-
Notifications
You must be signed in to change notification settings - Fork 29
237 lines (212 loc) · 11.2 KB
/
nemo_v5_tests.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
# -----------------------------------------------------------------------------
# BSD 3-Clause License
#
# Copyright (c) 2024-2025, Science and Technology Facilities Council.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# * Neither the name of the copyright holder nor the names of its
# contributors may be used to endorse or promote products derived from
# this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
# COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
# -----------------------------------------------------------------------------
# Author S. Siso, STFC Daresbury Lab
# This workflow will use a self-hosted runner to perform the more expensive
# NEMOv5 integrations tests that are not run on GHA systems.
name: NEMOv5 Integration Tests
on:
push
jobs:
run_if_on_mirror:
if: ${{ github.repository == 'stfc/PSyclone-mirror' }}
runs-on: self-hosted
steps:
- uses: actions/checkout@v3
with:
submodules: recursive
# This is required to get the commit history for merge commits for
# the ci-skip check below.
fetch-depth: '0'
- name: Check for [skip ci] in commit message
uses: mstachniuk/ci-skip@v1
with:
# This setting causes the tests to 'fail' if [skip ci] is specified
fail-fast: true
commit-filter: '[skip ci]'
- name: Install dependencies
run: |
module load python/${PYTHON_VERSION}
python -m venv .runner_venv
source .runner_venv/bin/activate
python -m pip install --upgrade pip
# Uncomment the below to use the submodule version of fparser rather
# than the latest release from pypi.
# pip install external/fparser
pip install .
# PSyclone passthrough for 5.0-beta of NEMO.
- name: NEMO 5.0 gfortran passthrough
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack unload && spack load nemo-build-environment%gcc@14
source .runner_venv/bin/activate
export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts
export PSYCLONE_HOME=${PWD}/.runner_venv
export NEMO_DIR=${HOME}/NEMOv5
export TEST_DIR=BENCH_PASSTHROUGH_GCC
# Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS
cd $NEMO_DIR
cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm
export FCFLAGS="-fdefault-real-8 -O2 -fcray-pointer -ffree-line-length-none -g"
# Clean up and compile
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} clean -y
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} -p ${PSYCLONE_NEMO_DIR}/passthrough.py \
add_key "key_nosignedzero" -j 4 -v 1
# Run test
cd $NEMO_DIR/tests/${TEST_DIR}/EXP00
cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg
mpirun -np 4 ./nemo
tail run.stat
# This was produced with gfortran, so we can do an exact diff
diff $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.gfortran.small.100steps run.stat
- name: NEMO 5.0 nvidia passthrough
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack unload && spack load nemo-build-environment%nvhpc@24.5
source .runner_venv/bin/activate
export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts
export PSYCLONE_HOME=${PWD}/.runner_venv
export NEMO_DIR=${HOME}/NEMOv5
export TEST_DIR=BENCH_PASSTHROUGH_NVHPC
# Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS
cd $NEMO_DIR
cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm
export FCFLAGS="-i4 -Mr8 -O1 -Kieee -nofma -Mnovect"
# Clean up and compile
# Without key_mpi_off it fails to compile (even without psyclone)
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} clean -y
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} -p ${PSYCLONE_NEMO_DIR}/passthrough.py \
add_key "key_mpi_off key_nosignedzero" -j 4 -v 1
# Run test
cd $NEMO_DIR/tests/${TEST_DIR}/EXP00
cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg
./nemo
tail run.stat
diff $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.nvhpc.small.100steps run.stat
export VAR_TIME=$(awk '/ step /{print $3}' timing.output | head -n 1 | sed -e 's/s//')
echo "Time-stepping duration = " $VAR_TIME
- name: NEMO 5.0 Intel passthrough
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack unload && spack load nemo-build-environment%oneapi
source .runner_venv/bin/activate
export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts
export PSYCLONE_HOME=${PWD}/.runner_venv
export NEMO_DIR=${HOME}/NEMOv5
export TEST_DIR=BENCH_PASSTHROUGH_ONEAPI
# Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS
cd $NEMO_DIR
cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm
export FCFLAGS="-i4 -r8 -O2 -fp-model precise -fno-alias -g"
# Clean up and compile
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} clean -y
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} -p ${PSYCLONE_NEMO_DIR}/passthrough.py \
add_key "key_nosignedzero" -j 4 -v 1
# Run test
cd $NEMO_DIR/tests/${TEST_DIR}/EXP00
cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg
mpirun -np 6 ./nemo
tail run.stat
diff $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.oneapi.small.100steps run.stat
- name: NEMO 5.0 gfortran OpenMP for CPUs
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack unload && spack load nemo-build-environment%gcc@14
source .runner_venv/bin/activate
export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts
export PSYCLONE_HOME=${PWD}/.runner_venv
export NEMO_DIR=${HOME}/NEMOv5
export TEST_DIR=BENCH_OMP_THREADING_GCC
# Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS
cd $NEMO_DIR
cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm
export FCFLAGS="-fdefault-real-8 -O2 -fcray-pointer -ffree-line-length-none -g -fopenmp"
# Clean up and compile
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} clean -y
export NEMOV5=1 # Enables specific NEMOV5 optimisations in the PSyclone transformation script
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} -p ${PSYCLONE_NEMO_DIR}/omp_cpu_trans.py \
add_key "key_nosignedzero" -j 4 -v 1
# Run test
cd $NEMO_DIR/tests/${TEST_DIR}/EXP00
cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg
OMP_NUM_THREADS=4 mpirun -np 1 ./nemo
tail run.stat
diff $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.gfortran.small.100steps run.stat
export TIME_sec=$(grep "local proces" timing.output | head -n 1 | awk '{print $4}' | tr -d s)
${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \
"mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \
--quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \
--password ${{ secrets.MONGODB_PASSWORD }} \
--eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'",
github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'",
ci_test: "NEMOv5 OpenMP for CPU", nemo_version: "NEMOv5", system: "GlaDos",
compiler:"gfortran-14" , date: new Date(), elapsed_time: '"${TIME_sec}"'})'
- name: NEMO 5.0 nvidia OpenMP for GPUs (managed memory)
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack unload && spack load nemo-build-environment%nvhpc@24.5
source .runner_venv/bin/activate
export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts
export PSYCLONE_HOME=${PWD}/.runner_venv
export NEMO_DIR=${HOME}/NEMOv5
export TEST_DIR=BENCH_OMP_OFFLOAD_NVHPC
# Set up FCM: PATHs are loaded from SPACK, we only need to set the FCFLAGS
# We compile at -O1 to permit comparison of the results.
cd $NEMO_DIR
cp $PSYCLONE_NEMO_DIR/KGOs/arch-linux_spack.fcm arch/arch-linux_spack.fcm
export FCFLAGS="-i4 -Mr8 -O1 -Kieee -nofma -Mnovect -g -mp=gpu -gpu=managed"
# Clean up and compile
# Without key_mpi_off it fails to compile (even without psyclone)
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} clean -y
./makenemo -r BENCH -m linux_spack -n ${TEST_DIR} -p ${PSYCLONE_NEMO_DIR}/omp_gpu_trans.py \
add_key "key_mpi_off key_nosignedzero" -j 4 -v 1
# Run test (disabled because it is currently too slow)
# cd $NEMO_DIR/tests/${TEST_DIR}/EXP00
# cp $PSYCLONE_NEMO_DIR/KGOs/namelist_cfg_bench_small namelist_cfg
# ./nemo
# tail run.stat
# diff $PSYCLONE_NEMO_DIR/KGOs/run.stat.bench.nvhpc.small.100steps run.stat
# export TIME_sec=$(grep "local proces" timing.output | head -n 1 | awk '{print $4}' | tr -d s)
# ${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \
# "mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \
# --quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \
# --password ${{ secrets.MONGODB_PASSWORD }} \
# --eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'",
# github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'",
# ci_test: "NEMOv5 OpenMP for GPU", nemo_version: "NEMOv5", system: "GlaDos",
# compiler:"nvhpc-24.5" , date: new Date(), elapsed_time: '"${TIME_sec}"'})'