From 239ec93654246797b816a7792a2373045f55aae6 Mon Sep 17 00:00:00 2001 From: Fedorov113 Date: Thu, 26 Mar 2020 15:18:16 +0300 Subject: [PATCH] Update README.md add comparison with other software --- README.md | 16 ++++++---------- 1 file changed, 6 insertions(+), 10 deletions(-) diff --git a/README.md b/README.md index 6a873ae..ae5a6db 100644 --- a/README.md +++ b/README.md @@ -113,16 +113,12 @@ Just load this files in R using `readRDS()` function. ## Comparison with other systems -| Feature | Assnake | QIIME2 | -| ------ | ------ | Assnake | -| Dropbox | [plugins/dropbox/README.md][PlDb] | Assnake | - - -| GitHub | [plugins/github/README.md][PlGh] | -| Google Drive | [plugins/googledrive/README.md][PlGd] | -| OneDrive | [plugins/onedrive/README.md][PlOd] | -| Medium | [plugins/medium/README.md][PlMe] | -| Google Analytics | [plugins/googleanalytics/README.md][PlGa] | +| Feature | Assnake | Anvio | QIIME2 | nf-core | snakePipes | StaG | +|------------------------------------------|------------------------------------|-------------------------------------|---------------------|----------------------------|--------------------------------------------------------------------|-------------------------------------| +| Link | https://github.com/ASSNAKE/assnake | http://merenlab.org/software/anvio/ | https://qiime2.org/ | https://github.com/nf-core | https://academic.oup.com/bioinformatics/article/35/22/4757/5499080 | https://github.com/ctmrbio/stag-mwc | +| Data Management | YES | NO | NO | NO | ? | NO | +| Modularity (without editing source code) | FULL | PARTIAL? | FULL | FULL | NO | NO | +| Metagenomic pipeline | YES | ONLY BINNING | ONLY 16s | In development | NO | PARTIAL | ## Development