0.5.1

New Features

• Timelapse functionality is extended to tracking data: tracking timelapse data automatically detected when using 4D images and measurements without a column named "frame"

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #96
• Increase code coverage: Making tests for plotter utilities by @Cryaaa in #101
• Bugfix: Fix the license file by @haesleinhuepf in #99
• adding acknowledgements to readme by @haesleinhuepf in #102
• Improve documentation: add quick links to readme by @lazigu in #106
• Bugfix: fix tests by @haesleinhuepf in #109
• Bugfix: don't redraw plot in case the plot is invisible by @haesleinhuepf in #108
• Reintroduction of feature: make option to have tracking data to plot by @Cryaaa in #105

Full Changelog: 0.5.0...0.5.1

0.5.0

New Features

• Timelapse support for:
  • Measurements: automatically detects timelapse data as shape (time, z, y, x) for 3D data and (time, z =1, y, x) for 2D data
  • Plotting: datapoints of current frame highlighted in plot, plotting features against frame is possible.
• Plotting point sizes and transparency dynamically change with number of datapoints
• Properties are auto updated in the plotting, clustering and dimnensionality reduction algorithms

What's Changed

• Timelapse support by @Cryaaa and @lazigu in #77
• bugfix: remove layer interactivity and restore zoom/pan/tilt by @haesleinhuepf in #80
• Added troubleshooting information for Mac users by @jo-mueller in #87
• Auto update properties in widgets by @Cryaaa in #91

Full Changelog: 0.4.0...0.5.0

0.4.0

New Features

• Progress bar is now displayed in napari status bar
• Implemented multithreading, which prevents not responding napari viewer

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #75
• More declarative Conda activation by @lucasSaavedra123 in #74
• Removing the setting of the backend by @Cryaaa in #78
• Implement progress bar, multithreading by @lazigu in #44

Backwards compatibility breaking changes:

• Implementing progress bar, multithreading in #44 caused the change of return type of clustering and dimensionality reduction functions. Now a tuple is returned, where the first item is algorithm name and the second is the result.

New Contributors

• @lucasSaavedra123 made their first contribution in #74

Full Changelog: 0.3.0...0.4.0

0.3.0

New Features

• New dimensionality reduction algorithm: Principal Component Analysis (PCA) by @Cryaaa in #46
• New clustering algorithms: Gaussian Mixture Model (GMM), Mean Shift (MS), Agglomerative clustering (AC) by @haesleinhuepf in #66
• Multiple selections in different colours in the scatter plot by @haesleinhuepf in #67
• Possibility to add custom results column name by @lazigu in #73

Bug Fixes

• Fix displayed region properties in napari status bar @haesleinhuepf in #59
• Add dask arrays support by @zoccoler in #50
• Fix NaNs in measurements (avoid errors during dimensionality reduction and clustering) by @jo-mueller in #70
• Fix unauthenticated git protocol error by @jo-mueller in #64

Improvements

• Update troubleshooting steps by @jo-mueller in #41
• Add tests by @jo-mueller in #40
• Add Codecov by @lazigu in #53
• Add DOI badge by @haesleinhuepf in #42
• Add pre-commit by @lazigu in #49
• Add napari hub categories by @lazigu in #52

Full Changelog: 0.2.2...0.3.0

0.2.2

Bug fix:

• Fix the problem that made the plotting not work with napari=0.4.13

0.2.1

Bugfix:

• Icons folder was not distributed.

0.2.0

New features

• HDBSCAN clustering algorithm is now available to choose from in the Clustering widget by @lazigu in #29
• Standardization option in Dimensionality Reduction and Clustering widgets by @lazigu in #29. In the previous release, standardization was performed under the hood only before dimensionality reduction without an option to disable it.
• Hover question marks for a pop-up text for getting more information about some parameters by @lazigu in #33
• Two new buttons: 'Restore Defaults' and 'Update Selection Boxes' by @lazigu in #25
• New color toolbar (white) for better visibility in dark napari mode and tooltips for extra information when hovering over toolbar's buttons by @zoccoler in #34

Enhancement

Under the hood changes to improve the code, make maintenance easier and make visualization of clusters faster.

• Simplify the code using magicgui by @lazigu in #25
• Speeding up visualization of clusters by @Cryaaa in #30
• Updated documentation: updated images of the usage section to reflect UI changes, troubleshooting installation section

Bug fixes

• Fixing loading csv bug by @Cryaaa in #32

Special Thanks

@Czaki for all the feedback and suggestions.

0.1.3

New feature:

• Added t-SNE (t-distributed stochastic neighbour embedding) dimensionality reduction option

Bug fix

• Fixed a bug related to the automatically added 'labels' column when region properties are uploaded from a file

Thanks to @Cryaaa!

0.1.2

Improvement:

• Importing a table from napari skimage regionprops instead of reusing the code. Contributor: @haesleinhuepf

0.1.1

Documentation update