diff --git a/prime-router/settings/STLTs/NJ/nj-doh.yml b/prime-router/settings/STLTs/NJ/nj-doh.yml new file mode 100644 index 00000000000..bbd289a2f63 --- /dev/null +++ b/prime-router/settings/STLTs/NJ/nj-doh.yml @@ -0,0 +1,110 @@ +- name: "nj-doh" + description: "New Jersey Department of Health" + jurisdiction: "STATE" + stateCode: "NJ" + countyName: null + filters: null + featureFlags: null + keys: null + senders: [] + receivers: + - name: "full-elr" + organizationName: "nj-doh" + topic: "full-elr" + customerStatus: "active" + translation: ! + schemaName: "azure:/hl7_mapping/receivers/STLTs/NJ/NJ-receiver-transform.yml" + useTestProcessingMode: false + useBatchHeaders: true + receivingApplicationName: "ELRS" + receivingApplicationOID: "2.16.840.1.113883.3.1299.5.1.6.1" + receivingFacilityName: "NJDOH" + receivingFacilityOID: "2.16.840.1.113883.3.1299" + messageProfileId: null + replaceValue: { } + replaceValueAwithB: { } + reportingFacilityName: null + reportingFacilityId: null + reportingFacilityIdType: null + suppressQstForAoe: false + suppressHl7Fields: null + suppressAoe: false + defaultAoeToUnknown: false + replaceUnicodeWithAscii: false + useBlankInsteadOfUnknown: null + truncateHDNamespaceIds: true + truncateHl7Fields: "OBX-23-1,ORC-12-3,OBR-16-3,OBX-17-1,ORC-12-1,OBR-16-1" + usePid14ForPatientEmail: false + convertTimestampToDateTime: null + cliaForOutOfStateTesting: null + cliaForSender: { } + phoneNumberFormatting: "STANDARD" + suppressNonNPI: false + processingModeCode: null + replaceDiiWithOid: null + applyOTCDefault: false + useOrderingFacilityName: "STANDARD" + valueSetOverrides: { } + nameFormat: "STANDARD" + receivingOrganization: null + convertPositiveDateTimeOffsetToNegative: false + stripInvalidCharsRegex: null + convertDateTimesToReceiverLocalTime: false + useHighPrecisionHeaderDateTimeFormat: false + type: "HL7" + truncationConfig: + truncateHDNamespaceIds: true + truncateHl7Fields: + - "OBX-23-1" + - "ORC-12-3" + - "OBR-16-3" + - "OBX-17-1" + - "ORC-12-1" + - "OBR-16-1" + customLengthHl7Fields: { } + jurisdictionalFilter: + - "(Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state.exists() and Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state = 'NJ') or (Bundle.entry.resource.ofType(Patient).address.state.exists() and Bundle.entry.resource.ofType(Patient).address.state = 'NJ')" + qualityFilter: + # hasOneOf(patient_street, patient_zip_code, patient_phone_number, patient_email) + - "Bundle.entry.resource.ofType(Patient).where(address.line[0].empty() and address.postalCode.empty() and telecom.where(system = 'phone').value.empty() and telecom.where(system = 'email').value.empty()).count() = 0" + # hasOneOf(order_test_date, specimen_collection_date_time, test_result_date) + - "Bundle.entry.resource.ofType(DiagnosticReport).where(basedOn.resolve().extension('https://reportstream.cdc.gov/fhir/StructureDefinition/effective-date').empty() and specimen.resolve().collection.collected.empty() and effective.empty() and issued.empty() and result.resolve().effective.empty()).count() = 0" + # isValidClia(testing_lab_clia) + - "Bundle.entry.resource.ofType(ServiceRequest).performer.resolve().identifier.where(type.coding.code = 'CLIA').value.getIdType() = 'CLIA'" + # hasValidData(patient_last_name, patient_first_name, patient_dob) + - "Bundle.entry.resource.ofType(Patient).where(name.family.empty() or name.given.empty() or birthDate.empty()).count() = 0" + # hasValidData(specimen_type) + - "Bundle.entry.resource.ofType(Specimen).where(type.empty()).count() = 0" + # hasValidData(message_id) + - "Bundle.identifier.value.empty().not()" + # hasValidData(equipment_model_name, test_result) + - "Bundle.entry.resource.ofType(DiagnosticReport).result.resolve().where(method.empty() or value.coding.code.empty()).count() = 0" + routingFilter: [ ] + processingModeFilter: + # matches(processing_mode_code, P) + - "Bundle.entry.resource.ofType(MessageHeader).meta.tag.where(system = 'http://terminology.hl7.org/CodeSystem/v2-0103').code = 'P'" + reverseTheQualityFilter: false + deidentify: false + deidentifiedValue: "" + timing: + operation: "MERGE" + numberPerDay: 1440 + initialTime: "09:40" + timeZone: "EASTERN" + maxReportCount: 100 + whenEmpty: + action: "NONE" + onlyOncePerDay: false + description: "" + transport: ! + type: SFTP + host: sftp + port: 22 + filePath: ./upload + credentialName: DEFAULT-SFTP + conditionFilter: [ ] + mappedConditionFilter: [ ] + externalName: null + enrichmentSchemaNames: ["classpath:/metadata/fhir_transforms/common/suppress-device-information.yml" ] + timeZone: null + dateTimeFormat: "OFFSET" diff --git a/prime-router/src/main/resources/metadata/fhir_transforms/common/suppress-device-information.yml b/prime-router/src/main/resources/metadata/fhir_transforms/common/suppress-device-information.yml new file mode 100644 index 00000000000..f3d3ffdb557 --- /dev/null +++ b/prime-router/src/main/resources/metadata/fhir_transforms/common/suppress-device-information.yml @@ -0,0 +1,27 @@ +## Suppresses Device information OBX-18-1,OBX-18-2,OBX-18-3 +elements: + ##OBX-18-1 + - name: suppress-device-name + resource: 'Bundle.entry.resource.ofType(Device).identifier' + value: [ '""' ] + bundleProperty: '%resource.value' + + ##OBX-18-2 + - name: suppess-device-namespace_id + resource: 'Bundle.entry.resource.ofType(Device).identifier' + condition: '%resource.extension("https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority").extension("https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id").exists()' + bundleProperty: '%resource.extension("https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority").extension("https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id").value[x]' + value: [ '""' ] + + ##OBX-18-3 + - name: suppress-device-universal-id + resource: 'Bundle.entry.resource.ofType(Device).identifier' + condition: '%resource.extension("https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority").extension("https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id").exists()' + bundleProperty: '%resource.extension("https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority").extension("https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id").value[x]' + value: [ '""' ] + + ##OBX-18-3 different mappings + - name: suppress-device-type-id + resource: 'Bundle.entry.resource.ofType(Device).identifier' + bundleProperty: '%resource.type.coding.code' + value: [ '""' ] \ No newline at end of file diff --git a/prime-router/src/main/resources/metadata/hl7_mapping/receivers/STLTs/NJ/NJ-receiver-transform.yml b/prime-router/src/main/resources/metadata/hl7_mapping/receivers/STLTs/NJ/NJ-receiver-transform.yml new file mode 100644 index 00000000000..197d135adfb --- /dev/null +++ b/prime-router/src/main/resources/metadata/hl7_mapping/receivers/STLTs/NJ/NJ-receiver-transform.yml @@ -0,0 +1,59 @@ +hl7Class: ca.uhn.hl7v2.model.v251.message.ORU_R01 + +extends: classpath:/metadata/hl7_mapping/ORU_R01/ORU_R01-base.yml +elements: + # MSH 3-1 + - name: nj-sending-application-namespace-id + value: [ '"CDC PRIME - Atlanta, Georgia (Dekalb)"' ] + hl7Spec: [ MSH-3-1 ] + + # MSH 3-2 + - name: nj-sending-application-universal-id + value: [ '"2.16.840.1.114222.4.1.237821"' ] + hl7Spec: [ MSH-3-2 ] + + # MSH 3-3 + - name: nj-sending-application-universal-id-type + value: [ '"ISO"' ] + hl7Spec: [ MSH-3-3 ] + + # MSH 4-1 + - name: nj-reporting-facility-name + value: [ '"CDC PRIME"' ] + hl7Spec: [ MSH-4-1 ] + + # MSH 4-2 + - name: nj-reporting-facility-id + value: [ '"11D2030855"' ] + hl7Spec: [ MSH-4-2 ] + + # MSH 4-3 + - name: nj-reporting-facility-id-type + value: [ '"CLIA"' ] + hl7Spec: [ MSH-4-3 ] + + # MSH 5 + - name: nj-receiving-application-namespace-id + value: [ '"ELRS"' ] + hl7Spec: [ MSH-5-1 ] + + - name: nj-receiving-application-universal-id + value: [ '"2.16.840.1.113883.3.1299.5.1.6.1"' ] + hl7Spec: [ MSH-5-2 ] + + - name: nj-receiving-application-universal-id-type + value: [ '"ISO"' ] + hl7Spec: [ MSH-5-3 ] + + # MSH 6 + - name: nj-receiving-facility-namespace-id + value: [ '"NJDOH"' ] + hl7Spec: [ MSH-6-1 ] + + - name: nj-receiving-facility-universal-id + value: [ '"2.16.840.1.113883.3.1299"' ] + hl7Spec: [ MSH-6-2 ] + + - name: nj-receiving-facility-universal-id-type + value: [ '"ISO"' ] + hl7Spec: [ MSH-6-3 ] \ No newline at end of file diff --git a/prime-router/src/testIntegration/resources/datatests/FHIR_to_HL7/sample_NJ_20240719-0001.fhir b/prime-router/src/testIntegration/resources/datatests/FHIR_to_HL7/sample_NJ_20240719-0001.fhir new file mode 100644 index 00000000000..e78bc968699 --- /dev/null +++ b/prime-router/src/testIntegration/resources/datatests/FHIR_to_HL7/sample_NJ_20240719-0001.fhir @@ -0,0 +1 @@ +{ "resourceType": "Bundle", "identifier": { "value": "3ad338c6-125d-4141-9ce1-6040481304ab" }, "type": "message", "timestamp": "2024-02-14T21:06:46.577Z", "entry": [ { "fullUrl": "MessageHeader/2a8ffce6-daa1-43e2-9236-e38bbb59892a", "resource": { "resourceType": "MessageHeader", "id": "2a8ffce6-daa1-43e2-9236-e38bbb59892a", "meta": { "tag": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0103", "code": "P", "display": "Production" } ] }, "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/msh-message-header", "extension": [ { "url": "MSH.15", "valueString": "NE" }, { "url": "MSH.16", "valueString": "NE" }, { "url": "MSH.19", "valueCodeableConcept": { "coding": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding", "valueString": "coding" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding-system", "valueString": "ISO" } ], "code": "ENG", "display": "English" } ] } }, { "url": "MSH.21", "valueIdentifier": { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority", "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id", "valueString": "ELR_Receiver" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id", "valueString": "2.16.840.1.113883.9.11" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id-type", "valueString": "ISO" } ] } ], "value": "PHLabReport-NoAck" } }, { "url": "MSH.7", "valueInstant": "2024-02-14T21:06:46.577Z" } ] }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/character-set", "valueString": "UNICODE UTF-8" } ], "eventCoding": { "system": "http://terminology.hl7.org/CodeSystem/v2-0003", "code": "R01", "display": "ORU^R01^ORU_R01" }, "destination": [ { "name": "PRIME ReportStream", "endpoint": "https://prime.cdc.gov/api/reports?option=SkipInvalidItems" } ], "sender": { "reference": "Organization/719ec8ad-cf59-405a-9832-c4065945c130" }, "source": { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/software-binary-id", "valueString": "0.2-SNAPSHOT" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/software-install-date", "valueInstant": "2024-02-14T16:38:56Z" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/software-vendor-org", "valueReference": { "reference": "Organization/07640c5d-87cd-488b-9343-a226c5166539" } }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id", "valueString": "CDC PRIME - Atlanta" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id", "valueString": "2.16.840.1.114222.4.1.237821" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id-type", "valueString": "ISO" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "MSH.3" } ], "name": "CDC PRIME - Atlanta: 2.16.840.1.114222.4.1.237821", "software": "PRIME ReportStream", "version": "0.2-SNAPSHOT", "endpoint": "urn:oid:2.16.840.1.114222.4.1.237821" }, "focus": [ { "reference": "Provenance/b344d9a8-399a-4607-b10e-9bf86f27a1bf" }, { "reference": "DiagnosticReport/3ad338c6-125d-4141-9ce1-6040481304ab" } ] } }, { "fullUrl": "Provenance/b344d9a8-399a-4607-b10e-9bf86f27a1bf", "resource": { "resourceType": "Provenance", "id": "b344d9a8-399a-4607-b10e-9bf86f27a1bf", "recorded": "2024-02-14T21:06:46.577Z", "activity": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0003", "code": "R01", "display": "ORU/ACK - Unsolicited transmission of an observation message" } ] }, "agent": [ { "who": { "reference": "Organization/719ec8ad-cf59-405a-9832-c4065945c130" } } ] } }, { "fullUrl": "DiagnosticReport/3ad338c6-125d-4141-9ce1-6040481304ab", "resource": { "resourceType": "DiagnosticReport", "id": "3ad338c6-125d-4141-9ce1-6040481304ab", "identifier": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority", "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id", "valueString": "Testing Lab" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id", "valueString": "12D4567890" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id-type", "valueCode": "CLIA" } ] }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "ORC.3" } ], "type": { "coding": [ { "code": "FILL" } ] }, "value": "3ad338c6-125d-4141-9ce1-6040481304ab" }, { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": 123 }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority", "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id", "valueString": "Testing Lab" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id", "valueString": "12D4567890" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id-type", "valueCode": "CLIA" } ] } ], "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "PLAC" } ] }, "value": "3ad338c6-125d-4141-9ce1-6040481304ab" } ], "basedOn": [ { "reference": "ServiceRequest/c62aa5a7-4624-4b00-9ad6-e089c1aa29c5" } ], "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "95941-1" } ] }, "subject": { "reference": "Patient/3551359f-bd1c-411e-b930-789ac694e75f" }, "effectiveDateTime": "2024-02-14T20:51:46+00:00", "_effectiveDateTime": { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2-date-time", "valueDateTime": "2024-02-14T20:51:46+00:00" } ] }, "issued": "2024-02-14T21:06:46+00:00", "_issued": { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2-date-time", "valueInstant": "2024-02-14T21:06:46+00:00" } ] }, "specimen": [ { "reference": "Specimen/dc7af370-fc07-4b00-abc7-9b5dd87cf4d2" } ], "result": [ { "reference": "Observation/a8d3dfac-dd32-4e10-877b-407da556266e" }, { "reference": "Observation/06735b3b-a15d-4249-9ff6-6df8f7aab822" }, { "reference": "Observation/a6655d89-f7ea-4192-be69-92e772c4b8a6" } ] } }, { "fullUrl": "Patient/3551359f-bd1c-411e-b930-789ac694e75f", "resource": { "resourceType": "Patient", "id": "3551359f-bd1c-411e-b930-789ac694e75f", "extension": [ { "url": "http://ibm.com/fhir/cdm/StructureDefinition/local-race-cd", "valueCodeableConcept": { "coding": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding", "valueString": "coding" } ], "system": "http://terminology.hl7.org/CodeSystem/v3-Race", "version": "2.5.1", "code": "2076-8", "display": "pacific" } ], "text": "pacific" } }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/ethnic-group", "valueCodeableConcept": { "coding": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding", "valueString": "coding" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding-system", "valueString": "HL70189" } ], "system": "http://terminology.hl7.org/CodeSystem/v2-0189", "version": "2.9", "code": "N", "display": "Not Hispanic or Latino" } ], "text": "Not Hispanic or Latino" } }, { "url": "https://hl7.org/fhir/R4/extension-patient-genderidentity.html", "valueCoding": { "system": "https://hl7.org/fhir/R4/valueset-gender-identity.html", "code": "male", "display": "male" } } ], "identifier": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "PID.3" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cx-identifier", "extension": [ { "url": "CX.5", "valueString": "PI" } ] }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-facility", "valueReference": { "reference": "Organization/719ec8ad-cf59-405a-9832-c4065945c130" } } ], "value": "3551359f-bd1c-411e-b930-789ac694e75f", "assigner": { "reference": "Organization/719ec8ad-cf59-405a-9832-c4065945c130" } } ], "name": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/xpn-human-name", "extension": [ { "url": "XPN.2", "valueString": "Cedrick" }, { "url": "XPN.3", "valueString": "Charles" } ] } ], "use": "official", "family": "Diggory", "given": [ "Cedrick", "Charles" ] } ], "telecom": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/xtn-contact-point", "extension": [ { "url": "XTN.1", "valueString": "(340) 555 5555" }, { "url": "XTN.2", "valueString": "PRS" }, { "url": "XTN.3", "valueString": "CP" }, { "url": "XTN.7", "valueInteger": 5555555 }, { "url": "XTN.12", "valueString": "(340) 555 5555" } ] }, { "url": "http://hl7.org/fhir/StructureDefinition/contactpoint-country", "valueInteger": 1 }, { "url": "http://hl7.org/fhir/StructureDefinition/contactpoint-area", "valueInteger": 340 } ], "system": "phone", "value": "(340) 555 5555", "use": "mobile" } ], "gender": "male", "birthDate": "2000-12-18", "deceasedBoolean": false, "address": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/xad-address", "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/sad-address-line", "extension": [ { "url": "SAD.1", "valueString": "123 Main St" } ] } ] } ], "line": [ "123 Main St" ], "city": "Anchorage", "district": "Anchorage", "state": "NJ", "postalCode": "99501", "country": "USA" } ], "managingOrganization": { "reference": "Organization/719ec8ad-cf59-405a-9832-c4065945c130" } } }, { "fullUrl": "Organization/719ec8ad-cf59-405a-9832-c4065945c130", "resource": { "resourceType": "Organization", "id": "719ec8ad-cf59-405a-9832-c4065945c130", "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/organization-name-type", "valueCoding": { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding", "valueCodeableConcept": { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "XON.2" } ], "coding": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding", "valueString": "coding" } ], "code": "L" } ] } } ], "code": "L" } }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "OBX.25" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "OBX.15" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-organization", "valueCodeableConcept": { "coding": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding-system", "valueCode": "CLIA" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding", "valueString": "coding" } ], "code": "12D4567890", "display": "Testing Lab" } ] } }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/xon-organization", "extension": [ { "url": "XON.10", "valueString": "12D4567890" } ] } ], "identifier": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "HD.2,HD.3" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/assigning-authority", "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id", "valueString": "2.16.840.1.113883.4.7" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/universal-id-type", "valueString": "ISO" }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id", "valueString": "CLIA" } ] }, { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/coding-system", "valueCodeableConcept": { "coding": [ { "code": "CLIA" } ] } } ], "use": "official", "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0301", "code": "CLIA" } ] }, "value": "12D4567890" }, { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field", "valueString": "HD.1" } ], "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "XX" } ] }, "value": "Testing Lab" } ], "name": "Testing Lab", "telecom": [ { "extension": [ { "url": "https://reportstream.cdc.gov/fhir/StructureDefinition/xtn-contact-point", "extension": [ { "url": "XTN.1", "valueString": "(530) 867 5309" }, { "url": "XTN.2", "valueString": "WPN" }, { "url": "XTN.3", "valueString": "PH" }, { "url": "XTN.7", "valueInteger": 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Way^^Houston^NJ^77001^USA|||||QST +OBX|5|DT|11368-8^Illness or injury onset date and time^LN^^^^^^Illness or injury onset date and time||20240213000000+0000|||^^^^^^2.7|||F|||20240214205146+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^NJ^77001^USA|||||QST +OBX|6|CWE|82810-3^Pregnancy status^LN^^^^2.68^^Pregnancy status||60001007^Not pregnant^SCT|||^^^^^^2.7|||F|||20240214205146+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^NJ^77001^USA|||||QST +OBX|7|CWE|95418-0^Employed in a healthcare setting^LN^^^^2.69^^Employed in a healthcare setting||N^No^HL70136|||^^^^^^2.7|||F|||20240214205146+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^NJ^77001^USA|||||QST +OBX|8|CWE|95421-4^Resides in a congregate care setting^LN^^^^2.69^^Resides in a congregate care setting||N^No^HL70136|||^^^^^^2.7|||F|||20240214205146+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^NJ^77001^USA|||||QST +SPM|1|3ad338c6-125d-4141-9ce1-6040481304ab&Testing Lab&12D4567890&CLIA^3ad338c6-125d-4141-9ce1-6040481304ab&Testing Lab&12D4567890&CLIA||258500001^Nasopharyngeal swab^SCT^^^^2.67^^Nasopharyngeal swab||||87100004^Topography unknown (body structure)^SCT^^^^^^Topography unknown (body structure)|||||||||20240214205146+0000|20240214205146+0000 diff --git a/prime-router/src/testIntegration/resources/datatests/translation-test-config.csv b/prime-router/src/testIntegration/resources/datatests/translation-test-config.csv index 98ca0f96664..ec397b83582 100644 --- a/prime-router/src/testIntegration/resources/datatests/translation-test-config.csv +++ b/prime-router/src/testIntegration/resources/datatests/translation-test-config.csv @@ -61,6 +61,7 @@ FHIR_to_HL7/sample_NH_20240716-0001.fhir,,FHIR_to_HL7/sample_NH_202407016-0001.h FHIR_to_HL7/sample_IL_20240802-0001.fhir,,FHIR_to_HL7/sample_IL_20240802-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/IL/IL-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","","" FHIR_to_HL7/sample_WA_20240719-0001.fhir,,FHIR_to_HL7/sample_WA_20240719-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/WA/WA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","wa-phd.full-elr","","" FHIR_to_HL7/sample_OH_20240718-0001.fhir,,FHIR_to_HL7/sample_OH_20240718-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/OH/OH-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","","" +FHIR_to_HL7/sample_NJ_20240719-0001.fhir,,FHIR_to_HL7/sample_NJ_20240719-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/NJ/NJ-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","nj-doh.full-elr","","classpath:/metadata/fhir_transforms/common/suppress-device-information.yml" FHIR_to_HL7/sample_ND_20240819-0001.fhir,,FHIR_to_HL7/sample_ND_20240819-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/ND/ND-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","","" FHIR_to_HL7/sample_LA_20240806-0001.fhir,,FHIR_to_HL7/sample_LA_20240806-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/LA/LA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","","classpath:/metadata/fhir_transforms/receivers/reference-range-enrichment.yml" FHIR_to_HL7/sample_MN_20240816-0001.fhir,,FHIR_to_HL7/sample_MN_20240816-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/MN/MN-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","","" diff --git a/prime-router/src/testIntegration/resources/settings/organizations.yml b/prime-router/src/testIntegration/resources/settings/organizations.yml index e24a013057e..e2ab115bb0c 100644 --- a/prime-router/src/testIntegration/resources/settings/organizations.yml +++ b/prime-router/src/testIntegration/resources/settings/organizations.yml @@ -667,6 +667,116 @@ enrichmentSchemaNames: [] timeZone: "PACIFIC" dateTimeFormat: "LOCAL" +- name: "nj-doh" + description: "New Jersey Department of Health" + jurisdiction: "STATE" + stateCode: "NJ" + countyName: null + filters: null + featureFlags: null + keys: null + senders: [] + receivers: + - name: "full-elr" + organizationName: "nj-doh" + topic: "full-elr" + customerStatus: "active" + translation: ! + schemaName: "classpath:/metadata/hl7_mapping/receivers/STLTs/NJ/NJ-receiver-transform.yml" + useTestProcessingMode: false + useBatchHeaders: true + receivingApplicationName: null + receivingApplicationOID: null + receivingFacilityName: null + receivingFacilityOID: null + messageProfileId: null + replaceValue: { } + replaceValueAwithB: { } + reportingFacilityName: null + reportingFacilityId: null + reportingFacilityIdType: null + suppressQstForAoe: false + suppressHl7Fields: null + suppressAoe: false + defaultAoeToUnknown: false + replaceUnicodeWithAscii: false + useBlankInsteadOfUnknown: null + truncateHDNamespaceIds: true + truncateHl7Fields: "OBX-23-1,ORC-12-3,OBR-16-3,OBX-17-1,ORC-12-1,OBR-16-1" + usePid14ForPatientEmail: false + convertTimestampToDateTime: null + cliaForOutOfStateTesting: null + cliaForSender: { } + phoneNumberFormatting: "STANDARD" + suppressNonNPI: false + processingModeCode: null + replaceDiiWithOid: null + applyOTCDefault: false + useOrderingFacilityName: "STANDARD" + valueSetOverrides: { } + nameFormat: "STANDARD" + receivingOrganization: null + convertPositiveDateTimeOffsetToNegative: false + stripInvalidCharsRegex: null + convertDateTimesToReceiverLocalTime: false + useHighPrecisionHeaderDateTimeFormat: false + type: "HL7" + truncationConfig: + truncateHDNamespaceIds: true + truncateHl7Fields: + - "OBX-23-1" + - "ORC-12-3" + - "OBR-16-3" + - "OBX-17-1" + - "ORC-12-1" + - "OBR-16-1" + customLengthHl7Fields: { } + jurisdictionalFilter: + - "(Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state.exists() and Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state = 'NJ') or (Bundle.entry.resource.ofType(Patient).address.state.exists() and Bundle.entry.resource.ofType(Patient).address.state = 'NJ')" + qualityFilter: + # hasOneOf(patient_street, patient_zip_code, patient_phone_number, patient_email) + - "Bundle.entry.resource.ofType(Patient).where(address.line[0].empty() and address.postalCode.empty() and telecom.where(system = 'phone').value.empty() and telecom.where(system = 'email').value.empty()).count() = 0" + # hasOneOf(order_test_date, specimen_collection_date_time, test_result_date) + - "Bundle.entry.resource.ofType(DiagnosticReport).where(basedOn.resolve().extension('https://reportstream.cdc.gov/fhir/StructureDefinition/effective-date').empty() and specimen.resolve().collection.collected.empty() and effective.empty() and issued.empty() and result.resolve().effective.empty()).count() = 0" + # isValidClia(testing_lab_clia) + - "Bundle.entry.resource.ofType(ServiceRequest).performer.resolve().identifier.where(type.coding.code = 'CLIA').value.getIdType() = 'CLIA'" + # hasValidData(patient_last_name, patient_first_name, patient_dob) + - "Bundle.entry.resource.ofType(Patient).where(name.family.empty() or name.given.empty() or birthDate.empty()).count() = 0" + # hasValidData(specimen_type) + - "Bundle.entry.resource.ofType(Specimen).where(type.empty()).count() = 0" + # hasValidData(message_id) + - "Bundle.identifier.value.empty().not()" + # hasValidData(equipment_model_name, test_result) + - "Bundle.entry.resource.ofType(DiagnosticReport).result.resolve().where(method.empty() or value.coding.code.empty()).count() = 0" + routingFilter: [ ] + processingModeFilter: + # matches(processing_mode_code, P) + - "Bundle.entry.resource.ofType(MessageHeader).meta.tag.where(system = 'http://terminology.hl7.org/CodeSystem/v2-0103').code = 'P'" + reverseTheQualityFilter: false + deidentify: false + deidentifiedValue: "" + timing: + operation: "MERGE" + numberPerDay: 1440 + initialTime: "09:40" + timeZone: "EASTERN" + maxReportCount: 100 + whenEmpty: + action: "NONE" + onlyOncePerDay: false + description: "" + transport: ! + type: SFTP + host: sftp + port: 22 + filePath: ./upload + credentialName: DEFAULT-SFTP + conditionFilter: [ ] + mappedConditionFilter: [ ] + externalName: null + enrichmentSchemaNames: ["classpath:/metadata/fhir_transforms/common/suppress-device-information.yml" ] + timeZone: null + dateTimeFormat: "OFFSET" - name: "mo-phd" description: "Missouri Public Health Department" jurisdiction: "STATE"