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amr_results.tab
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#FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE
pneumoniae10_contigs.fasta NODE_7_length_87894_cov_114.121165 54765 55982 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae10_contigs.fasta NODE_7_length_87894_cov_114.121165 56102 57565 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae10_contigs.fasta NODE_7_length_87894_cov_114.121165 59291 61210 - tet(M)_2 1-1920/1920 =============== 0/0 100.00 100.00 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae11_contigs.fasta NODE_8_length_72531_cov_86.779858 25147 26364 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae11_contigs.fasta NODE_8_length_72531_cov_86.779858 26484 27947 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae11_contigs.fasta NODE_8_length_72531_cov_86.779858 29673 31592 - tet(M)_12 1-1920/1920 =============== 0/0 100.00 99.58 resfinder FR671418 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae12_contigs.fasta NODE_12_length_73279_cov_96.493827 18762 19979 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae12_contigs.fasta NODE_12_length_73279_cov_96.493827 20099 21562 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae12_contigs.fasta NODE_12_length_73279_cov_96.493827 23288 25207 - tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.84 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae12_contigs.fasta NODE_38_length_6596_cov_110.302400 2115 2765 + cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae13_contigs.fasta NODE_12_length_73279_cov_96.400702 48073 49992 + tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.84 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae13_contigs.fasta NODE_12_length_73279_cov_96.400702 51718 53181 - msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae13_contigs.fasta NODE_12_length_73279_cov_96.400702 53301 54518 - mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae13_contigs.fasta NODE_37_length_6596_cov_94.991897 2115 2765 + cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae14_contigs.fasta NODE_1_length_195913_cov_93.033131 75227 76444 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae14_contigs.fasta NODE_1_length_195913_cov_93.033131 76564 78027 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae14_contigs.fasta NODE_9_length_92807_cov_88.035298 26563 28482 - tet(M)_12 1-1920/1920 =============== 0/0 100.00 99.74 resfinder FR671418 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae15_contigs.fasta NODE_2_length_218226_cov_48.170989 126112 127329 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae15_contigs.fasta NODE_2_length_218226_cov_48.170989 127449 128912 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae15_contigs.fasta NODE_2_length_218226_cov_48.170989 130638 132557 - tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.27 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae15_contigs.fasta NODE_2_length_218226_cov_48.170989 182481 183131 + cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae16_contigs.fasta NODE_7_length_82067_cov_55.426894 8446 10365 - tet(M)_8 1-1920/1920 =============== 0/0 100.00 99.79 resfinder X04388 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae16_contigs.fasta NODE_7_length_82067_cov_55.426894 20131 20893 - erm(B)_18 1-762/762 ========/====== 1/1 100.00 98.95 resfinder X66468 erm(B) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae16_contigs.fasta NODE_7_length_82067_cov_55.426894 22541 23335 - aph(3')-III_1 1-795/795 =============== 0/0 100.00 100.00 resfinder M26832 aph(3')-III Amikacin
pneumoniae17_contigs.fasta NODE_1_length_254172_cov_66.598020 71042 71692 - cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae17_contigs.fasta NODE_1_length_254172_cov_66.598020 121616 123535 + tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.27 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae17_contigs.fasta NODE_1_length_254172_cov_66.598020 125261 126724 - msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae17_contigs.fasta NODE_1_length_254172_cov_66.598020 126844 128061 - mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae18_contigs.fasta NODE_1_length_218756_cov_70.198720 117903 119366 - msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae18_contigs.fasta NODE_1_length_218756_cov_70.198720 119486 120703 - mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae18_contigs.fasta NODE_2_length_191208_cov_64.194715 168211 170130 + tet(M)_12 1-1920/1920 =============== 0/0 100.00 99.74 resfinder FR671418 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae19_contigs.fasta NODE_5_length_118160_cov_86.393562 54832 56049 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae19_contigs.fasta NODE_5_length_118160_cov_86.393562 56169 57632 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae19_contigs.fasta NODE_5_length_118160_cov_86.393562 59358 61277 - tet(M)_2 1-1920/1920 =============== 0/0 100.00 100.00 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae1_contigs.fasta NODE_4_length_82142_cov_151.982287 8431 10350 - tet(M)_12 1-1920/1920 =============== 0/0 100.00 99.84 resfinder FR671418 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae1_contigs.fasta NODE_4_length_82142_cov_151.982287 20265 21027 - erm(B)_18 1-762/762 ========/====== 1/1 100.00 98.82 resfinder X66468 erm(B) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae1_contigs.fasta NODE_4_length_82142_cov_151.982287 22678 23472 - aph(3')-III_1 1-795/795 =============== 0/0 100.00 100.00 resfinder M26832 aph(3')-III Amikacin
pneumoniae20_contigs.fasta NODE_4_length_130980_cov_67.245945 33131 33893 + erm(B)_18 1-762/762 ========/====== 1/1 100.00 98.95 resfinder X66468 erm(B) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae20_contigs.fasta NODE_4_length_130980_cov_67.245945 43811 45730 + tet(M)_8 1-1920/1920 =============== 0/0 100.00 99.84 resfinder X04388 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae3_contigs.fasta NODE_8_length_81780_cov_82.953123 39078 39728 - cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae3_contigs.fasta NODE_8_length_81780_cov_82.953123 52384 54303 - tet(M)_12 1-1920/1920 =============== 0/0 100.00 99.74 resfinder FR671418 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae3_contigs.fasta NODE_8_length_81780_cov_82.953123 64221 64983 - erm(B)_18 1-762/762 ========/====== 1/1 100.00 98.95 resfinder X66468 erm(B) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae4_contigs.fasta NODE_5_length_123004_cov_90.452887 54143 54793 - cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae4_contigs.fasta NODE_5_length_123004_cov_90.452887 104717 106636 + tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.27 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae4_contigs.fasta NODE_5_length_123004_cov_90.452887 108362 109825 - msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae4_contigs.fasta NODE_5_length_123004_cov_90.452887 109945 111162 - mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae5_contigs.fasta NODE_8_length_79897_cov_92.281982 35198 35960 - erm(B)_18 1-762/762 ========/====== 1/1 100.00 99.61 resfinder X66468 erm(B) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae5_contigs.fasta NODE_8_length_79897_cov_92.281982 37042 38961 - tet(M)_12 1-1920/1920 =============== 0/0 100.00 99.74 resfinder FR671418 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae6_contigs.fasta NODE_4_length_123530_cov_91.138967 54668 55318 - cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae6_contigs.fasta NODE_4_length_123530_cov_91.138967 105243 107162 + tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.27 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae6_contigs.fasta NODE_4_length_123530_cov_91.138967 108888 110351 - msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae6_contigs.fasta NODE_4_length_123530_cov_91.138967 110471 111688 - mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae7_contigs.fasta NODE_4_length_123529_cov_102.698544 11843 13060 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae7_contigs.fasta NODE_4_length_123529_cov_102.698544 13180 14643 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae7_contigs.fasta NODE_4_length_123529_cov_102.698544 16369 18288 - tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.27 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae7_contigs.fasta NODE_4_length_123529_cov_102.698544 68212 68862 + cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae8_contigs.fasta NODE_4_length_123003_cov_94.942138 11843 13060 + mef(A)_2 1-1218/1218 =============== 0/0 100.00 100.00 resfinder U83667 mef(A) Erythromycin;Azithromycin
pneumoniae8_contigs.fasta NODE_4_length_123003_cov_94.942138 13180 14643 + msr(D)_2 1-1464/1464 =============== 0/0 100.00 100.00 resfinder AF274302 msr(D) Erythromycin;Azithromycin;Telithromycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae8_contigs.fasta NODE_4_length_123003_cov_94.942138 16369 18288 - tet(M)_2 1-1920/1920 =============== 0/0 100.00 99.27 resfinder X90939 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae8_contigs.fasta NODE_4_length_123003_cov_94.942138 68212 68862 + cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol
pneumoniae9_contigs.fasta NODE_2_length_142438_cov_79.795755 77462 78224 + erm(B)_18 1-762/762 ========/====== 1/1 100.00 98.95 resfinder X66468 erm(B) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
pneumoniae9_contigs.fasta NODE_2_length_142438_cov_79.795755 88142 90061 + tet(M)_12 1-1920/1920 =============== 0/0 100.00 99.74 resfinder FR671418 tet(M) Doxycycline;Tetracycline;Minocycline
pneumoniae9_contigs.fasta NODE_2_length_142438_cov_79.795755 102717 103367 + cat(pC194)_1 1-651/651 =============== 0/0 100.00 100.00 resfinder NC_002013 cat(pC194) Chloramphenicol