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Implement an SWC exporter for skeletonized neurons #60

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marwan-abdellah opened this issue Sep 5, 2023 · 2 comments
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Implement an SWC exporter for skeletonized neurons #60

marwan-abdellah opened this issue Sep 5, 2023 · 2 comments
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enhancement New feature or request

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Incrementally, implement a neuron SWC exporter from the skeletonized dataset.
The exporter should:

  1. Initially, export all the valid branches as dendrites, even including the spines.
  2. Categorize the branches into either axons or dendrites.
  3. Recognize the apical dendrites from the basal dendrites.
  4. Filter the spines and export them individually.
@marwan-abdellah marwan-abdellah self-assigned this Sep 5, 2023
@marwan-abdellah marwan-abdellah added the enhancement New feature or request label Sep 5, 2023
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marwan-abdellah commented Sep 6, 2023 •
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First implementation is done and neurons can be exported.
Next: Branch types.

Note: Account for the removed branches due to loop merging.

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Implemented.

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