deploy: 4b66f7d

paradox.json

@@ -1,4 +1,4 @@
 {
   "name" : "docs",
-  "version" : "0.0.0+1-64304504+20230913-1250-SNAPSHOT"
+  "version" : "0.0.0+1-64304504+20230926-1241-SNAPSHOT"
 }

snapshot/contexts/elasticsearch-metadata.json

@@ -3,8 +3,7 @@
     "View": "https://bluebrain.github.io/nexus/vocabulary/View",
     "ElasticSearchView": "https://bluebrain.github.io/nexus/vocabulary/ElasticSearchView",
     "AggregateElasticSearchView": "https://bluebrain.github.io/nexus/vocabulary/AggregateElasticSearchView",
-    "_uuid": "https://bluebrain.github.io/nexus/vocabulary/uuid",
-    "_indexingRev": "https://bluebrain.github.io/nexus/vocabulary/indexingRev"
+    "_uuid": "https://bluebrain.github.io/nexus/vocabulary/uuid"
   },
   "@id": "https://bluebrain.github.io/nexus/contexts/elasticsearch-metadata.json"
 }

snapshot/contexts/elasticsearch.json

@@ -18,8 +18,7 @@
       "viewId": {
         "@type": "@id"
       },
-      "_uuid": "https://bluebrain.github.io/nexus/vocabulary/uuid",
-      "_indexingRev": "https://bluebrain.github.io/nexus/vocabulary/indexingRev"
+      "_uuid": "https://bluebrain.github.io/nexus/vocabulary/uuid"
     },
     "https://bluebrain.github.io/nexus/contexts/pipeline.json"
   ],

snapshot/contexts/remote-contexts.json

@@ -0,0 +1,9 @@
+{
+  "@context": {
+    "@vocab": "https://bluebrain.github.io/nexus/vocabulary/",
+    "remoteContexts": {
+      "@container": "@set"
+    }
+  },
+  "@id": "https://bluebrain.github.io/nexus/contexts/remote-contexts.json"
+}

snapshot/docs/delta/api/acls-api.html

@@ -197,12 +197,15 @@
       <li><a href="../../../docs/delta/api/permissions-api.html" class="page">Permissions</a></li>
       <li><a href="../../../docs/delta/api/realms-api.html" class="page">Realms</a></li>
       <li><a href="../../../docs/delta/api/acls-api.html" class="active page">Access Control Lists</a></li>
+      <li><a href="../../../docs/delta/api/user-permissions-api.html" class="page">User Permissions</a></li>
       <li><a href="../../../docs/delta/api/orgs-api.html" class="page">Organizations</a></li>
       <li><a href="../../../docs/delta/api/projects-api.html" class="page">Projects</a></li>
       <li><a href="../../../docs/delta/api/quotas.html" class="page">Quotas</a></li>
       <li><a href="../../../docs/delta/api/schemas-api.html" class="page">Schemas</a></li>
       <li><a href="../../../docs/delta/api/resources-api.html" class="page">Resources</a></li>
+      <li><a href="../../../docs/delta/api/trial.html" class="page">Trial</a></li>
       <li><a href="../../../docs/delta/api/multi-fetch.html" class="page">Multi fetch</a></li>
+      <li><a href="../../../docs/delta/api/id-resolution.html" class="page">Id Resolution</a></li>
       <li><a href="../../../docs/delta/api/resolvers-api.html" class="page">Resolvers</a></li>
       <li><a href="../../../docs/delta/api/views/index.html" class="page">Views</a>
       <ul>
@@ -222,6 +225,7 @@
       <li><a href="../../../docs/delta/api/events-api.html" class="page">Global events</a></li>
       <li><a href="../../../docs/delta/api/supervision-api.html" class="page">Supervision</a></li>
     </ul></li>
+    <li><a href="../../../docs/delta/metadata.html" class="page">Nexus Metadata</a></li>
     <li><a href="../../../docs/delta/plugins/index.html" class="page">Plugins</a></li>
     <li><a href="../../../docs/delta/benchmarks/index.html" class="page">Benchmarks</a>
     <ul>
@@ -1033,13 +1037,13 @@ <h2><a href="#acl-server-sent-events" name="acl-server-sent-events" class="ancho
 </span>
 </div>
 </a>
-<a href="../../../docs/delta/api/orgs-api.html" title="Organizations" class="md-flex md-footer-nav__link md-footer-nav__link--next" rel="next">
+<a href="../../../docs/delta/api/user-permissions-api.html" title="User Permissions" class="md-flex md-footer-nav__link md-footer-nav__link--next" rel="next">
 <div class="md-flex__cell md-flex__cell--stretch md-footer-nav__title">
 <span class="md-flex__ellipsis">
 <span class="md-footer-nav__direction">
 Next
 </span>
-Organizations
+User Permissions
 </span>
 </div>
 <div class="md-flex__cell md-flex__cell--shrink">

snapshot/docs/delta/api/archives-api.html

@@ -197,12 +197,15 @@
       <li><a href="../../../docs/delta/api/permissions-api.html" class="page">Permissions</a></li>
       <li><a href="../../../docs/delta/api/realms-api.html" class="page">Realms</a></li>
       <li><a href="../../../docs/delta/api/acls-api.html" class="page">Access Control Lists</a></li>
+      <li><a href="../../../docs/delta/api/user-permissions-api.html" class="page">User Permissions</a></li>
       <li><a href="../../../docs/delta/api/orgs-api.html" class="page">Organizations</a></li>
       <li><a href="../../../docs/delta/api/projects-api.html" class="page">Projects</a></li>
       <li><a href="../../../docs/delta/api/quotas.html" class="page">Quotas</a></li>
       <li><a href="../../../docs/delta/api/schemas-api.html" class="page">Schemas</a></li>
       <li><a href="../../../docs/delta/api/resources-api.html" class="page">Resources</a></li>
+      <li><a href="../../../docs/delta/api/trial.html" class="page">Trial</a></li>
       <li><a href="../../../docs/delta/api/multi-fetch.html" class="page">Multi fetch</a></li>
+      <li><a href="../../../docs/delta/api/id-resolution.html" class="page">Id Resolution</a></li>
       <li><a href="../../../docs/delta/api/resolvers-api.html" class="page">Resolvers</a></li>
       <li><a href="../../../docs/delta/api/views/index.html" class="page">Views</a>
       <ul>
@@ -222,6 +225,7 @@
       <li><a href="../../../docs/delta/api/events-api.html" class="page">Global events</a></li>
       <li><a href="../../../docs/delta/api/supervision-api.html" class="page">Supervision</a></li>
     </ul></li>
+    <li><a href="../../../docs/delta/metadata.html" class="page">Nexus Metadata</a></li>
     <li><a href="../../../docs/delta/plugins/index.html" class="page">Plugins</a></li>
     <li><a href="../../../docs/delta/benchmarks/index.html" class="page">Benchmarks</a>
     <ul>
@@ -288,14 +292,13 @@
 </div>
 <div class="md-content__searchable">
 <h1><a href="#archives" name="archives" class="anchor"><span class="anchor-link"></span></a>Archives</h1>
-<p>An archive is a collection of resources stored inside an archive file. The archiving format chosen for this purpose is tar (or tarball). Archive resources are rooted in the <code>/v1/archives/{org_label}/{project_label}/</code> collection.</p>
+<p>An archive is a collection of resources stored inside an archive file. The archiving format chosen for this purpose is ZIP. Archive resources are rooted in the <code>/v1/archives/{org_label}/{project_label}/</code> collection.</p>
 <p>Each archive&hellip; </p>
 <ul>
   <li>belongs to a <code>project</code> identifier by the label <code>{project_label}</code></li>
   <li>inside an <code>organization</code> identifier by the label <code>{org_label}</code></li>
 </ul><div class="callout note tip"><div class="callout-title">Authorization notes</div>
-<p>When modifying archives, the caller must have <code>archives/write</code> permissions on the current path of the project or the ancestor paths.</p>
-<p>When reading archives, the caller must have <code>resources/read</code> permissions on the current path of the project or the ancestor paths.</p>
+<p>For both reading and modifying archives, the caller must have <code>resources/read</code> permissions on the current path of the project or the ancestor paths.</p>
 <p>Please visit <a href="authentication.html">Authentication &amp; authorization</a> section to learn more about it.</p></div>
 <h2><a href="#lifecycle" name="lifecycle" class="anchor"><span class="anchor-link"></span></a>Lifecycle</h2>
 <p>Contrarily to the rest of the platform resources, archives are not persisted resources, given their nature. Therefore there are no update, tag or deprecation operations available on archive resources.</p>
@@ -352,7 +355,7 @@ <h2><a href="#payload" name="payload" class="anchor"><span class="anchor-link"><
     <ul>
       <li>Only allowed for Resource type</li>
       <li>Optional and defaults to compacted</li>
-      <li>Accepts the following values: source (to get the original payload), compacted, expanded, n-triples, dot</li>
+      <li>Accepts the following values: source (to get the original payload), annotated-source (to get the original payload with metadata), compacted, expanded, n-triples, dot</li>
       <li>Can not be present at the same time as <code>originalSource</code> field.</li>
     </ul>
   </li>
@@ -374,10 +377,10 @@ <h2><a href="#create-using-post" name="create-using-post" class="anchor"><span c
   <li>If the <code>@id</code> value is found on the payload, this @id will be used.</li>
   <li>If the <code>@id</code> value is not found on the payload, an @id will be generated as follows: <code>base:{UUID}</code>. The <code>base</code> is  the <code>prefix</code> defined on the resource&rsquo;s project (<code>{project_label}</code>).</li>
 </ul>
-<p>The response will be an HTTP 303 Location redirect, which will point to the url where to consume the archive (tarball).</p>
+<p>The response will be an HTTP 303 Location redirect, which will point to the url where to consume the archive (ZIP).</p>
 <p>The following diagram can help to understand the HTTP exchange <img src="assets/archives/post-redirect-get.png" alt="post-redirect-get" title="Post/Redirect/Get archive" /></p>
 <p><strong>Example</strong></p>
-<p>The following example shows how to create an archive containing 3 files. 2 of them are resources and the other is a file. As a response, the tarball will be offered.</p>
+<p>The following example shows how to create an archive containing 3 files. 2 of them are resources and the other is a file. As a response, the ZIP file will be offered.</p>
 <dl>
   <dt>Request</dt>
   <dd>
@@ -510,24 +513,20 @@ <h2><a href="#create-using-put" name="create-using-put" class="anchor"><span cla
 </dl>
 <p>Note that if the payload contains an @id different from the <code>{archive_id}</code>, the request will fail.</p>
 <h2><a href="#fetch" name="fetch" class="anchor"><span class="anchor-link"></span></a>Fetch</h2>
-<p>When fetching an archive, the response format can be chosen through HTTP content negotiation. In order to fetch the archive metadata, the client can use any of the <a href="content-negotiation.html#supported-mime-types">following MIME types</a>. However, in order to fetch the archive content, the HTTP <code>Accept</code> header should be provided:</p>
-<ul>
-  <li><code>*/*</code> or <code>application/x-tar</code> will return a tar archive (or tarball)</li>
-  <li><code>application/zip</code> will return a zip archive</li>
-</ul><div class="callout note warning"><div class="callout-title">Note</div>
-<p><a href="https://en.wikipedia.org/wiki/Tar_(computing)" title="The limitations of the tar format">The limitations of the tar format</a> makes the usage of archives difficult (among other things, the maximum file name is limited to 100 characters), so its support will be removed in a future release.</p></div>
+<p>When fetching an archive, the response format can be chosen through HTTP content negotiation. In order to fetch the archive metadata, the client can use any of the <a href="content-negotiation.html#supported-mime-types">following MIME types</a>. However, in order to fetch the archive content, the HTTP <code>Accept</code> header should be provided as <code>application/zip</code>.</p>
+<p>@@@</p>
 <p>When downloading the archive, it is possible to ignore resources that does not exist by appending the query parameter <code>ignoreNotFound=true</code> to the fetch link.</p>
 <pre><code>GET /v1/archives/{org_label}/{project_label}/{archive_id}
 GET /v1/archives/{org_label}/{project_label}/{archive_id}?ignoreNotFound=true
 </code></pre>
 <p><strong>Example</strong></p>
 <dl>
-  <dt>Request (tarball)
+  <dt>Request (ZIP)
   </dt>
   <dd>
   <pre class="prettyprint"><button class="snippet-button copy-snippet" title="Copy snippet to clipboard">copy</button><a class="snippet-button go-to-source" href="https://github.com/BlueBrain/nexus/tree/master/docs/src/main/paradox/docs/delta/api/assets/archives/fetch.sh" target="_blank" title="Go to snippet source">source</a><code class="language-sh">curl &quot;http://localhost:8080/v1/archives/myorg/myproject/myarchive&quot; \
-     -H &quot;Accept: application/x-tar&quot; \
-     -o output.tar</code></pre></dd>
+     -H &quot;Accept: application/x-zip&quot; \
+     -o output.zip</code></pre></dd>
   <dt>Request (metadata)
   </dt>
   <dd>
@@ -569,7 +568,7 @@ <h2><a href="#fetch" name="fetch" class="anchor"><span class="anchor-link"></spa
   &quot;_createdAt&quot;: &quot;2021-05-17T14:54:42.939Z&quot;,
   &quot;_createdBy&quot;: &quot;http://localhost:8080/v1/realms/myrealm/users/john&quot;,
   &quot;_updatedAt&quot;: &quot;2021-05-17T14:54:42.939Z&quot;,
-  &quot;_updatedBy&quot;: &quot;http://localhost:8080/v1/realms/myrealm/users/john&quot;
+  &quot;_updatedBy&quot;: &quot;http://localhost:8080/v1/realms/myrealm/users/john&quot;,
   &quot;_expiresInSeconds&quot;: 17530
 }</code></pre></dd>
 </dl>

snapshot/docs/delta/api/assets/archives/fetch.sh

@@ -1,3 +1,3 @@
 curl "http://localhost:8080/v1/archives/myorg/myproject/myarchive" \
-     -H "Accept: application/x-tar" \
-     -o output.tar
+     -H "Accept: application/x-zip" \
+     -o output.zip

snapshot/docs/delta/api/assets/archives/fetched.json

@@ -32,6 +32,6 @@
   "_createdAt": "2021-05-17T14:54:42.939Z",
   "_createdBy": "http://localhost:8080/v1/realms/myrealm/users/john",
   "_updatedAt": "2021-05-17T14:54:42.939Z",
-  "_updatedBy": "http://localhost:8080/v1/realms/myrealm/users/john"
+  "_updatedBy": "http://localhost:8080/v1/realms/myrealm/users/john",
   "_expiresInSeconds": 17530
 }

snapshot/docs/delta/api/assets/graph-analytics/ga-search.json

@@ -39,6 +39,17 @@
               "path": "http://schema.org/worksFor"
             }
           ],
+          "remoteContexts": [
+            {
+              "@type": "ProjectRemoteContextRef",
+              "iri": "https://bbp.epfl.ch/contexts/person",
+              "resource": {
+                "id": "https://bbp.epfl.ch/contexts/person",
+                "project": "myorg/myproj",
+                "rev": 1
+              }
+            }
+          ],
           "_createdAt": "2023-08-08T15:49:14.081Z",
           "_createdBy": {
             "@type": "User",

snapshot/docs/delta/api/assets/id-resolution/multiple-resolution-response.json

@@ -0,0 +1,42 @@
+{
+  "@context" : [
+    "https://bluebrain.github.io/nexus/contexts/metadata.json",
+    "https://bluebrain.github.io/nexus/contexts/search.json"
+  ],
+  "_total" : 2,
+  "_results" : [
+    {
+      "@id" : "https://example.com/Alice",
+      "_constrainedBy" : "https://bluebrain.github.io/nexus/schemas/unconstrained.json",
+      "_createdAt" : "2023-09-22T13:55:33.493Z",
+      "_createdBy" : "http://localhost:8080/v1/realms/myrealm/users/bob",
+      "_deprecated" : false,
+      "_incoming" : "http://localhost:8080/v1/resources/myorg/myproject/_/https:%2F%2Fexample.com%2FAlice/incoming",
+      "_outgoing" : "http://localhost:8080/v1/resources/myorg/myproject/_/https:%2F%2Fexample.com%2FAlice/outgoing",
+      "_project" : "http://localhost:8080/v1/projects/myorg/myproject",
+      "_rev" : 1,
+      "_schemaProject" : "http://localhost:8080/v1/projects/myorg/myproject",
+      "_score" : 0.0,
+      "_self" : "http://localhost:8080/v1/resources/myorg/myproject/_/https:%2F%2Fexample.com%2FAlice",
+      "_updatedAt" : "2023-09-22T13:55:33.493Z",
+      "_updatedBy" : "http://localhost:8080/v1/realms/myrealm/users/bob"
+    },
+    {
+      "@id" : "https://example.com/Alice",
+      "_constrainedBy" : "https://bluebrain.github.io/nexus/schemas/unconstrained.json",
+      "_createdAt" : "2023-09-22T13:55:33.459Z",
+      "_createdBy" : "http://localhost:8080/v1/realms/myrealm/users/bob",
+      "_deprecated" : false,
+      "_incoming" : "http://localhost:8080/v1/resources/myorg/secondproject/_/https:%2F%2Fexample.com%2FAlice/incoming",
+      "_outgoing" : "http://localhost:8080/v1/resources/myorg/secondproject/_/https:%2F%2Fexample.com%2FAlice/outgoing",
+      "_project" : "http://localhost:8080/v1/projects/myorg/secondproject",
+      "_rev" : 1,
+      "_schemaProject" : "http://localhost:8080/v1/projects/myorg/secondproject",
+      "_score" : 0.0,
+      "_self" : "http://localhost:8080/v1/resources/myorg/secondproject/_/https:%2F%2Fexample.com%2FAlice",
+      "_updatedAt" : "2023-09-22T13:55:33.459Z",
+      "_updatedBy" : "http://localhost:8080/v1/realms/myrealm/users/bob"
+    }
+  ],
+  "_maxScore" : 0.0
+}

snapshot/docs/delta/api/assets/id-resolution/request.sh

@@ -0,0 +1 @@
+curl "http://localhost:8080/v1/resolve/https%3A%2F%2Fexample.com%2FAlice"

snapshot/docs/delta/api/assets/id-resolution/single-resolution-response.json

@@ -0,0 +1,9 @@
+{
+  "@context": {
+    "@vocab": "https://schema.org/"
+  },
+  "@id": "https://example.com/Alice",
+  "@type": "Person",
+  "name": "Alice",
+  "age": 42
+}

snapshot/docs/delta/api/assets/permissions/permissions-get.json

@@ -18,7 +18,6 @@
     "acls/read",
     "projects/read",
     "permissions/read",
-    "archives/write",
     "organizations/create",
     "views/query",
     "storages/write",

snapshot/docs/delta/api/assets/remote-contexts.json

@@ -0,0 +1,18 @@
+{
+  "@context": "https://bluebrain.github.io/nexus/contexts/remote-contexts.json",
+  "remoteContexts": [
+    {
+      "@type": "StaticContextRef",
+      "iri": "https://bluebrain.github.io/nexus/contexts/metadata.json"
+    },
+    {
+      "@type": "ProjectContextRef",
+      "iri": "https://localhost/nexus/context",
+      "resource": {
+        "id": "https://localhost/nexus/context",
+        "project": "org/proj",
+        "rev": 5
+      }
+    }
+  ]
+}

snapshot/docs/delta/api/assets/resources/remote-contexts.sh

@@ -0,0 +1 @@
+curl "http://localhost:8080/v1/resources/org/proj/_/my-resource/remote-contexts"

snapshot/docs/delta/api/assets/trial/resources/generate.sh

@@ -0,0 +1,19 @@
+curl -X PUT \
+     -H "Content-Type: application/json" \
+     "http://localhost:8080/trial/resources/myorg/myproj/" \
+     -d \
+'{
+   "schema": "https://bbp.epfl.ch/nexus/schema/morphology"
+   "resource": {
+     "@context": [
+       "https://neuroshapes.org",
+       "https://bluebrain.github.io/nexus/contexts/metadata.json",
+       {
+         "@vocab": "https://bluebrain.github.io/nexus/vocabulary/"
+       }
+     ],
+     "@id": "https://bbp.epfl.ch/nexus/data/morphology-001",
+     "@type": "Morphology",
+     "name": "Morphology 001"
+   }
+ }'

snapshot/docs/delta/api/assets/trial/resources/generated.json

@@ -0,0 +1,26 @@
+{
+  "result": {
+    "@context": [
+      "https://bluebrain.github.io/nexus/contexts/metadata.json",
+      {
+        "@vocab": "https://bluebrain.github.io/nexus/vocabulary/"
+      },
+      "https://neuroshapes.org"
+    ],
+    "@id": "https://bbp.epfl.ch/nexus/data/morphology-001",
+    "@type": "Morphology",
+    "name": "Morphology 001",
+    "_constrainedBy": "https://bbp.epfl.ch/nexus/schema/morphology",
+    "_createdAt": "2023-09-18T12:00:00Z",
+    "_createdBy": "http://localhost/v1/realms/wonderland/users/alice",
+    "_deprecated": false,
+    "_incoming": "http://localhost/v1/resources/myorg/myproj/_/https:%2F%2Fbluebrain.github.io%2Fnexus%2Fvocabulary%2FmyId/incoming",
+    "_outgoing": "http://localhost/v1/resources/myorg/myproj/_/https:%2F%2Fbluebrain.github.io%2Fnexus%2Fvocabulary%2FmyId/outgoing",
+    "_project": "http://localhost/v1/projects/myorg/myproj",
+    "_rev": 1,
+    "_schemaProject": "http://localhost/v1/projects/myorg/myproj",
+    "_self": "http://localhost/v1/resources/myorg/myproj/_/https:%2F%2Fbluebrain.github.io%2Fnexus%2Fvocabulary%2FmyId",
+    "_updatedAt": "2023-09-18T12:00:00Z",
+    "_updatedBy": "http://localhost/v1/realms/wonderland/users/alice"
+  }
+}

snapshot/docs/delta/api/assets/trial/resources/payload.json

@@ -0,0 +1,15 @@
+{
+  "schema": "https://bbp.epfl.ch/nexus/schema/morphology"
+  "resource": {
+    "@context": [
+      "https://neuroshapes.org",
+      "https://bluebrain.github.io/nexus/contexts/metadata.json",
+      {
+        "@vocab": "https://bluebrain.github.io/nexus/vocabulary/"
+      }
+    ],
+    "@id": "https://bbp.epfl.ch/nexus/data/morphology-001",
+    "@type": "Morphology",
+    "name": "Morphology 001"
+  }
+}

snapshot/docs/delta/api/assets/version.json

@@ -4,8 +4,8 @@
   "dependencies": {
     "blazegraph": "2.1.6-RC",
     "postgresql": "15.4",
-    "elasticsearch": "8.8.1",
-    "remoteStorage": "1.8.0"
+    "elasticsearch": "8.10.1",
+    "remoteStorage": "1.9.0"
   },
   "plugins": {
     "archive": "1.9.0",