic stats at a specific reconstruction time</span>
-<span class="k">def</span> <span class="nf">get_plate_tectonic_stats</span><span class="p">(</span><span class="n">model</span><span class="p">,</span> <span class="n">reconstruction_time</span><span class="p">):</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_plate_tectonic_stats</span><span class="p">(</span><span class="n">model</span><span class="p">,</span> <span class="n">reconstruction_time</span><span class="p">):</span>
     
     <span class="c1"># PlotTopologies collects plate boundaries from a plate model</span>
     <span class="n">gplot</span> <span class="o">=</span> <span class="n">gplately</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">PlotTopologies</span><span class="p">(</span><span class="n">model</span><span class="p">,</span> <span class="n">time</span><span class="o">=</span><span class="n">reconstruction_time</span><span class="p">)</span>
@@ -7800,7 +7801,7 @@ <h2 id="Plotting-plate-tectonic-stats">Plotting plate tectonic stats<a class="an
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
 <div class="highlight hl-ipython3"><pre><span></span><span class="c1"># Smooth data with a Gaussian filter</span>
-<span class="kn">from</span> <span class="nn">scipy.ndimage</span> <span class="kn">import</span> <span class="n">gaussian_filter</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scipy.ndimage</span><span class="w"> </span><span class="kn">import</span> <span class="n">gaussian_filter</span>
 
 <span class="c1"># Get stats from the data frame</span>
 <span class="n">reconstruction_times</span> <span class="o">=</span> <span class="n">muller19_df</span><span class="p">[</span><span class="s1">'Time (Ma)'</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span>
diff --git a/dev-doc/08-PredictingSlabFlux.html b/dev-doc/08-PredictingSlabFlux.html
index 01f64e82..13c93b77 100644
--- a/dev-doc/08-PredictingSlabFlux.html
+++ b/dev-doc/08-PredictingSlabFlux.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7536,11 +7537,11 @@ <h4 id="References">References<a class="anchor-link" href="#References">¶</a></
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
 <div class="highlight hl-ipython3"><pre><span></span><span class="o">%</span><span class="k">matplotlib</span> inline
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">scipy.ndimage</span> <span class="kn">import</span> <span class="n">gaussian_filter</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">scipy.ndimage</span><span class="w"> </span><span class="kn">import</span> <span class="n">gaussian_filter</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7605,7 +7606,7 @@ <h2 id="Get-kinematic-data">Get kinematic data<a class="anchor-link" href="#Get-
 <div class="jp-InputPrompt jp-InputArea-prompt">In [3]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_subduction_volume_rate</span><span class="p">(</span><span class="n">pmm_model</span><span class="p">,</span> <span class="n">model</span><span class="p">,</span> <span class="n">reconstruction_time</span><span class="p">):</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">get_subduction_volume_rate</span><span class="p">(</span><span class="n">pmm_model</span><span class="p">,</span> <span class="n">model</span><span class="p">,</span> <span class="n">reconstruction_time</span><span class="p">):</span>
         
     <span class="c1"># calculate subduction convergence with gplately</span>
     <span class="n">subduction_data</span> <span class="o">=</span> <span class="n">model</span><span class="o">.</span><span class="n">tessellate_subduction_zones</span><span class="p">(</span>
@@ -7728,7 +7729,7 @@ <h3 id="Parallel-processing">Parallel processing<a class="anchor-link" href="#Pa
 <div class="jp-InputPrompt jp-InputArea-prompt">In [5]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">from</span> <span class="nn">joblib</span> <span class="kn">import</span> <span class="n">Parallel</span><span class="p">,</span> <span class="n">delayed</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">joblib</span><span class="w"> </span><span class="kn">import</span> <span class="n">Parallel</span><span class="p">,</span> <span class="n">delayed</span>
 
 <span class="n">reconstruction_times</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">231</span><span class="p">)</span>
 
diff --git a/dev-doc/09-CreatingMotionPathsAndFlowlines.html b/dev-doc/09-CreatingMotionPathsAndFlowlines.html
index cda46d21..67a19838 100644
--- a/dev-doc/09-CreatingMotionPathsAndFlowlines.html
+++ b/dev-doc/09-CreatingMotionPathsAndFlowlines.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7532,22 +7533,22 @@ <h1 id="9---Creating-Motion-Paths-and-Flowlines">9 - Creating Motion Paths and F
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">gplately</span>
-
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">pygplates</span>
-<span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">matplotlib.axes</span> <span class="k">as</span> <span class="nn">axs</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">matplotlib</span>
-<span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">image</span>
-<span class="kn">from</span> <span class="nn">cartopy.mpl.ticker</span> <span class="kn">import</span> <span class="n">LongitudeFormatter</span><span class="p">,</span> <span class="n">LatitudeFormatter</span>
-<span class="kn">import</span> <span class="nn">cartopy.feature</span> <span class="k">as</span> <span class="nn">cfeature</span>
-<span class="kn">from</span> <span class="nn">mpl_toolkits.axes_grid1</span> <span class="kn">import</span> <span class="n">make_axes_locatable</span>
-<span class="kn">from</span> <span class="nn">shapely.geometry</span> <span class="kn">import</span> <span class="n">LineString</span>
-<span class="kn">import</span> <span class="nn">geopandas</span> <span class="k">as</span> <span class="nn">gpd</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span><span class="p">,</span> <span class="n">PresentDayRasterManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pygplates</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">glob</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.axes</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">axs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">image</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">cartopy.mpl.ticker</span><span class="w"> </span><span class="kn">import</span> <span class="n">LongitudeFormatter</span><span class="p">,</span> <span class="n">LatitudeFormatter</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.feature</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">cfeature</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">mpl_toolkits.axes_grid1</span><span class="w"> </span><span class="kn">import</span> <span class="n">make_axes_locatable</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">shapely.geometry</span><span class="w"> </span><span class="kn">import</span> <span class="n">LineString</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">geopandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">gpd</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span><span class="p">,</span> <span class="n">PresentDayRasterManager</span>
 
 <span class="o">%</span><span class="k">matplotlib</span> inline
 </pre></div>
@@ -7661,7 +7662,7 @@ <h4 id="Step-plots-of-rates-of-motion">Step plots of rates of motion<a class="an
 <div class="jp-InputPrompt jp-InputArea-prompt">In [4]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">image</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib</span><span class="w"> </span><span class="kn">import</span> <span class="n">image</span>
 <span class="n">raster_manager</span> <span class="o">=</span> <span class="n">PresentDayRasterManager</span><span class="p">()</span>
 <span class="n">etopo_tif_img</span> <span class="o">=</span> <span class="n">gplately</span><span class="o">.</span><span class="n">Raster</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">image</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">raster_manager</span><span class="o">.</span><span class="n">get_raster</span><span class="p">(</span><span class="s2">"ETOPO1_tif"</span><span class="p">)))</span>
 <span class="n">etopo_tif_img</span><span class="o">.</span><span class="n">lats</span> <span class="o">=</span> <span class="n">etopo_tif_img</span><span class="o">.</span><span class="n">lats</span><span class="p">[::</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
diff --git a/dev-doc/10-SeafloorGrids.html b/dev-doc/10-SeafloorGrids.html
index 7445ee79..37e01fa0 100644
--- a/dev-doc/10-SeafloorGrids.html
+++ b/dev-doc/10-SeafloorGrids.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7530,13 +7531,13 @@ <h3 id="Citation:">Citation:<a class="anchor-link" href="#Citation:">¶</a></h3>
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">gplately</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
 
-<span class="kn">import</span> <span class="nn">gplately.pygplates</span> <span class="k">as</span> <span class="nn">pygplates</span>
-<span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately.pygplates</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pygplates</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">glob</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7997,8 +7998,8 @@ <h4 id="Reconstruct-by-topologies">Reconstruct by topologies<a class="anchor-lin
 <div class="jp-InputPrompt jp-InputArea-prompt">In [ ]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">datetime</span>
-<span class="kn">import</span> <span class="nn">time</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">datetime</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">time</span>
 
 
 <span class="n">start</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">time</span><span class="p">()</span>
diff --git a/dev-doc/11-AndesFluxes.html b/dev-doc/11-AndesFluxes.html
index f3be584f..2baabddd 100644
--- a/dev-doc/11-AndesFluxes.html
+++ b/dev-doc/11-AndesFluxes.html
@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7529,16 +7530,16 @@ <h3 id="Citation:">Citation:<a class="anchor-link" href="#Citation:">¶</a></h3>
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">gplately.pygplates</span> <span class="k">as</span> <span class="nn">pygplates</span>
-<span class="kn">from</span> <span class="nn">gplately</span> <span class="kn">import</span> <span class="n">ptt</span>
-<span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">sys</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately.pygplates</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pygplates</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">gplately</span><span class="w"> </span><span class="kn">import</span> <span class="n">ptt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">glob</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 
 <span class="n">anchor_plate_id</span> <span class="o">=</span> <span class="mi">0</span>
 
@@ -7609,7 +7610,7 @@ <h3 id="Define-the-function-to-calculate-and-filter-subduction-zone-stats-for-So
 <div class="highlight hl-ipython3"><pre><span></span><span class="c1"># We are only interested in the latitude -55 and 5 in this notebook. </span>
 <span class="n">lat_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="o">-</span><span class="mi">55</span><span class="p">,</span><span class="mi">5</span><span class="p">,</span><span class="mf">0.1</span><span class="p">)</span>
 
-<span class="k">def</span> <span class="nf">get_south_america_subduction_zone_data</span><span class="p">(</span><span class="n">r12n_time</span><span class="p">):</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">get_south_america_subduction_zone_data</span><span class="p">(</span><span class="n">r12n_time</span><span class="p">):</span>
 <span class="w">    </span><span class="sd">"""we are only interesed in the South America subduction zone in this notebook</span>
 <span class="sd">        filter and keep the South America subduction zone data only</span>
 <span class="sd">    </span>
@@ -7728,7 +7729,7 @@ <h3 id="Plot-the-South-America-subduction-zone-sample-points">Plot the South Ame
 <div class="jp-InputPrompt jp-InputArea-prompt">In [5]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_extent_from_data</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">extent_buffer</span><span class="o">=</span><span class="mi">2</span><span class="p">):</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">get_extent_from_data</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">extent_buffer</span><span class="o">=</span><span class="mi">2</span><span class="p">):</span>
     <span class="n">x0</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">lon</span><span class="o">.</span><span class="n">min</span><span class="p">()</span><span class="o">-</span><span class="n">extent_buffer</span>
     <span class="k">if</span> <span class="n">x0</span><span class="o">&lt;-</span><span class="mi">180</span><span class="p">:</span> <span class="n">x0</span><span class="o">=</span><span class="mi">360</span><span class="o">+</span><span class="n">x0</span>
     <span class="n">x1</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">lon</span><span class="o">.</span><span class="n">max</span><span class="p">()</span><span class="o">+</span><span class="n">extent_buffer</span>
@@ -7854,7 +7855,7 @@ <h3 id="plot-the-area-flux-and-volume-flux">plot the area flux and volume flux<a
 <div class="jp-InputPrompt jp-InputArea-prompt">In [7]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">from</span> <span class="nn">scipy.ndimage</span> <span class="kn">import</span> <span class="n">uniform_filter1d</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">scipy.ndimage</span><span class="w"> </span><span class="kn">import</span> <span class="n">uniform_filter1d</span>
 
 <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span><span class="mi">4</span><span class="p">),</span> <span class="n">dpi</span><span class="o">=</span><span class="mi">100</span><span class="p">)</span>
 <span class="n">ax</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
diff --git a/dev-doc/pygplates.html b/dev-doc/pygplates.html
index 03369574..bc2415e1 100644
--- a/dev-doc/pygplates.html
+++ b/dev-doc/pygplates.html
@@ -667,7 +667,7 @@ <h2 id="returns">Returns</h2>
 <p><strong>init</strong>(rotation_features, [reconstruction_tree_cache_size=150], [extend_total_reconstruction_poles_to_distant_past=False], [default_anchor_plate_id=0])
 Create from rotation feature collection(s) and/or rotation filename(s).</p>
 <p>:param rotation_features: A rotation feature collection, or rotation filename, or rotation feature, or sequence of rotation features, or a sequence (eg, <code>list</code> or <code>tuple</code>) of any combination of those four types
-:type rotation_features: :class:<code><a title="gplately.pygplates.FeatureCollection" href="#gplately.pygplates.FeatureCollection">FeatureCollection</a></code>, or string, or :class:<code><a title="gplately.pygplates.Feature" href="#gplately.pygplates.Feature">Feature</a></code>, or sequence of :class:<code><a title="gplately.pygplates.Feature" href="#gplately.pygplates.Feature">Feature</a></code>, or sequence of any combination of those four types
+:type rotation_features: :class:<code><a title="gplately.pygplates.FeatureCollection" href="#gplately.pygplates.FeatureCollection">FeatureCollection</a></code>, or string/<code>os.PathLike</code>, or :class:<code><a title="gplately.pygplates.Feature" href="#gplately.pygplates.Feature">Feature</a></code>, or sequence of :class:<code><a title="gplately.pygplates.Feature" href="#gplately.pygplates.Feature">Feature</a></code>, or sequence of any combination of those four types
 :param reconstruction_tree_cache_size: Number of reconstruction trees to cache internally. Defaults to 150.
 :type reconstruction_tree_cache_size: int
 :param extend_total_reconstruction_poles_to_distant_past: extend each moving plate sequence back infinitely far into the distant past such that reconstructed geometries will not snap back to their present day positions when the reconstruction time is older than the oldest times specified in the rotation features (defaults to <code>False</code>)
@@ -688,6 +688,8 @@ <h2 id="returns">Returns</h2>
 Added <em>extend_total_reconstruction_poles_to_distant_past</em> argument and removed <em>clone_rotation_features</em> argument.</p>
 <p>!!! versionchanged "Changed in version:&ensp;0.26"
 Added <em>default_anchor_plate_id</em> argument.</p>
+<p>!!! versionchanged "Changed in version:&ensp;0.44"
+Filenames can be <code>os.PathLike &lt;https://docs.python.org/3/library/os.html#os.PathLike&gt;</code><em> (such as <code>pathlib.Path &lt;https://docs.python.org/3/library/pathlib.html&gt;</code></em>) in addition to strings.</p>
 <p><strong>init</strong>(rotation_model, [reconstruction_tree_cache_size=2], [default_anchor_plate_id])
 Use an existing rotation model but adapt it with a potentially different cache size and/or default anchor plate ID.</p>
 <p>:param rotation_model: an existing rotation model