diff --git a/COPYRIGHT b/COPYRIGHT index 0c4d7a218..8dcf6fd60 100644 --- a/COPYRIGHT +++ b/COPYRIGHT @@ -3,14 +3,10 @@ Upstream-Name: ABySS Upstream-Contact: Shaun Jackman Source: https://github.com/bcgsc/abyss -License: GPL-NC-3+ - You may use, redistribute and modify this software for non-commercial - purposes under the terms of the GNU General Public License as - published by the Free Software Foundation, either version 3 of the - License, or (at your option) any later version. - . - To license ABySS for commercial purposes, please contact - Patrick Rebstein +License: GPL-3 + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, version 3. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of @@ -18,17 +14,26 @@ License: GPL-NC-3+ GNU General Public License for more details. . You should have received a copy of the GNU General Public License - along with this software. If not, see . + along with this program. If not, see . . - Debian may redistribute this software package. + For commercial licensing options, please contact + Patrick Rebstein Files: * -Copyright: Copyright 2014 Canada's Michael Smith Genome Sciences Centre -License: GPL-NC-3+ +Copyright: Copyright 2016 British Columbia Cancer Agency Branch +License: GPL-3 -Files: Common/* DataLayer/* DistanceEst/* FMIndex/* Map/* ParseAligns/* -Copyright: Copyright 2014 Canada's Michael Smith Genome Sciences Centre -License: GPL-3+ +Files: Layout/* +Copyright: Copyright 2012 Shaun Jackman +License: GPL-3 + +Files: lib/bloomfilter/* +Copyright: Copyright 2016 Justin Chu +License: GPL-3 + +Files: lib/rolling-hash/* +Copyright: Copyright 2016 Hamid Mohamadi +License: GPL-3 Files: Common/cholesky.hpp Copyright: Copyright 2005 Gunter Winkler, Konstantin Kutzkow @@ -38,10 +43,6 @@ Files: Common/city.cc Common/city.h Copyright: Copyright 2011 Google, Inc. License: Expat -Files: Layout/* -Copyright: Copyright 2012 Shaun Jackman -License: GPL-3+ - Files: dialign/* Copyright: Copyright 2008 Amarendran R. Subramanian License: LGPL-2.1+ @@ -127,22 +128,31 @@ License: Expat FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -License: GPL-3+ - This program is free software; you can redistribute it - and/or modify it under the terms of the GNU General Public - License as published by the Free Software Foundation; either - version 3 of the License, or (at your option) any later - version. - . - This program is distributed in the hope that it will be - useful, but WITHOUT ANY WARRANTY; without even the implied - warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the GNU General Public License for more - details. - . - You should have received a copy of the GNU General Public License - along with this software. If not, see . +Files: lib/gtest-*/* +Copyright: Copyright 2008 Google Inc. +License: BSD-3-clause + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are + met: . - On Debian systems, the full text of the GNU General Public - License version 3 can be found in the file - `/usr/share/common-licenses/GPL-3'. + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + * Redistributions in binary form must reproduce the above + copyright notice, this list of conditions and the following disclaimer + in the documentation and/or other materials provided with the + distribution. + * Neither the name of Google Inc. nor the names of its + contributors may be used to endorse or promote products derived from + this software without specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR + A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT + OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, + SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT + LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, + DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY + THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT + (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE + OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/LICENSE b/LICENSE index f13b0d6f5..542147ffa 100644 --- a/LICENSE +++ b/LICENSE @@ -1,24 +1,22 @@ ABySS -Copyright 2014 Canada's Michael Smith Genome Sciences Centre +Copyright 2016 British Columbia Cancer Agency Branch -You may use, redistribute and modify this software for non-commercial -purposes under the terms of the GNU General Public License as -published by the Free Software Foundation, either version 3 of the -License, or (at your option) any later version. - -To license ABySS for commercial purposes, please contact -Patrick Rebstein +This program is free software: you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation, version 3. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. -The complete text of the GNU General Public License version 3 follows -and is also available from the Free Software Foundation web site: -http://www.gnu.org/licenses/ +You should have received a copy of the GNU General Public License +along with this program. If not, see . + +For commercial licensing options, please contact +Patrick Rebstein -See the file `COPYRIGHT` for details of the copyright and license of +See the file COPYRIGHT for details of the copyright and license of each individual file included with this software. GNU GENERAL PUBLIC LICENSE