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changelog
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changelog
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-*-change-log-*-
3.2.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 29. July 2019
* Added specific log files for use without queueing system
3.2.0 Anica Scholz <a.scholz@biochem.uni-frankfurt.de> 26. June 2019
* added standard deviation to output files
* updated manual and docs
3.1.1 Anica Scholz <a.scholz@biochem.uni-frankfurt.de> 18. April 2019
* Fixed columns in output table
3.1.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 17. April 2019
* Replaced average reads with uORF/ORF ratios for each replicate
3.0.0 Rick Gelhausen <gelhausr@informatik.uni-freiburg.de> 8. March 2019
* the workflow now uses .bam files as input.
* A second workflow (Preprocessing_Snakefile) is now available to convert .fastq to .bam files.
* all tool versions used are now fixed in order to ensure reproducibility and easier maintenance.
* some conda environment changes ensure faster runtimes.
2.0.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 21.December 2018
* New streamlined ribosome-profiling workflow
* Added computation of ribo_change parameter
* Added support for alternative codons in ORF-finding
* Added warning for missing replicates
* Pinnned all used tool versions for reproducibility
* Accelerated conda environment retrieval
* Extended documentation
* Added warning for missing replicates
* Added p-value computation for ribo_changes
* Clarified cluster config filenames
1.0.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 6. September 2018
* Improvements for report captions
1.0.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 25. August 2018
* Initial version