diff --git a/README.md b/README.md index ae5a6db..ebc389e 100644 --- a/README.md +++ b/README.md @@ -113,12 +113,13 @@ Just load this files in R using `readRDS()` function. ## Comparison with other systems -| Feature | Assnake | Anvio | QIIME2 | nf-core | snakePipes | StaG | -|------------------------------------------|------------------------------------|-------------------------------------|---------------------|----------------------------|--------------------------------------------------------------------|-------------------------------------| -| Link | https://github.com/ASSNAKE/assnake | http://merenlab.org/software/anvio/ | https://qiime2.org/ | https://github.com/nf-core | https://academic.oup.com/bioinformatics/article/35/22/4757/5499080 | https://github.com/ctmrbio/stag-mwc | -| Data Management | YES | NO | NO | NO | ? | NO | -| Modularity (without editing source code) | FULL | PARTIAL? | FULL | FULL | NO | NO | -| Metagenomic pipeline | YES | ONLY BINNING | ONLY 16s | In development | NO | PARTIAL | +| Feature | Assnake | Anvio | QIIME2 | nf-core | snakePipes | StaG | SqueezeMeta | Sunbeam | MetaWRAP | +|------------------------------------------|------------------------------------|-------------------------------------|---------------------|----------------------------|--------------------------------------------------------------------|-------------------------------------|-----------------------------------------|-----------------------------------------|-----------------------------------| +| Link | https://github.com/ASSNAKE/assnake | http://merenlab.org/software/anvio/ | https://qiime2.org/ | https://github.com/nf-core | https://academic.oup.com/bioinformatics/article/35/22/4757/5499080 | https://github.com/ctmrbio/stag-mwc | https://github.com/jtamames/SqueezeMeta | https://github.com/sunbeam-labs/sunbeam | https://github.com/bxlab/metaWRAP | +| Data Management | YES | PARTIAL | NO | NO | ? | NO | PARTIAL | YES | NO | +| Modularity (without editing source code) | FULL | PARTIAL? | FULL | FULL | NO | NO | NO | FULL | NO | +| Metagenomic pipeline | YES | ONLY BINNING | ONLY 16s | In development | NO | YES | Only assembly based | YES | YES | +| Workflow system | Snakemake | Snakemake | NONE | Nextflow | Snakemake | Snakemake | Snakemake | Snakemake | NONE | ## Development