Problems installing firedrake on MacOS

[GeorgAUT]

I have been trying to install firedrake on my Mac (OS 14.1.1), but unfortunately I cannot get the install to complete. I have gone through all common steps trying to fix the problem, including using pyenv but to no success. Would you please be able to help me fix the problem?

Upon using /opt/homebrew/bin/python3 firedrake-install the install starts and gets to the point of installing petsc, but then interrupts with the following printout in terminal:

/Users/georg/firedrake-install:20: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
  from pkg_resources.extern.packaging.version import Version, InvalidVersion
Running firedrake-install
Installing command line tools...
Checking brew doctor...
Installing required packages via homebrew...
Required package 'gcc' is already installed via Homebrew.
Required package 'autoconf' is already installed via Homebrew.
Required package 'make' is already installed via Homebrew.
Required package 'automake' is already installed via Homebrew.
Required package 'cmake' is already installed via Homebrew.
Required package 'libtool' is already installed via Homebrew.
Required package 'boost' is already installed via Homebrew.
Creating firedrake venv in '/Users/georg/firedrake'.
We use pybind11==2.9.2 until the issue with pybind11==2.10.0 is resolved.

BLAS config is {'BLAS': '/Users/georg/firedrake/src/petsc/default', 'OPENBLAS': '/Users/georg/firedrake/src/petsc/default', 'LDFLAGS': '-L/opt/homebrew/opt/gcc/lib/gcc/13'}
Configuration saved to /Users/georg/firedrake/.configuration.json
Cloning firedrake

Successfully cloned repository firedrake
Checking out branch master
Successfully checked out branch master
Updating submodules.
Successfully updated submodules.
Creating firedrake-update script.
Pip installing VTK for Python 3.11 to venv
Cloning the dependencies of firedrake
Cloning ufl

Successfully cloned repository ufl
Checking out branch master
Successfully checked out branch master
Updating submodules.
Successfully updated submodules.
Cloning fiat

Successfully cloned repository fiat
Checking out branch master
Successfully checked out branch master
Updating submodules.
Successfully updated submodules.
Cloning FInAT

Successfully cloned repository FInAT
Checking out branch master
Successfully checked out branch master
Updating submodules.
Successfully updated submodules.
Cloning tsfc

Successfully cloned repository tsfc
Checking out branch master
Successfully checked out branch master
Updating submodules.
Successfully updated submodules.
Cloning PyOP2

Successfully cloned repository PyOP2
Checking out branch master
Successfully checked out branch master
Updating submodules.
Successfully updated submodules.
Cloning pyadjoint

Successfully cloned repository pyadjoint
Checking out branch master
Successfully checked out branch master
Updating submodules.
Successfully updated submodules.
Cloning petsc

Successfully cloned repository petsc
Checking out branch firedrake
Successfully checked out branch firedrake
Updating submodules.
Successfully updated submodules.
Cloning pytest-mpi

Successfully cloned repository pytest-mpi
Checking out branch main
Successfully checked out branch main
Updating submodules.
Successfully updated submodules.
Cloning the dependencies of PyOP2
Cloning loopy

Successfully cloned repository loopy
Checking out branch main
Successfully checked out branch main
Updating submodules.
Successfully updated submodules.
Installing petsc/
Depending on your platform, PETSc may take an hour or more to build!
Traceback (most recent call last):
  File "/Users/georg/firedrake-install", line 1907, in <module>
    install("petsc/")
  File "/Users/georg/firedrake-install", line 1051, in install
    build_and_install_petsc()
  File "/Users/georg/firedrake-install", line 1163, in build_and_install_petsc
    check_call([python, "./configure", "PETSC_DIR={}".format(petsc_dir), "PETSC_ARCH={}".format(petsc_arch)] + petsc_options)
  File "/Users/georg/firedrake-install", line 664, in check_call
    log.debug(subprocess.check_output(arguments, stderr=subprocess.STDOUT, env=os.environ).decode())
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/homebrew/Cellar/python@3.11/3.11.6_1/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py", line 466, in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/homebrew/Cellar/python@3.11/3.11.6_1/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['/Users/georg/firedrake/bin/python', './configure', 'PETSC_DIR=/Users/georg/firedrake/src/petsc', 'PETSC_ARCH=default', '--with-shared-libraries=1', '--download-bison', '--download-hypre', '--download-mumps', '--download-netcdf', '--with-fortran-bindings=0', "--download-openblas-make-options='USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'", '--download-metis', '--download-pastix', '--download-hwloc', '--download-ptscotch', '--download-hdf5', '--download-superlu_dist', '--with-debugging=0', '--with-x=0', '--download-openblas', '--with-c2html=0', '--download-suitesparse', '--LDFLAGS=-Wl,-ld_classic', '--download-chaco', '--download-scalapack', '--download-pnetcdf', '--download-hwloc-configure-arguments=--disable-opencl', '--CFLAGS=-Wno-implicit-function-declaration', '--with-zlib', '--download-mpich-configure-arguments=--disable-opencl', '--download-mpich']' returned non-zero exit status 1.


Install log saved in /Users/georg/firedrake-install.log

The firedrake install log is here: firedrake-install.log and the petsc configure log is here:
configure.log
.

Thank you very much for your help!

[Ig-dolci]

Can you update from Xcode15 to Xcode15 beta and try installing firedrake again? The Xcode releases are available here.

[Ig-dolci]

You can switch the Xcode in your machine using the command sudo xcode-select --switch /where_is_Xcode15_beta_located.

[GeorgAUT]

Thank you very much for the quick reply, that has been super helpful! Updating to Xcode15 beta fixed the issue, and the installation worked fine now!