From 3cad6b564093f977ef1cca4ff084624985739bcf Mon Sep 17 00:00:00 2001 From: Nathan Sheffield Date: Tue, 13 Feb 2024 07:19:58 -0500 Subject: [PATCH 1/2] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0b4d38d..efbef6e 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/geofetch/README.html) -`geofetch` is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates [standard PEPs](https://pep.databio.org/). `geofetch` is hosted at [pypi](https://pypi.org/project/geofetch/). You can convert the result of geofetch into unmapped `bam` or `fastq` files with the included `sraconvert` command. +`geofetch` is a command-line tool that downloads sequencing data and metadata from GEO and SRA and create metadata tables in [standard PEP format](https://pep.databio.org/). `geofetch` is hosted at [pypi](https://pypi.org/project/geofetch/). You can convert the result of geofetch into unmapped `bam` or `fastq` files with the included `sraconvert` command. ## Key geofetch features: From 5c3bbfcf897ec2f82e880891028f1625a9f1777f Mon Sep 17 00:00:00 2001 From: Nathan Sheffield Date: Tue, 13 Feb 2024 07:20:50 -0500 Subject: [PATCH 2/2] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index efbef6e..dd0ac2a 100644 --- a/README.md +++ b/README.md @@ -20,4 +20,4 @@ - Can search GEO to find relevant data - Can be used either as a command-line tool or from within Python using an API -For more information, see [complete documentation at geofetch.databio.org](http://geofetch.databio.org) (source in the [/docs](/docs) folder). +For more information, see [complete documentation at https://pep.databio.org/geofetch](https://pep.databio.org/geofetch).