Hello and welcome to marineSABRES WP5 Task 5.3 code sharing platform!
The /wapping4WP6 folder contains the functions developed in WP5 to be used in WP6 to place in the backend of the DSS.
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utils.R contains all functionality required for the analyses
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Demo.R contains a demo for Macaronesia with description of function input
The /FCM matrix projections folder includes the analyses and output from the PESTLE analyses.
The /R folder contains code for the qualitative (boolean) and semi-quantitative analyses of SES graphs.
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R code walkthrough of pipeline with ..r contains a rough version of the SES analysis pipeline
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loop_analysis.r goes through loop analysis of signed SES in R
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boolean.r goes through stability analyses for boolean network
Currently Boolean approaches are used as an entry point to understand a freshly produced SES and then move to semi-quantitative (loop analysis) for a subset of possible states as well as quantitative simulations (matrix projection) to answer more precise questions.