diff --git a/RResolver/RResolverShort.cpp b/RResolver/RResolverShort.cpp index 27cabd82e..418fa7823 100644 --- a/RResolver/RResolverShort.cpp +++ b/RResolver/RResolverShort.cpp @@ -46,8 +46,8 @@ static const char USAGE_MESSAGE[] = " -k, --kmer=N assembly k-mer size\n" " -h, --hist=PREFIX write the algorithm histograms with the given prefix.\n" " Histograms are omitted if no prefix is given." - " -t, --threshold=N set path support threshold to N. [3]" - " -x, --extract=N extract N rmers per read. [5]" + " -t, --threshold=N set path support threshold to N. [4]" + " -x, --extract=N extract N rmers per read. [4]" " -m, --min-tests=N set minimum number of sliding window moves to N. [20]" " -n, --branching=N set maximum number of branching paths to N. [75]" " -r, --rmer=N explicitly set r value (k value used by rresolver)." @@ -89,10 +89,10 @@ std::string outputGraphPath; std::string outputContigsPath; /** Number of kmers required to be found for a path to be supported */ -int threshold = 3; +int threshold = 4; /** Number of Rmers to extract per read */ -int extract = 5; +int extract = 4; /** Minimum number of sliding window moves */ int minTests = 20;