_pkgdown.yaml

---

url: https://github.com/roche/crmPack

template:
  params:
    bootswatch: cerulean

home:
  strip_header: true

navbar:
  type: default
  right:
    - icon: fa-github fa-lg
      href: https://github.com/roche/crmPack

development:
  mode: devel

reference:
  - title: Package
    contents:
      - crmPack-package
  - title: Classes
    contents:
      - Validate
      - GeneralData
      - Data
      - DataDual
      - DataParts
      - DataMixture
      - DataDA
      - McmcOptions
      - AllModels
      - GeneralModel
      - Model
      - ModelLogNormal
      - LogisticNormal
      - LogisticLogNormal
      - LogisticLogNormalSub
      - IncrementsNumDoseLevels
      - ProbitLogNormal
      - ProbitLogNormalRel
      - StoppingMTDCV
      - StoppingLowestDoseHSRBeta
      - IncrementsHSRBeta
  - title: Internal Helper Functions
    contents:
      - h_validate_combine_results
      - h_doses_unique_per_cohort
      - h_all_equivalent
      - h_plot_data_df
      - h_plot_data_cohort_lines
      - h_check_fun_formals
      - h_is_positive_definite
      - h_slots
      - h_format_number
      - h_rapply
      - h_jags_add_dummy
      - h_jags_join_models
      - h_jags_get_model_inits
      - h_jags_get_data
      - h_jags_write_model
      - h_jags_extract_samples
      - h_null_if_na
      - h_null_if_scalar
  - title: Internal Validation Functions
    contents:
      - validate_subjects
      - validate_data
      - validate_data_dual
      - validate_data_parts
      - validate_data_mixture
      - validate_data_DA
      - validate_mcmc_options
      - validate_general_model
      - validate_model
      - validate_logistic_log_normal
      - validate_mcmc_options
      - validate_increments_numdoselevels
      - validate_model_log_normal
      - validate_stopping_mtd_cv
      - validate_stopping_lowest_dose_hsr_beta
      - validate_increments_hsr_beta
  - title: Methods
    contents:
      - plot-Data
      - plot-DataDual
      - plot-DataDA
      - update-Data
      - update-DataParts
      - update-DataDual
      - update-DataDA
      - getEff
      - getEff-DataDual
      - sampleSize
      - sampleSize-McmcOptions
      - saveSample
      - saveSample-McmcOptions
      - doseFunction
      - doseFunction-GeneralModel
      - doseFunction-ModelTox
      - dose
      - dose-Model
      - dose-LogisticNormal
      - dose-LogisticLogNormal
      - dose-LogisticLogNormalSub
      - dose-ProbitLogNormal
      - dose-ProbitLogNormalRel
      - dose-LogisticLogNormalMixture
      - dose-LogisticIndepBeta
      - dose-LogisticIndepBeta-noSamples
      - probFunction
      - probFunction-GeneralModel
      - probFunction-ModelTox
      - prob
      - prob-Model
      - prob-LogisticNormal
      - prob-LogisticLogNormal
      - prob-LogisticLogNormalSub
      - prob-ProbitLogNormal
      - prob-ProbitLogNormalRel
      - prob-LogisticLogNormalMixture
      - prob-LogisticIndepBeta
      - prob-LogisticIndepBeta-noSamples
      - stopTrial-StoppingLowestDoseHSRBeta
      - stopTrial-StoppingMTDCV
      - maxDose-IncrementsNumDoseLevels
      - maxDose-IncrementsHSRBeta
  - title: Functions
    contents:
      - enable_logging
      - disable_logging
      - is_logging_enabled
      - log_trace
      - dapply