diff --git a/docs/requirements.txt b/docs/requirements.txt deleted file mode 100644 index 31391bd8..00000000 --- a/docs/requirements.txt +++ /dev/null @@ -1,3 +0,0 @@ -Sphinx==3.4.3 -sphinx_rtd_theme==0.5.1 -imagecodecs diff --git a/poetry.lock b/poetry.lock index 4c149be9..9cd86669 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,6 +1,14 @@ +[[package]] +name = "alabaster" +version = "0.7.12" +description = "A configurable sidebar-enabled Sphinx theme" +category = "dev" +optional = false +python-versions = "*" + [[package]] name = "anyio" -version = "3.3.0" +version = "3.3.1" description = "High level compatibility layer for multiple asynchronous event loop implementations" category = "dev" optional = false @@ -16,14 +24,6 @@ doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"] trio = ["trio (>=0.16)"] -[[package]] -name = "appdirs" -version = "1.4.4" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" -optional = false -python-versions = "*" - [[package]] name = "appnope" version = "0.1.2" @@ -48,19 +48,18 @@ test = ["coverage", "flake8", "pexpect", "wheel"] [[package]] name = "argon2-cffi" -version = "20.1.0" +version = "21.1.0" description = "The secure Argon2 password hashing algorithm." category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.5" [package.dependencies] cffi = ">=1.0.0" -six = "*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "wheel", "pre-commit"] -docs = ["sphinx"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "furo", "wheel", "pre-commit"] +docs = ["sphinx", "furo"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] [[package]] @@ -85,6 +84,17 @@ docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +[[package]] +name = "autoflake" +version = "1.4" +description = "Removes unused imports and unused variables" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +pyflakes = ">=1.1.0" + [[package]] name = "babel" version = "2.9.1" @@ -121,25 +131,26 @@ testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3 [[package]] name = "black" -version = "21.7b0" +version = "21.9b0" description = "The uncompromising code formatter." category = "dev" optional = false python-versions = ">=3.6.2" [package.dependencies] -appdirs = "*" click = ">=7.1.2" mypy-extensions = ">=0.4.3" -pathspec = ">=0.8.1,<1" +pathspec = ">=0.9.0,<1" +platformdirs = ">=2" regex = ">=2020.1.8" tomli = ">=0.2.6,<2.0.0" typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\""} -typing-extensions = {version = ">=3.7.4", markers = "python_version < \"3.8\""} +typing-extensions = ">=3.10.0.0" [package.extras] colorama = ["colorama (>=0.4.3)"] d = ["aiohttp (>=3.6.0)", "aiohttp-cors (>=0.4.0)"] +jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] python2 = ["typed-ast (>=1.4.2)"] uvloop = ["uvloop (>=0.15.2)"] @@ -235,7 +246,7 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "debugpy" -version = "1.4.1" +version = "1.4.3" description = "An implementation of the Debug Adapter Protocol for Python" category = "dev" optional = false @@ -243,7 +254,7 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" [[package]] name = "decorator" -version = "5.0.9" +version = "5.1.0" description = "Decorators for Humans" category = "dev" optional = false @@ -273,6 +284,14 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "docutils" +version = "0.17.1" +description = "Docutils -- Python Documentation Utilities" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + [[package]] name = "eagerpy" version = "0.29.0" @@ -336,11 +355,11 @@ smmap = ">=3.0.1,<5" [[package]] name = "gitpython" -version = "3.1.20" -description = "Python Git Library" +version = "3.1.23" +description = "GitPython is a python library used to interact with Git repositories" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] gitdb = ">=4.0.1,<5" @@ -371,7 +390,7 @@ robotics = ["mujoco_py (>=1.50)", "imageio"] [[package]] name = "identify" -version = "2.2.13" +version = "2.2.14" description = "File identification library for Python" category = "dev" optional = false @@ -388,6 +407,20 @@ category = "main" optional = false python-versions = ">=3.5" +[[package]] +name = "imagecodecs" +version = "2021.8.26" +description = "Image transformation, compression, and decompression codecs" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +numpy = ">=1.15.1" + +[package.extras] +all = ["matplotlib (>=3.2)", "tifffile (>=2021.1.11)", "numcodecs"] + [[package]] name = "imageio" version = "2.9.0" @@ -407,9 +440,17 @@ full = ["astropy", "gdal", "imageio-ffmpeg", "itk"] gdal = ["gdal"] itk = ["itk"] +[[package]] +name = "imagesize" +version = "1.2.0" +description = "Getting image size from png/jpeg/jpeg2000/gif file" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "importlib-metadata" -version = "4.7.1" +version = "4.8.1" description = "Read metadata from Python packages" category = "dev" optional = false @@ -434,7 +475,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.2.0" +version = "6.4.1" description = "IPython Kernel for Jupyter" category = "dev" optional = false @@ -446,6 +487,7 @@ argcomplete = {version = ">=1.12.3", markers = "python_version < \"3.8.0\""} debugpy = ">=1.0.0,<2.0" importlib-metadata = {version = "<5", markers = "python_version < \"3.8.0\""} ipython = ">=7.23.1,<8.0" +ipython-genutils = "*" jupyter-client = "<8.0" matplotlib-inline = ">=0.1.0,<0.2.0" tornado = ">=4.2,<7.0" @@ -562,7 +604,7 @@ format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator [[package]] name = "jupyter-client" -version = "7.0.1" +version = "7.0.2" description = "Jupyter protocol implementation and client libraries" category = "dev" optional = false @@ -595,7 +637,7 @@ traitlets = "*" [[package]] name = "jupyter-server" -version = "1.10.2" +version = "1.11.0" description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." category = "dev" optional = false @@ -624,7 +666,7 @@ test = ["coverage", "pytest (>=6.0)", "pytest-cov", "pytest-mock", "requests", " [[package]] name = "jupyterlab" -version = "3.1.9" +version = "3.1.11" description = "JupyterLab computational environment" category = "dev" optional = false @@ -657,7 +699,7 @@ pygments = ">=2.4.1,<3" [[package]] name = "jupyterlab-server" -version = "2.7.2" +version = "2.8.1" description = "A set of server components for JupyterLab and JupyterLab like applications ." category = "dev" optional = false @@ -710,7 +752,7 @@ python-dateutil = ">=2.7" [[package]] name = "matplotlib-inline" -version = "0.1.2" +version = "0.1.3" description = "Inline Matplotlib backend for Jupyter" category = "dev" optional = false @@ -827,7 +869,7 @@ python-versions = ">=3.5" [[package]] name = "networkx" -version = "2.6.2" +version = "2.6.3" description = "Python package for creating and manipulating graphs and networks" category = "main" optional = false @@ -909,7 +951,7 @@ pyparsing = ">=2.0.2" [[package]] name = "pandas" -version = "1.3.2" +version = "1.3.3" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false @@ -925,7 +967,7 @@ test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] [[package]] name = "pandocfilters" -version = "1.4.3" +version = "1.5.0" description = "Utilities for writing pandoc filters in python" category = "dev" optional = false @@ -972,7 +1014,7 @@ python-versions = "*" [[package]] name = "pillow" -version = "8.3.1" +version = "8.3.2" description = "Python Imaging Library (Fork)" category = "main" optional = false @@ -980,7 +1022,7 @@ python-versions = ">=3.6" [[package]] name = "platformdirs" -version = "2.2.0" +version = "2.3.0" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false @@ -992,21 +1034,22 @@ test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock [[package]] name = "pluggy" -version = "0.13.1" +version = "1.0.0" description = "plugin and hook calling mechanisms for python" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.dependencies] importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} [package.extras] dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] [[package]] name = "pre-commit" -version = "2.14.0" +version = "2.15.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." category = "dev" optional = false @@ -1078,9 +1121,17 @@ category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +[[package]] +name = "pyflakes" +version = "2.3.1" +description = "passive checker of Python programs" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "pyglet" -version = "1.5.19" +version = "1.5.20" description = "Cross-platform windowing and multimedia library" category = "main" optional = false @@ -1112,7 +1163,7 @@ python-versions = ">=3.6" [[package]] name = "pytest" -version = "6.2.4" +version = "6.2.5" description = "pytest: simple powerful testing with Python" category = "dev" optional = false @@ -1125,7 +1176,7 @@ colorama = {version = "*", markers = "sys_platform == \"win32\""} importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} iniconfig = "*" packaging = "*" -pluggy = ">=0.12,<1.0.0a1" +pluggy = ">=0.12,<2.0" py = ">=1.8.2" toml = "*" @@ -1172,7 +1223,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "1.1.3" +version = "1.1.4" description = "Pseudo terminal support for Windows from Python." category = "dev" optional = false @@ -1343,6 +1394,130 @@ category = "dev" optional = false python-versions = ">=3.5" +[[package]] +name = "snowballstemmer" +version = "2.1.0" +description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "sphinx" +version = "3.4.3" +description = "Python documentation generator" +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.dependencies] +alabaster = ">=0.7,<0.8" +babel = ">=1.3" +colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} +docutils = ">=0.12" +imagesize = "*" +Jinja2 = ">=2.3" +packaging = "*" +Pygments = ">=2.0" +requests = ">=2.5.0" +snowballstemmer = ">=1.1" +sphinxcontrib-applehelp = "*" +sphinxcontrib-devhelp = "*" +sphinxcontrib-htmlhelp = "*" +sphinxcontrib-jsmath = "*" +sphinxcontrib-qthelp = "*" +sphinxcontrib-serializinghtml = "*" + +[package.extras] +docs = ["sphinxcontrib-websupport"] +lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.790)", "docutils-stubs"] +test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"] + +[[package]] +name = "sphinx-rtd-theme" +version = "0.5.1" +description = "Read the Docs theme for Sphinx" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +sphinx = "*" + +[package.extras] +dev = ["transifex-client", "sphinxcontrib-httpdomain", "bump2version"] + +[[package]] +name = "sphinxcontrib-applehelp" +version = "1.0.2" +description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +name = "sphinxcontrib-devhelp" +version = "1.0.2" +description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +name = "sphinxcontrib-htmlhelp" +version = "2.0.0" +description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest", "html5lib"] + +[[package]] +name = "sphinxcontrib-jsmath" +version = "1.0.1" +description = "A sphinx extension which renders display math in HTML via JavaScript" +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.extras] +test = ["pytest", "flake8", "mypy"] + +[[package]] +name = "sphinxcontrib-qthelp" +version = "1.0.3" +description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +name = "sphinxcontrib-serializinghtml" +version = "1.1.5" +description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + [[package]] name = "tensorboardx" version = "2.2" @@ -1357,7 +1532,7 @@ protobuf = ">=3.8.0" [[package]] name = "terminado" -version = "0.11.1" +version = "0.12.1" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." category = "dev" optional = false @@ -1392,7 +1567,7 @@ python-versions = ">=3.6" [[package]] name = "tifffile" -version = "2021.8.8" +version = "2021.8.30" description = "Read and write TIFF files" category = "main" optional = false @@ -1473,15 +1648,12 @@ telegram = ["requests"] [[package]] name = "traitlets" -version = "5.0.5" +version = "5.1.0" description = "Traitlets Python configuration system" category = "dev" optional = false python-versions = ">=3.7" -[package.dependencies] -ipython-genutils = "*" - [package.extras] test = ["pytest"] @@ -1495,7 +1667,7 @@ python-versions = "*" [[package]] name = "typing-extensions" -version = "3.10.0.0" +version = "3.10.0.2" description = "Backported and Experimental Type Hints for Python 3.5+" category = "main" optional = false @@ -1577,16 +1749,16 @@ testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytes [metadata] lock-version = "1.1" python-versions = ">=3.7.10,<3.10" -content-hash = "652299dd01e0bceddab9e9a26faec454759f54abd5442e0d368e4d81cf1a0014" +content-hash = "153d6ca7902e05bf4efe312cd197e8d92ea71db74c504cecadb9ad3d5d724330" [metadata.files] -anyio = [ - {file = "anyio-3.3.0-py3-none-any.whl", hash = "sha256:929a6852074397afe1d989002aa96d457e3e1e5441357c60d03e7eea0e65e1b0"}, - {file = "anyio-3.3.0.tar.gz", hash = "sha256:ae57a67583e5ff8b4af47666ff5651c3732d45fd26c929253748e796af860374"}, +alabaster = [ + {file = "alabaster-0.7.12-py2.py3-none-any.whl", hash = "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359"}, + {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"}, ] -appdirs = [ - {file = 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