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bia_mifa_models.owl.ttl
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bia_mifa_models.owl.ttl
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@prefix bia_mifa_models: <https://w3id.org/BioImage-Archive/bia-mifa-models/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix linkml: <https://w3id.org/linkml/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
bia_mifa_models:Annotations a owl:Class,
linkml:ClassDefinition ;
rdfs:label "Annotations" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:annotation_coverage ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_criteria ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:annotation_overview ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:annotation_confidence_level ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_method ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_overview ],
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owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:annotation_criteria ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_overview ],
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owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_method ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:annotation_coverage ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_confidence_level ],
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owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:annotation_confidence_level ],
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owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:annotation_method ],
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owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:annotation_criteria ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_coverage ],
bia_mifa_models:AuthorCollection,
bia_mifa_models:FileLevelMetadataCollection ;
skos:definition "A set of annotations for an AI-ready dataset" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:Study a owl:Class,
linkml:ClassDefinition ;
rdfs:label "Study" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:license ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:Uriorcurie ;
owl:onProperty bia_mifa_models:ai_models_trained ],
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owl:onProperty bia_mifa_models:title ],
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owl:onProperty bia_mifa_models:acknowledgements ],
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owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:acknowledgements ],
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owl:allValuesFrom linkml:String ;
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owl:onProperty bia_mifa_models:keywords ],
[ a owl:Restriction ;
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owl:onProperty bia_mifa_models:title ],
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owl:onProperty bia_mifa_models:keywords ],
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owl:onProperty bia_mifa_models:funding_statement ],
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owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:funding_statement ],
[ a owl:Restriction ;
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owl:onProperty bia_mifa_models:ai_models_trained ],
[ a owl:Restriction ;
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owl:onProperty bia_mifa_models:description ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:funding_statement ],
bia_mifa_models:AuthorCollection,
bia_mifa_models:GrantReferenceCollection,
bia_mifa_models:Links,
bia_mifa_models:PublicationsCollection ;
skos:definition "General information about the study" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:Version a owl:Class,
linkml:ClassDefinition ;
rdfs:label "Version" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:changes ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:version ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:timestamp ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:Uriorcurie ;
owl:onProperty bia_mifa_models:previous_version ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:changes ],
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owl:minCardinality 1 ;
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owl:minCardinality 1 ;
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owl:onProperty bia_mifa_models:changes ],
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owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:version ],
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owl:onProperty bia_mifa_models:previous_version ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:Datetime ;
owl:onProperty bia_mifa_models:timestamp ] ;
skos:definition "Information about the dataset version" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:Author a owl:Class,
linkml:ClassDefinition ;
rdfs:label "Author" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:author_last_name ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:email ],
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owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:author_first_name ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:author_last_name ],
[ a owl:Restriction ;
owl:allValuesFrom [ a rdfs:Datatype ;
owl:onDatatype xsd:string ;
owl:withRestrictions ( [ xsd:pattern "^\\S+@[\\S+\\.]+\\S+" ] ) ] ;
owl:onProperty bia_mifa_models:email ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:orcid_id ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:author_first_name ],
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owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:role ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:email ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:role ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:Uriorcurie ;
owl:onProperty bia_mifa_models:orcid_id ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:author_first_name ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:author_last_name ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:orcid_id ],
bia_mifa_models:OrganisationInfoCollection ;
skos:definition "Information about the authors" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:FileLevelMetadata a owl:Class,
linkml:ClassDefinition ;
rdfs:label "FileLevelMetadata" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom linkml:Datetime ;
owl:onProperty bia_mifa_models:annotation_creation_time ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:annotation_creation_time ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:source_image_id ],
[ a owl:Restriction ;
owl:allValuesFrom bia_mifa_models:AnnotationType ;
owl:onProperty bia_mifa_models:annotation_type ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:spatial_information ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:annotation_id ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:transformations ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:spatial_information ],
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owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_id ],
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owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:spatial_information ],
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owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_creation_time ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:transformations ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:source_image_id ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:source_image_id ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_id ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:transformations ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:annotation_type ] ;
skos:definition "metadata atributes that must be detailed at the file level" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:FileLevelMetadataCollection a owl:Class,
linkml:ClassDefinition ;
rdfs:label "FileLevelMetadataCollection" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom bia_mifa_models:FileLevelMetadata ;
owl:onProperty bia_mifa_models:file_metadata ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:file_metadata ] ;
skos:definition "A holder for FileLevelMetadata objects" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:GrantReference a owl:Class,
linkml:ClassDefinition ;
rdfs:label "GrantReference" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:funder ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:grant_id ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:funder ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:funder ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:grant_id ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:grant_id ] ;
skos:definition "Information about grant ID and funding body that funded the study" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:GrantReferenceCollection a owl:Class,
linkml:ClassDefinition ;
rdfs:label "GrantReferenceCollection" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:grants ],
[ a owl:Restriction ;
owl:allValuesFrom bia_mifa_models:GrantReference ;
owl:onProperty bia_mifa_models:grants ] ;
skos:definition "A holder for GrantReference objects" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:Links a owl:Class,
linkml:ClassDefinition ;
rdfs:label "Links" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:link_url ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:Uriorcurie ;
owl:onProperty bia_mifa_models:link_url ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:link_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:link_description ] ;
skos:definition "Links related to the study" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:OrganisationInfo a owl:Class,
linkml:ClassDefinition ;
rdfs:label "OrganisationInfo" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:organisation_name ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:address ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:ror_id ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:address ],
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owl:minCardinality 0 ;
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owl:maxCardinality 1 ;
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owl:allValuesFrom linkml:String ;
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owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:organisation_name ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:Uriorcurie ;
owl:onProperty bia_mifa_models:ror_id ] ;
skos:definition "Information about the organisation the author is affiliated with" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:OrganisationInfoCollection a owl:Class,
linkml:ClassDefinition ;
rdfs:label "OrganisationInfoCollection" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:organisation ],
[ a owl:Restriction ;
owl:allValuesFrom bia_mifa_models:OrganisationInfo ;
owl:onProperty bia_mifa_models:organisation ] ;
skos:definition "A holder for OrganisationInfo objects" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:Publications a owl:Class,
linkml:ClassDefinition ;
rdfs:label "Publications" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom linkml:Uriorcurie ;
owl:onProperty bia_mifa_models:publication_doi ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:publication_year ],
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owl:minCardinality 1 ;
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owl:allValuesFrom linkml:Uriorcurie ;
owl:onProperty bia_mifa_models:pubmed_id ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:publication_authors ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:publication_year ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:pubmed_id ],
[ a owl:Restriction ;
owl:allValuesFrom linkml:String ;
owl:onProperty bia_mifa_models:publication_title ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:pubmed_id ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:publication_doi ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:publication_authors ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty bia_mifa_models:publication_doi ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty bia_mifa_models:publication_title ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:publication_year ] ;
skos:definition "Information about any publications associated with the dataset" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:PublicationsCollection a owl:Class,
linkml:ClassDefinition ;
rdfs:label "PublicationsCollection" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom bia_mifa_models:Publications ;
owl:onProperty bia_mifa_models:publications ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:publications ] ;
skos:definition "A holder for Publications objects" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
<https://creativecommons.org/licenses/by/4.0/> a owl:Class,
bia_mifa_models:LicenseType ;
rdfs:label "CC_BY" ;
rdfs:subClassOf bia_mifa_models:LicenseType .
<https://creativecommons.org/publicdomain/zero/1.0/> a owl:Class,
bia_mifa_models:LicenseType ;
rdfs:label "CC0" ;
rdfs:subClassOf bia_mifa_models:LicenseType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#bounding_boxes> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "bounding_boxes" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#class_labels> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "class_labels" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#counts> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "counts" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#derived_annotations> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "derived_annotations" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#geometrical_annotations> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "geometrical_annotations" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#graphs> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "graphs" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#other> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "other" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#point_annotations> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "point_annotations" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#segmentation_mask> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "segmentation_mask" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#tracks> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "tracks" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#weak_annotations> a owl:Class,
bia_mifa_models:AnnotationType ;
rdfs:label "weak_annotations" ;
rdfs:subClassOf bia_mifa_models:AnnotationType .
bia_mifa_models:AuthorCollection a owl:Class,
linkml:ClassDefinition ;
rdfs:label "AuthorCollection" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom bia_mifa_models:Author ;
owl:onProperty bia_mifa_models:authors ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty bia_mifa_models:authors ] ;
skos:definition "A holder for Author objects" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:ai_models_trained a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "ai_models_trained" ;
rdfs:range linkml:Uriorcurie ;
skos:definition "Link to the models that have been trained with this dataset (if any). This could be links to GitHub or repositories like the BioImage Zoo." ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_type a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_type" ;
rdfs:range bia_mifa_models:AnnotationType ;
skos:definition "Annotation type, for example class labels, segmentation masks, counts..." ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:authors a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "authors" ;
skos:definition "a collection of the authors of a study" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:file_metadata a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "file_metadata" ;
skos:definition "a collection of the file level metadata for each annotation" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:grants a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "grants" ;
skos:definition "a collection of grant ids and funder names associated with the study" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:keywords a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "keywords" ;
skos:definition "Keywords or tags used to describe the dataset" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:link_description a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "link_description" ;
skos:definition "The description of the linked content" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:link_url a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "link_url" ;
rdfs:range linkml:Uriorcurie ;
skos:definition "URL of relevant link" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:organisation a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "organisation" ;
skos:definition "a collection of the name and address of organisations authors are affiliated with" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:publications a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "publications" ;
skos:definition "a collection of publications associated with a study" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:role a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "role" ;
skos:definition "Role of the author when creating the dataset" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:acknowledgements a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "acknowledgements" ;
skos:definition "Any people or groups that should be acknowledged as part of the dataset" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:address a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "address" ;
skos:definition "Organisation address" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_confidence_level a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_confidence_level" ;
skos:definition "Confidence on annotation accuracy" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_coverage a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_coverage" ;
skos:definition "Which images from the dataset were annotated, and what percentage of the data has been annotated from what is available" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_creation_time a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_creation_time" ;
rdfs:range linkml:Datetime ;
skos:definition "Date and time when the annotation was created" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_criteria a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_criteria" ;
skos:definition "Rules used to generate annotations" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_id a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_id" ;
skos:definition "The identifier for the annotation" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_method a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_method" ;
skos:definition "Description of how the annotations were created. For example, were the annotations crowdsourced or expertly annotated, produced by a human or software, what software was used, when were the annotations created, protocols used for consensus and quality assurance" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:annotation_overview a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "annotation_overview" ;
skos:definition "Short descriptive summary indicating the type of annotation and how it was generated" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:author_first_name a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "author_first_name" ;
skos:definition "First name for an author" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:author_last_name a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "author_last_name" ;
skos:definition "Last name for an author" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:changes a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "changes" ;
rdfs:range linkml:String ;
skos:definition "Textual description of changes compared to previous version" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:description a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "description" ;
skos:definition "Brief description of the detaset. Must contain the biological application of the dataset" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:email a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "email" ;
rdfs:range [ a rdfs:Datatype ;
owl:onDatatype xsd:string ;
owl:withRestrictions ( [ xsd:pattern "^\\S+@[\\S+\\.]+\\S+" ] ) ] ;
skos:definition "Email address of a person" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:funder a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "funder" ;
skos:definition "The funding body provididing support" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:funding_statement a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "funding_statement" ;
skos:definition "Description of how the study was funded" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:grant_id a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "grant_id" ;
skos:definition "The identifier for the grant" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:license a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "license" ;
rdfs:range bia_mifa_models:LicenseType ;
skos:definition "The license under which the data are available" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:orcid_id a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "orcid_id" ;
rdfs:range linkml:Uriorcurie ;
skos:definition "A unique identifier for an author" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:organisation_name a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "organisation_name" ;
skos:definition "Organisation name" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:previous_version a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "previous_version" ;
rdfs:range linkml:Uriorcurie ;
skos:definition "Pointer to previous version" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:publication_authors a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "publication_authors" ;
skos:definition "Authors of associated publication" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:publication_doi a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "publication_doi" ;
rdfs:range linkml:Uriorcurie ;
skos:definition "Digital Object Identifier (DOI)" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:publication_title a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "publication_title" ;
skos:definition "The title for a publication associated to the dataset" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:publication_year a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "publication_year" ;
skos:definition "Year of publication" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:pubmed_id a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "pubmed_id" ;
rdfs:range linkml:Uriorcurie ;
skos:definition "Identifier for journal articles/abstracts in PubMed" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:ror_id a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "ror_id" ;
rdfs:range linkml:Uriorcurie ;
skos:definition "Identifier for the Research Organization Registry" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:source_image_id a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "source_image_id" ;
skos:definition "identifier of the source image from which the annotation originated" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:spatial_information a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "spatial_information" ;
skos:definition "Spatial information for non-pixel annotations" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:timestamp a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "timestamp" ;
rdfs:range linkml:Datetime ;
skos:definition "Date and time when the version was created" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:title a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "title" ;
skos:definition "The title for your dataset. This will be displayed when search results including your data are shown. Often this will be the same as an associated publication." ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:transformations a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "transformations" ;
skos:definition "Any transformations required to link the images to the annotations" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:version a owl:ObjectProperty,
linkml:SlotDefinition ;
rdfs:label "version" ;
rdfs:range linkml:String ;
skos:definition "Unique version number" ;
skos:inScheme <https://w3id.org/BioImage-Archive/bia-mifa-models> .
bia_mifa_models:LicenseType a owl:Class,
linkml:EnumDefinition ;
owl:unionOf ( <https://creativecommons.org/publicdomain/zero/1.0/> <https://creativecommons.org/licenses/by/4.0/> ) ;
linkml:permissible_values <https://creativecommons.org/licenses/by/4.0/>,
<https://creativecommons.org/publicdomain/zero/1.0/> .
bia_mifa_models:AnnotationType a owl:Class,
linkml:EnumDefinition ;
owl:unionOf ( <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#class_labels> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#bounding_boxes> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#counts> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#derived_annotations> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#geometrical_annotations> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#graphs> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#point_annotations> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#segmentation_mask> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#tracks> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#weak_annotations> <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#other> ) ;
linkml:permissible_values <https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#bounding_boxes>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#class_labels>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#counts>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#derived_annotations>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#geometrical_annotations>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#graphs>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#other>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#point_annotations>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#segmentation_mask>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#tracks>,
<https://w3id.org/BioImage-Archive/bia-mifa-models/AnnotationType#weak_annotations> .
<https://w3id.org/BioImage-Archive/bia-mifa-models> a owl:Ontology ;
rdfs:label "bia-mifa-models" ;
dcterms:license "CC0" ;
dcterms:title "bia-mifa-models" ;
rdfs:seeAlso <https://BioImage-Archive.github.io/bia-mifa-models> ;
skos:definition "Schemas and models for working with the BioImage Archive's MIFA (Metadata, Incentives, Formats and Accessibility) metadata implementation" .