diff --git a/ChangeLog b/ChangeLog index 64b8a5915..2c1ef9c6a 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,32 @@ +2009-07-21 Shaun Jackman + + * Release version 1.0.11. + * Assemble colour-space reads. Read identifiers must be named with + the suffixes F3 and R3. + * Read files in qseq format. Thanks to Tony Raymond (tgr). + * Prevent misassemblies mediated by tandem segmental duplications. + A sequence XRRY, where R is a repeat sequence, could have been + misassembled as XRY. (tgr) + + abyss-pe: + * Integrate with Sun Grid Engine (SGE). A parallel, paired-end + assembly can be run with a single qsub command. The parameters + lib, np and k default to the qsub environment variables JOB_NAME + (qsub -N), NSLOTS (qsub -pe) and SGE_TASK_ID (qsub -t) + respectively. + * The .pair file, the largest intermediate file, is now gzipped. + + ABYSS-P: + * Bug fix. At k=19, k-mer would be distributed to even-numbered + processes only. + + KAligner: + * Multithreaded. The -j, --threads option specifies the number of + threads to use. The order in which the alignments are output will + vary from run to run, but the alignments are deterministic and + will not vary. Each thread reads and aligns one file, so the reads + must be in more than one file to use this feature. (tgr) + 2009-06-18 Shaun Jackman * Release version 1.0.10. diff --git a/configure.ac b/configure.ac index 1e32ef60e..69c5ea847 100644 --- a/configure.ac +++ b/configure.ac @@ -1,5 +1,5 @@ AC_PREREQ(2.59) -AC_INIT(abyss, 1.0.10, abyss@bcgsc.ca) +AC_INIT(abyss, 1.0.11, abyss@bcgsc.ca) AM_INIT_AUTOMAKE(foreign) AC_CONFIG_SRCDIR([ABYSS/Abyss.cpp]) AC_CONFIG_HEADER([config.h])