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Integrate the NIF brain parcellation scheme ontology #100

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MFSY opened this issue Oct 30, 2017 · 5 comments
Open

Integrate the NIF brain parcellation scheme ontology #100

MFSY opened this issue Oct 30, 2017 · 5 comments
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@MFSY @huanxiang @srjimenez @annakristinkaufmann
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in progress new ontologies

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@MFSY
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MFSY commented Oct 30, 2017 •
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In collaboration with NIF, a brain parcellation scheme ontology have been created.

This issue is about integrating the current version of the ontology in bbp domains as sources of brain regions and parcels.

The URIs used should be stable prior to integration.
@MFSY MFSY mentioned this issue Oct 30, 2017
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@MFSY MFSY added in progress and removed next labels Oct 31, 2017
@MFSY
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MFSY commented Nov 1, 2017 •
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A v3.0 of NIFSTD was released. As part of that release, the parcellation scheme ontology is accessible here.

@tgbugs
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tgbugs commented Nov 2, 2017

I need to do another pass on this before it is ready for integration. The identifiers are not stable yet, and the exact representation needs to be tweaked as I discussed with Silvia and Anna one the last call.

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MFSY commented Nov 7, 2017

Thank you @tgbugs for this answer. Do you have an idea of when stable identifiers for the brain parcels will be available ?

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tgbugs commented Nov 7, 2017

My plan is to sit down with the code the Tuesday after SfN, without going into the details that means that realistically I'm shooting for a release on Nov. 27th. Let me know if that works for you all.

@MFSY
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MFSY commented Nov 7, 2017

Sounds good.

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@MFSY @huanxiang @tgbugs @srjimenez @annakristinkaufmann