[Internal] [Test] Test Out Raw Reads (FASTQ) and .GZ Files

[ankushkgupta2]

Please Provide a Description of the Testing Request.
Need to test out user pointing to a single .GZ fasta file:

• unzips it
• assigns the paths in the metadata file to sample with matching name, if cannot be found, throws an error

Need to test out .FASTQ formatted file

Place an ❌ in a Box that Best Matches the Test Request's Importance:

• [] 1 - Urgent (absolutely integral and core-functionlaity of the codebase is completely compromised without this test)
• 2 - Most Important (codebase can be used for some core-functions but the test needs to be executed for some)
• [] 3-4 - Moderate (codebase can be used for all core-functions but the test needs to be exexcuted for some other ones)
• [] 5 - Least important (would like to see but there are no stringent expectations nor urgency for current/future use-cases) 

Any Additional Context or Information? Has There Been Any Progress Made So Far Towards this Request? Any Helpful Resources to Reference? Screenshots or Links?
N/A

[jessicarowell]

Closed because pipeline has been significantly refactored since this time