From 4771f33ef74574732bd2cba94cea45bfd13eafb0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andr=C3=A9=20Pedersen?= Date: Tue, 25 Jun 2024 17:51:38 +0200 Subject: [PATCH 1/6] Added README banner after arXiv preprint publication --- README.md | 15 ++++++++++++++- 1 file changed, 14 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index cfab347..9cf393e 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,17 @@ -# DRU-Net +
+

🫁 DRU-Net

+

Lung carcinoma segmentation using multi-lens distortion and fusion refinement network

+ +[![license](https://img.shields.io/github/license/DAVFoundation/captain-n3m0.svg?style=flat-square)](https://github.com/AICAN-Research/DRU-Net/blob/main/LICENSE.md) +[![CI/CD](https://github.com/AICAN-Research/DRU-Net/actions/workflows/deploy.yml/badge.svg)](https://github.com/AICAN-Research/DRU-Net/actions/workflows/linting.yml) + +Open In Colab +[![arXiv preprint](https://img.shields.io/badge/arXiv-preprint-D12424)]( +https://doi.org/10.48550/arXiv.2406.14287) + +**DRU-Net** was developed the AICAN research group. + +
## Introduction From 2888b842156e149cbe7dd71f8828563c41096a21 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andr=C3=A9=20Pedersen?= Date: Tue, 25 Jun 2024 17:54:00 +0200 Subject: [PATCH 2/6] Updated Intro --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 9cf393e..3e74ff4 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@

🫁 DRU-Net

-

Lung carcinoma segmentation using multi-lens distortion and fusion refinement network

+

Segmentation of Non-Small Cell Lung Carcinomas +

[![license](https://img.shields.io/github/license/DAVFoundation/captain-n3m0.svg?style=flat-square)](https://github.com/AICAN-Research/DRU-Net/blob/main/LICENSE.md) [![CI/CD](https://github.com/AICAN-Research/DRU-Net/actions/workflows/deploy.yml/badge.svg)](https://github.com/AICAN-Research/DRU-Net/actions/workflows/linting.yml) @@ -15,7 +16,7 @@ https://doi.org/10.48550/arXiv.2406.14287) ## Introduction -This project presents DRU-Net: Lung carcinoma segmentation using multi-lens distortion and fusion refinement network. +This repository contains the source code related to the manuscript _"DRU-Net: Lung carcinoma segmentation using multi-lens distortion and fusion refinement network"_ which is openly available on [arXiv](https://arxiv.org/abs/2406.14287). ## Getting started From 5e01e74265e2d19c571e1ed5cecc7148da2273af Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andr=C3=A9=20Pedersen?= Date: Tue, 25 Jun 2024 17:59:36 +0200 Subject: [PATCH 3/6] Added closable dev section in README --- README.md | 31 +++++++++++++++++++++++++++---- 1 file changed, 27 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 3e74ff4..b4380af 100644 --- a/README.md +++ b/README.md @@ -14,13 +14,13 @@ https://doi.org/10.48550/arXiv.2406.14287)
-## Introduction +# Introduction This repository contains the source code related to the manuscript _"DRU-Net: Lung carcinoma segmentation using multi-lens distortion and fusion refinement network"_ which is openly available on [arXiv](https://arxiv.org/abs/2406.14287). -## Getting started +# Getting started -### Setup +## Setup 1. Setup virtual environment and activate it: @@ -35,7 +35,13 @@ source venv/bin/activate pip install -r requirements.txt ``` -### Linting + +
+ + +# Development + +## Linting First install linting dependencies: @@ -54,3 +60,20 @@ Perform automatic linting by: ``` sh shell/format.sh ``` + +
+ +## Citation + +If you found the source code or manuscript relevant in your research, please cite the following reference: + +``` +@misc{oskouei2024segmentation, + title={{Segmentation of Non-Small Cell Lung Carcinomas: Introducing DRU-Net and Multi-Lens Distortion}}, + author={Soroush Oskouei and Marit Valla and André Pedersen and Erik Smistad and Vibeke Grotnes Dale and Maren Høibø and Sissel Gyrid Freim Wahl and Mats Dehli Haugum and Thomas Langø and Maria Paula Ramnefjell and Lars Andreas Akslen and Gabriel Kiss and Hanne Sorger}, + year={2024}, + eprint={2406.14287}, + archivePrefix={arXiv}, + doi={10.48550/arXiv.2406.14287} +} +``` \ No newline at end of file From 6d4f0c3d174b625b0a1299297fa7e858e54ed6bd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andr=C3=A9=20Pedersen?= Date: Tue, 25 Jun 2024 18:01:06 +0200 Subject: [PATCH 4/6] Removed HF and CI/CD badges --- README.md | 2 -- 1 file changed, 2 deletions(-) diff --git a/README.md b/README.md index b4380af..912f6e7 100644 --- a/README.md +++ b/README.md @@ -4,8 +4,6 @@ [![license](https://img.shields.io/github/license/DAVFoundation/captain-n3m0.svg?style=flat-square)](https://github.com/AICAN-Research/DRU-Net/blob/main/LICENSE.md) -[![CI/CD](https://github.com/AICAN-Research/DRU-Net/actions/workflows/deploy.yml/badge.svg)](https://github.com/AICAN-Research/DRU-Net/actions/workflows/linting.yml) - Open In Colab [![arXiv preprint](https://img.shields.io/badge/arXiv-preprint-D12424)]( https://doi.org/10.48550/arXiv.2406.14287) From c0bc5a6a96391b76b00f64b3f177de12e6325691 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andr=C3=A9=20Pedersen?= Date: Tue, 25 Jun 2024 18:02:06 +0200 Subject: [PATCH 5/6] Add extension to LICENSE --- LICENSE => LICENSE.md | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename LICENSE => LICENSE.md (100%) diff --git a/LICENSE b/LICENSE.md similarity index 100% rename from LICENSE rename to LICENSE.md From f31ce56acbf0e748a800d567c549d888aea68da2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andr=C3=A9=20Pedersen?= Date: Tue, 25 Jun 2024 18:03:56 +0200 Subject: [PATCH 6/6] Changed license badge style --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 912f6e7..60fcdd5 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@

Segmentation of Non-Small Cell Lung Carcinomas

-[![license](https://img.shields.io/github/license/DAVFoundation/captain-n3m0.svg?style=flat-square)](https://github.com/AICAN-Research/DRU-Net/blob/main/LICENSE.md) +[![license](https://img.shields.io/badge/MIT-License-008000)](https://github.com/AICAN-Research/DRU-Net/blob/main/LICENSE.md) Open In Colab [![arXiv preprint](https://img.shields.io/badge/arXiv-preprint-D12424)]( https://doi.org/10.48550/arXiv.2406.14287)