From 77951c79a6c439286f96ea70c65baa590ad10165 Mon Sep 17 00:00:00 2001 From: Brian O'Connor Date: Fri, 23 Dec 2016 11:03:58 -0800 Subject: [PATCH] updated version --- Dockstore.cwl | 2 +- README.md | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/Dockstore.cwl b/Dockstore.cwl index fc63e23..45d1357 100644 --- a/Dockstore.cwl +++ b/Dockstore.cwl @@ -24,7 +24,7 @@ dct:creator: requirements: - class: DockerRequirement - dockerPull: "quay.io/ucsc_cgl/dockstore-tool-runner:1.0.6" + dockerPull: "quay.io/ucsc_cgl/dockstore-tool-runner:1.0.7" hints: - class: ResourceRequirement coresMin: 1 diff --git a/README.md b/README.md index 01fd496..aa4ec35 100644 --- a/README.md +++ b/README.md @@ -68,7 +68,7 @@ Build the docker image: # patch in /usr/local/lib/python2.7/dist-packages/cwltool # make a tmpdir like /datastore - docker build -t quay.io/ucsc_cgl/dockstore-tool-runner:1.0.0 . + docker build -t quay.io/ucsc_cgl/dockstore-tool-runner:1.0.7 . # fill in your JSON from Dockstore.json template as Dockstore.my.json mkdir /datastore; chown ubuntu:ubuntu /datastore/ # local execution @@ -76,7 +76,7 @@ Build the docker image: # as root in /datastore TMPDIR=/datastore dockstore tool launch --entry ~ubuntu/gitroot/BD2KGenomics/dcc-dockstore-tool-runner/Dockstore.cwl --local-entry --json ~ubuntu/gitroot/BD2KGenomics/dcc-dockstore-tool-runner/Dockstore.my.json # execute published on dockstore - dockstore tool launch --entry quay.io/ucsc_cgl/dockstore-tool-runner:1.0.0 --json Dockstore.my.json + dockstore tool launch --entry quay.io/ucsc_cgl/dockstore-tool-runner:1.0.7 --json Dockstore.my.json # running you see it launch cwltool --enable-dev --non-strict --enable-net --outdir /datastore/./datastore/launcher-ff6b55b3-52e8-430c-9a70-1ff295332698/outputs/ --tmpdir-prefix /datastore/./datastore/launcher-ff6b55b3-52e8-430c-9a70-1ff295332698/working/ /home/ubuntu/gitroot/BD2KGenomics/dcc-dockstore-tool-runner/Dockstore.cwl /datastore/./datastore/launcher-ff6b55b3-52e8-430c-9a70-1ff295332698/workflow_params.json