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environment.yml
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name: viralfind
channels:
- conda-forge
- bioconda
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.8.3=py311hd4cff14_1
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.5=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=22.1.0=pyh71513ae_1
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.2=py311hd4cff14_1
- boto3=1.26.11=pyhd8ed1ab_0
- botocore=1.29.11=pyhd8ed1ab_0
- brotlipy=0.7.0=py311hd4cff14_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- cachetools=5.2.0=pyhd8ed1ab_0
- certifi=2022.9.24=pyhd8ed1ab_0
- cffi=1.15.1=py311h409f033_2
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- coin-or-cbc=2.10.8=h3786ebc_0
- coin-or-cgl=0.60.6=h6f57e76_2
- coin-or-clp=1.17.7=hc56784d_2
- coin-or-osi=0.108.7=h2720bb7_2
- coin-or-utils=2.11.6=h202d8b1_2
- coincbc=2.10.8=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- commonmark=0.9.1=py_0
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=38.0.3=py311hb3c386c_0
- dataclasses=0.8=pyhc8e2a94_3
- datrie=0.8.2=py311hd4cff14_6
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.19=py311h38be061_1
- dpath=2.0.6=py311h38be061_2
- dropbox=11.36.0=pyhd8ed1ab_0
- exceptiongroup=1.0.4=pyhd8ed1ab_0
- fastp=0.23.4=h5f740d0_0
- filechunkio=1.8=py_2
- filelock=3.8.0=pyhd8ed1ab_0
- frozenlist=1.3.3=py311hd4cff14_0
- ftputil=5.0.4=pyhd8ed1ab_0
- future=0.18.2=pyhd8ed1ab_6
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.29=pyhd8ed1ab_0
- google-api-core=2.10.2=pyhd8ed1ab_0
- google-api-python-client=2.66.0=pyhd8ed1ab_0
- google-auth=2.14.1=pyh1a96a4e_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-cloud-core=2.3.2=pyhd8ed1ab_0
- google-cloud-storage=2.6.0=pyh1a96a4e_0
- google-crc32c=1.1.2=py311h98db957_4
- google-resumable-media=2.4.0=pyhd8ed1ab_0
- googleapis-common-protos=1.57.0=py311h38be061_0
- grpcio=1.49.1=py311h540e3f9_1
- htslib=1.16=h6bc39ce_0
- httplib2=0.21.0=pyhd8ed1ab_0
- humanfriendly=10.0=py311h38be061_4
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=5.0.0=pyha770c72_1
- importlib_resources=5.10.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- isa-l=2.30.0=ha770c72_4
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- jsonschema=4.17.0=pyhd8ed1ab_0
- jupyter_core=5.0.0=py311h38be061_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.39=hc81fddc_0
- libabseil=20220623.0=cxx17_h48a1fff_5
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=7.86.0=h7bff187_1
- libdeflate=1.14=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- libgrpc=1.49.1=h05bd8bd_1
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libprotobuf=3.21.9=h6239696_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libuuid=2.32.1=h7f98852_1000
- libzlib=1.2.13=h166bdaf_4
- logmuse=0.2.6=pyh8c360ce_0
- markupsafe=2.1.1=py311hd4cff14_2
- multidict=6.0.2=py311hd4cff14_2
- nbformat=5.7.0=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- numpy=1.23.4=py311h7d28db0_1
- oauth2client=4.1.3=py_0
- openssl=1.1.1s=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.5.1=py311h8b32b4d_1
- paramiko=2.12.0=pyhd8ed1ab_0
- peppy=0.35.3=pyhd8ed1ab_0
- pip=22.3.1=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- plac=1.3.5=pyhd8ed1ab_0
- platformdirs=2.5.2=pyhd8ed1ab_1
- pluggy=1.0.0=pyhd8ed1ab_5
- ply=3.11=py_1
- prettytable=3.4.1=pyhd8ed1ab_0
- protobuf=4.21.9=py311ha362b79_0
- psutil=5.9.4=py311hd4cff14_0
- pulp=2.7.0=py311h38be061_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.13.0=pyhd8ed1ab_0
- pynacl=1.5.0=py311hd4cff14_2
- pyopenssl=22.1.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.19.2=py311hd4cff14_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.2.0=pyhd8ed1ab_2
- python=3.11.0=h582c2e5_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python-irodsclient=1.1.5=pyhd8ed1ab_0
- python_abi=3.11=2_cp311
- pytz=2022.6=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py311hd4cff14_5
- re2=2022.06.01=h27087fc_0
- readline=8.1.2=h0f457ee_0
- requests=2.28.1=pyhd8ed1ab_1
- reretry=0.11.1=pyhd8ed1ab_0
- rich=12.6.0=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- s3transfer=0.6.0=pyhd8ed1ab_0
- samtools=1.16.1=h6899075_1
- setuptools=65.5.1=pyhd8ed1ab_0
- setuptools-scm=7.0.5=pyhd8ed1ab_1
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=6.2.0=pyha770c72_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=7.24.0=hdfd78af_1
- snakemake-minimal=7.24.0=pyhdfd78af_0
- star=2.7.10b=h9ee0642_0
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- subread=2.0.6=he4a0461_2
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.7=pyhd8ed1ab_0
- traitlets=5.5.0=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022f=h191b570_0
- ubiquerg=0.6.2=pyhd8ed1ab_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.11=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.38.4=pyhd8ed1ab_0
- wrapt=1.14.1=py311hd4cff14_1
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.8.1=py311hd4cff14_0
- yte=1.5.1=py311h38be061_1
- zipp=3.10.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4