From 10229e175cff8447de929d651b7d1d0a09f1e9ab Mon Sep 17 00:00:00 2001 From: Lauren Coombe Date: Tue, 3 Jan 2023 15:52:10 -0800 Subject: [PATCH] Use sensitive=True mappings (#113) --- bin/tigmint-ntlink-map | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/tigmint-ntlink-map b/bin/tigmint-ntlink-map index 9b33713..b8aa125 100755 --- a/bin/tigmint-ntlink-map +++ b/bin/tigmint-ntlink-map @@ -11,7 +11,7 @@ import subprocess def run_ntlink_pair(args): "Run ntLink pair stage to obtain PAF-formatted mappings" command = f"ntLink pair target={args.target}.fa reads={args.reads} " \ - f"paf=True k={args.k} w={args.w} t={args.t}" + f"paf=True k={args.k} w={args.w} t={args.t} sensitive=True" command_shlex = shlex.split(command) return_code = subprocess.call(command_shlex) assert return_code == 0