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[External] [Bug] test fails at validation step #201

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ammaraziz opened this issue Aug 1, 2024 · 0 comments
Open
1 task done

[External] [Bug] test fails at validation step #201

ammaraziz opened this issue Aug 1, 2024 · 0 comments
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bug Something isn't working

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@ammaraziz
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ammaraziz commented Aug 1, 2024

What is the Bug Related To? Please Provide a Description. 

Place an ❌ in a Box that Best Matches the Bug's Importance:

  • [] 1 - Most severe (a full-break in core function)
  • [] 2-4 - Moderate (break for a particular aspect/feature) (how integral is the broken feature?)
  • 5 - Least severe (non-functional issue, such as inconsitency / error in documentation or administrative in nature) 

Please Complete the Following Information:

  • OS: Linux 5.15.0-112-generic 122-Ubuntu SMP x86_64 GNU/Linux
  • Browser: NA
  • Version: Nextflow 24.04.3 build 5916, installed with mamba as per readme instructions (not wiki)
  • Run environment: Run on local system with docker access/permissions and also with conda

Please Outline Necessary Steps to Replicate Bug (Go to.. Click on... Install the following... etc.):

command run:

nextflow run main.nf -profile test,docker --virus
nextflow run main.nf -profile test,conda --virus

No modifications were done to any config files.

**Any Additional Context or Information?
See log:
nextflow.log.txt

What I think is the main error:

Caused by:
  Value must be of string type: /home/amar/repos/tostadas/assets/sample_fastas/mpox/ used for fasta_path parameter -- Check script './workflows/../subworkflows/local/../../modules/local/general_util/validate_params/main.nf' at line: 149
@ammaraziz ammaraziz added the bug Something isn't working label Aug 1, 2024
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