diff --git a/Dockstore.cwl b/Dockstore.cwl index a0d67df..1495fb3 100644 --- a/Dockstore.cwl +++ b/Dockstore.cwl @@ -24,7 +24,7 @@ dct:creator: requirements: - class: DockerRequirement - dockerPull: "quay.io/ucsc_cgl/dockstore-tool-runner:1.0.14" + dockerPull: "quay.io/ucsc_cgl/dockstore-tool-runner:1.0.16" hints: - class: ResourceRequirement coresMin: 1 diff --git a/README.md b/README.md index c9bd977..4cffb49 100644 --- a/README.md +++ b/README.md @@ -99,7 +99,7 @@ Most people, other than developers of this tool, will use the Dockstore CLI to i # patch in /usr/local/lib/python2.7/dist-packages/cwltool # make a tmpdir like /datastore - docker build -t quay.io/ucsc_cgl/dockstore-tool-runner:1.0.14 . + docker build -t quay.io/ucsc_cgl/dockstore-tool-runner:1.0.16 . # fill in your JSON from Dockstore.json template as Dockstore.my.json mkdir /datastore; chown ubuntu:ubuntu /datastore/ # local execution @@ -107,7 +107,7 @@ Most people, other than developers of this tool, will use the Dockstore CLI to i # as root in /datastore TMPDIR=/datastore dockstore tool launch --entry ~ubuntu/gitroot/BD2KGenomics/dcc-dockstore-tool-runner/Dockstore.cwl --local-entry --json ~ubuntu/gitroot/BD2KGenomics/dcc-dockstore-tool-runner/Dockstore.my.json # execute published on dockstore (this is the way most people will use this tool!) - dockstore tool launch --entry quay.io/ucsc_cgl/dockstore-tool-runner:1.0.14 --json Dockstore.my.json + dockstore tool launch --entry quay.io/ucsc_cgl/dockstore-tool-runner:1.0.16 --json Dockstore.my.json # running you see it launch the cwltool command, you mind find this useful while debugging cwltool --enable-dev --non-strict --enable-net --outdir /datastore/./datastore/launcher-ff6b55b3-52e8-430c-9a70-1ff295332698/outputs/ --tmpdir-prefix /datastore/./datastore/launcher-ff6b55b3-52e8-430c-9a70-1ff295332698/working/ /home/ubuntu/gitroot/BD2KGenomics/dcc-dockstore-tool-runner/Dockstore.cwl /datastore/./datastore/launcher-ff6b55b3-52e8-430c-9a70-1ff295332698/workflow_params.json