From 7afbafefb07427770bc3a560f2e6219facef1bcf Mon Sep 17 00:00:00 2001 From: trvinh Date: Fri, 24 Nov 2023 14:52:57 +0100 Subject: [PATCH] update build check --- .github/workflows/github_build.yml | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/.github/workflows/github_build.yml b/.github/workflows/github_build.yml index be5c983..f0e7b5a 100644 --- a/.github/workflows/github_build.yml +++ b/.github/workflows/github_build.yml @@ -60,14 +60,21 @@ jobs: fas.calcComplexity -i anno_output/test_annofas.json echo "*** TEST FAS.GETDOMAINS..." fas.getDomains -j anno_output/test_annofas.json -p A0A1S4GN31 -o A0A1S4GN31.domains - echo "*** TEST FAS.SPLITJSON..." + echo "*** TEST FAS.SPLITANNO..." echo "A0A1W5C929" > id.txt - fas.splitJson -x id.txt -i anno_output/test_annofas.json -o anno_output/out.json + fas.splitAnno -x id.txt -i anno_output/test_annofas.json -o anno_output/out.json echo "*** TEST FAS.RUNMULTITAXA..." cp anno_output/test_annofas.json anno_output/spec_a.json cp anno_output/test_annofas.json anno_output/spec_b.json echo -e "A0A1U7F4Y7\tspec_a\tA0A1S4GN82\tspec_b\nA0A1U7F5Z4\tspec_a\tA0A1S4GN82\tspec_b" > test_multi.txt fas.runMultiTaxa --input test_multi.txt -a anno_output -o fas_output + ls fas_output + echo "*** TEST FAS.MERGEJSON..." + fas.mergeJson -i fas_output -n merged_json -o fas_output + echo "*** TEST FAS.MERGEANNO..." + fas.mergeAnno -i anno_output/ -n merged_anno -o anno_output + echo "*** TEST FAS.UPDATEANNO..." + fas.updateAnno --new anno_output/spec_a.json --old anno_output/test_annofas.json echo "*** TEST FAS.RUNFDOGFAS..." wget https://github.com/BIONF/data4travis/raw/main/fas_test.tar.gz &> /dev/null tar -xf fas_test.tar.gz