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Create ssGSEA pathway analysis example with RNA-seq #135

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cansavvy opened this issue Jul 9, 2020 · 4 comments
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Create ssGSEA pathway analysis example with RNA-seq #135

cansavvy opened this issue Jul 9, 2020 · 4 comments
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not ready Needs more details/planning before it can be acted on

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@cansavvy
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cansavvy commented Jul 9, 2020

Related #110
@cansavvy
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cansavvy commented Aug 3, 2020 •
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This can built off of the new workshop material: https://github.com/AlexsLemonade/training-modules/blob/master/pathway-analysis/02-gene_set_enrichment_analysis.Rmd

@jaclyn-taroni
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That notebook is GSEA material. This issue tracks ssGSEA (could sub GSVA).

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Side note: I would probably add a GSEA preranked issue that does use that material!

@cansavvy cansavvy added the not ready Needs more details/planning before it can be acted on label Aug 6, 2020
@cansavvy
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This issue is being replaced by a broader issue #190

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