diff --git a/combined_pillars_case_data.csv b/data/combined_pillars_case_data.csv similarity index 100% rename from combined_pillars_case_data.csv rename to data/combined_pillars_case_data.csv diff --git a/pillar1_case_data.csv b/data/pillar1_case_data.csv similarity index 100% rename from pillar1_case_data.csv rename to data/pillar1_case_data.csv diff --git a/pillar2_case_data.csv b/data/pillar2_case_data.csv similarity index 100% rename from pillar2_case_data.csv rename to data/pillar2_case_data.csv diff --git a/data/pillar2_case_data_IoW.csv b/data/pillar2_case_data_IoW.csv new file mode 100644 index 0000000..c160900 --- /dev/null +++ b/data/pillar2_case_data_IoW.csv @@ -0,0 +1,79 @@ +LTLA_name,specimen_date,Pillar1,Pillar2,total +Isle of Wight,04-Mar-20,1,,1 +Isle of Wight,10-Mar-20,1,,1 +Isle of Wight,20-Mar-20,1,,1 +Isle of Wight,21-Mar-20,1,,1 +Isle of Wight,22-Mar-20,4,,4 +Isle of Wight,23-Mar-20,2,,2 +Isle of Wight,25-Mar-20,1,,1 +Isle of Wight,26-Mar-20,1,,1 +Isle of Wight,27-Mar-20,1,,1 +Isle of Wight,28-Mar-20,2,,2 +Isle of Wight,30-Mar-20,3,,3 +Isle of Wight,31-Mar-20,1,,1 +Isle of Wight,01-Apr-20,7,,7 +Isle of Wight,02-Apr-20,1,,1 +Isle of Wight,03-Apr-20,1,,1 +Isle of Wight,04-Apr-20,3,,3 +Isle of Wight,05-Apr-20,2,,2 +Isle of Wight,06-Apr-20,4,,4 +Isle of Wight,07-Apr-20,2,,2 +Isle of Wight,08-Apr-20,5,,5 +Isle of Wight,09-Apr-20,2,,2 +Isle of Wight,10-Apr-20,5,,5 +Isle of Wight,11-Apr-20,2,,2 +Isle of Wight,12-Apr-20,2,,2 +Isle of Wight,13-Apr-20,1,,1 +Isle of Wight,15-Apr-20,4,,4 +Isle of Wight,16-Apr-20,8,,8 +Isle of Wight,17-Apr-20,1,,1 +Isle of Wight,18-Apr-20,3,1,4 +Isle of Wight,19-Apr-20,1,,1 +Isle of Wight,21-Apr-20,6,,6 +Isle of Wight,22-Apr-20,4,,4 +Isle of Wight,23-Apr-20,10,,10 +Isle of Wight,24-Apr-20,9,16,25 +Isle of Wight,25-Apr-20,1,9,10 +Isle of Wight,26-Apr-20,,17,17 +Isle of Wight,27-Apr-20,4,2,6 +Isle of Wight,28-Apr-20,9,,9 +Isle of Wight,29-Apr-20,8,26,34 +Isle of Wight,30-Apr-20,1,5,6 +Isle of Wight,01-May-20,12,4,16 +Isle of Wight,02-May-20,6,11,17 +Isle of Wight,03-May-20,1,2,3 +Isle of Wight,04-May-20,3,8,11 +Isle of Wight,05-May-20,1,4,5 +Isle of Wight,06-May-20,2,6,8 +Isle of Wight,07-May-20,4,10,14 +Isle of Wight,08-May-20,1,6,7 +Isle of Wight,09-May-20,1,2,3 +Isle of Wight,10-May-20,1,1,2 +Isle of Wight,11-May-20,1,7,8 +Isle of Wight,12-May-20,3,3,6 +Isle of Wight,13-May-20,7,7,14 +Isle of Wight,14-May-20,4,3,7 +Isle of Wight,15-May-20,5,7,12 +Isle of Wight,16-May-20,1,,1 +Isle of Wight,18-May-20,7,3,10 +Isle of Wight,19-May-20,2,6,8 +Isle of Wight,20-May-20,2,2,4 +Isle of Wight,21-May-20,4,3,7 +Isle of Wight,22-May-20,1,3,4 +Isle of Wight,23-May-20,1,3,4 +Isle of Wight,24-May-20,1,,1 +Isle of Wight,25-May-20,,1,1 +Isle of Wight,26-May-20,3,2,5 +Isle of Wight,28-May-20,,14,14 +Isle of Wight,29-May-20,,5,5 +Isle of Wight,31-May-20,1,,1 +Isle of Wight,02-Jun-20,,1,1 +Isle of Wight,03-Jun-20,,1,1 +Isle of Wight,04-Jun-20,,3,3 +Isle of Wight,05-Jun-20,,1,1 +Isle of Wight,06-Jun-20,,1,1 +Isle of Wight,07-Jun-20,1,,1 +Isle of Wight,09-Jun-20,,1,1 +Isle of Wight,12-Jun-20,1,2,3 +Isle of Wight,15-Jun-20,,3,3 +Isle of Wight,18-Jun-20,,1,1 \ No newline at end of file diff --git a/population_by_region.csv b/data/population_by_region.csv similarity index 100% rename from population_by_region.csv rename to data/population_by_region.csv diff --git a/time_series_R.csv b/data/time_series_R.csv similarity index 100% rename from time_series_R.csv rename to data/time_series_R.csv diff --git a/Nowcast_IoW.png b/figure/Nowcast_IoW.png similarity index 100% rename from Nowcast_IoW.png rename to figure/Nowcast_IoW.png diff --git a/figure/analysis.1-1.png b/figure/analysis.1-1.png new file mode 100644 index 0000000..229fc87 Binary files /dev/null and b/figure/analysis.1-1.png differ diff --git a/figure/analysis.both.1-1.png b/figure/analysis.both.1-1.png new file mode 100644 index 0000000..229fc87 Binary files /dev/null and b/figure/analysis.both.1-1.png differ diff --git a/figure/incidence.p1.and.p2-1.png b/figure/incidence.p1.and.p2-1.png new file mode 100644 index 0000000..2e69c16 Binary files /dev/null and b/figure/incidence.p1.and.p2-1.png differ