Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error in addGeneIntegrationMatrix() with tutorial data: FN Error occured #2041

Closed
dgagler opened this issue Oct 30, 2023 · 1 comment
Closed
Labels
bug Something isn't working

Comments

@dgagler
Copy link

dgagler commented Oct 30, 2023

Hi,
Hi,

Hi,

Hi, I'm tryin got

Attach your log file
ArchR has a built-in logging functionality for all complex functions. You MUST attach your log file (indicated in the console output) to this issue. Just drag and drop it here.

Describe the bug
A clear and concise description of what the bug is.

To Reproduce
To help us optimally address your issue, please try to reproduce this issue using the tutorial hematopoiesis dataset and provide us the command(s) to reproduce your bug. Our first question to you will be "can you reproduce this with the tutorial dataset" so please do this.

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem. Do not screenshot code or text but embed this in markdown using triple-backticks.

Session Info
If you do not have a log file because the function that caused the error does not produce one, please paste the output of "sessionInfo()" here.

Additional context
Add any other context about the problem here.

@dgagler dgagler added the bug Something isn't working label Oct 30, 2023
@rcorces
Copy link
Collaborator

rcorces commented Oct 30, 2023

Hi @dgagler! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and feature requests should be posted in the Discussions section, not in Issues.

It is worth noting that there are very few actual bugs in ArchR. If you are getting an error, it is probably something specific to your dataset, usage, or computational environment, all of which are extremely challenging to troubleshoot. As such, we require reproducible examples (preferably using the tutorial dataset) from users who want assistance. If you cannot reproduce your error, we will not be able to help.
Before going through the work of making a reproducible example, search the previous Issues, Discussions, function definitions, or the ArchR manual and you will likely find the answers you are looking for.
If your post does not contain a reproducible example, it is unlikely to receive a response.

__In addition to a reproducible example, you must do the following things before we help you, unless your original post already contained this information:
1. If you've encountered an error, have you already searched previous Issues to make sure that this hasn't already been solved?
2. Did you post your log file? If not, add it now.
3. Remove any screenshots that contain text and instead copy and paste the text using markdown's codeblock syntax (three consecutive backticks). You can do this by editing your original post.

@dgagler dgagler closed this as completed Oct 30, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

2 participants