CHANGELOG

From 4.0 to 4.1.1

Introduced ultrafast communication via sockets to retrieve descriptor scores/fitness from external tools (e.g., python libraries)
Conversion of molecular representation into DENOPTIM graphs by on-the-fly fragmentation (via GUI or in GA run)
Extended the functionality of the genetic algorithm by adding optional behavior.
Generalized SUS selection strategy
GUI can now handle also settings not directly defined in GUI's forms.
Minor debugs.

Removel limitation to max number fo AP and vertex indexes. Now AP and vertex I Ds are unique only within a graph.
It is now possible to control the maximum size of the subgraphs that the crossover operation can swap. See keyword GA-MaxXoverSubGraphSize.
Simplified format of symmetric objects inf JSON strings. See src/misc/JSONConverter/convert_symmetric_sets_in_JSON.py for upgradinf existing files.
Several minor debugs

Use of Maven to build and test.
Command line build and test on Windows.
Creation of single Main method to start any DENOPTIM run or GUI, and open files from command line.
Introduction of Templates (recursive graphs).
Refactoring of genetic algorithm.
Introduction of new mutation operators.
Introduction of subgraph crossover operation.
Growth probability can be controlled by molecular size.
Introduction JSON format for vertexes and graphs.
Introduction on interface mechanism for interaction with ongoing runs.