Install on Springdale Linux not working #1422

rmchurch · 2023-10-19T23:14:07Z

rmchurch
Oct 19, 2023

I have tried a few ways to install cadquery on my machine. For example, with straight conda:

conda create -n env_cad
conda activate env_cad
conda install -c conda-forge -c cadquery python=3.9 cadquery=master

It installs, but doing import cadquery gives an error related to the OCP.gp import (see below). I've tried a couple different ways, including the mamba route, but all give errors at the import cadquery call (or just fail to install). My Linux distro is:

lsb_release -a
LSB Version:	:core-4.1-amd64:core-4.1-noarch
Distributor ID:	Springdale
Description:	Springdale Linux release 8.8 (Modena)
Release:	8.8
Codename:	Modena

I was looking for a way to install from source, with the module system on this Linux cluster, but it seems everything goes through conda, mamba, or pip. Are there any ways to install from source? Or specific issues I can debug on?

In [1]: import cadquery
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
Cell In[1], line 1
----> 1 import cadquery

File ~/.conda/envs/env_cad/lib/python3.9/site-packages/cadquery/__init__.py:10
      7     __version__ = "2.4-dev"
      9 # these items point to the OCC implementation
---> 10 from .occ_impl.geom import Plane, BoundBox, Vector, Matrix, Location
     11 from .occ_impl.shapes import (
     12     Shape,
     13     Vertex,
   (...)
     20     sortWiresByBuildOrder,
     21 )
     22 from .occ_impl import exporters

File ~/.conda/envs/env_cad/lib/python3.9/site-packages/cadquery/occ_impl/geom.py:5
      1 import math
      3 from typing import overload, Sequence, Union, Tuple, Type, Optional
----> 5 from OCP.gp import (
      6     gp_Vec,
      7     gp_Ax1,
      8     gp_Ax3,
      9     gp_Pnt,
     10     gp_Dir,
     11     gp_Pln,
     12     gp_Trsf,
     13     gp_GTrsf,
     14     gp_XYZ,
     15     gp_EulerSequence,
     16     gp,
     17 )
     18 from OCP.Bnd import Bnd_Box
     19 from OCP.BRepBndLib import BRepBndLib

ImportError: libTKIVtk.so.7.7: cannot open shared object file: No such file or directory

when installing with mamba, it also installs, but the error relates to GLIBC

ImportError: /lib64/libm.so.6: version `GLIBC_2.29' not found (required by /home/me/.conda/envs/paramak_env/lib/python3.8/site-packages/OCP.cpython-38-x86_64-linux-gnu.so)

Answered by lorenzncode

Oct 21, 2023

For master, my env has ocp=7.7.1.0.

$ conda list "ocp|occt|cadquery"
# packages in environment at /home/lorenzn/tools/mambaforge_230901/envs/cqdev:
#
# Name                    Version                   Build  Channel
cadquery                  2.4.0.dev0                dev_0    <develop>
occt                      7.7.1           all_h16763a6_201    conda-forge
ocp                       7.7.1.0         py311h54fcf19_1    conda-forge
ocp-stubs                 7.7.0                     dev_0    <develop>

Using mambaforge:
mamba install -c cadquery cadquery=master ocp=7.7.1.0

or for the released version 2.3.1:
mamba install cadquery

View full answer

adam-urbanczyk · 2023-10-20T06:17:23Z

adam-urbanczyk
Oct 20, 2023
Maintainer

I think there could be multiple issues here. Could you paste the results of conda list and conda info for all of your attempts (or one that has your preference)?

7 replies

rmchurch Oct 20, 2023
Author

For the pure conda attempt (preferred since this cluster has a module system with pre-installed anaconda modules):

conda info

     active environment : env_cad
    active env location : /home/rmc2/.conda/envs/env_cad
            shell level : 3
       user config file : /home/rmc2/.condarc
 populated config files : 
          conda version : 23.1.0
    conda-build version : 3.23.3
         python version : 3.10.9.final.0
       virtual packages : __archspec=1=x86_64
                          __glibc=2.28=0
                          __linux=4.18.0=0
                          __unix=0=0
       base environment : /usr/licensed/anaconda3/2023.3  (read only)
      conda av data dir : /usr/licensed/anaconda3/2023.3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /usr/licensed/anaconda3/2023.3/pkgs
                          /home/rmc2/.conda/pkgs
       envs directories : /home/rmc2/.conda/envs
                          /usr/licensed/anaconda3/2023.3/envs
               platform : linux-64
             user-agent : conda/23.1.0 requests/2.28.1 CPython/3.10.9 Linux/4.18.0-477.27.1.el8_8.x86_64 rhel/8.8 glibc/2.28
                UID:GID : 106375:1000
             netrc file : None
           offline mode : False

conda list
\# packages in environment at /home/rmc2/.conda/envs/env_cad:
\#
\# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
ampl-mp                   3.1.0             h2cc385e_1006    conda-forge
asttokens                 2.4.0              pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
brotli                    1.1.0                hd590300_1    conda-forge
brotli-bin                1.1.0                hd590300_1    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cadquery                  master          2.3.1_54_gf467ac9    cadquery
casadi                    3.6.3            py39h4b51453_1    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
eigen                     3.4.0                h00ab1b0_0    conda-forge
exceptiongroup            1.1.3              pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
ezdxf                     1.1.0            py39hda80f44_1    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.43.1           py39hd1e30aa_0    conda-forge
freeimage                 3.18.0              h7ff9cae_18    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
imath                     3.1.9                hfc55251_0    conda-forge
ipopt                     3.14.12              hf9e1ecf_0    conda-forge
ipython                   8.16.1             pyh0d859eb_0    conda-forge
jedi                      0.19.1             pyhd8ed1ab_0    conda-forge
jxrlib                    1.1                  h7f98852_2    conda-forge
lcms2                     2.15                 hb7c19ff_3    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libblas                   3.9.0           19_linux64_openblas    conda-forge
libbrotlicommon           1.1.0                hd590300_1    conda-forge
libbrotlidec              1.1.0                hd590300_1    conda-forge
libbrotlienc              1.1.0                hd590300_1    conda-forge
libcblas                  3.9.0           19_linux64_openblas    conda-forge
libdeflate                1.19                 hd590300_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 13.2.0               h807b86a_2    conda-forge
libgfortran-ng            13.2.0               h69a702a_2    conda-forge
libgfortran5              13.2.0               ha4646dd_2    conda-forge
libgomp                   13.2.0               h807b86a_2    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libjpeg-turbo             3.0.0                hd590300_1    conda-forge
liblapack                 3.9.0           19_linux64_openblas    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libopenblas               0.3.24          pthreads_h413a1c8_0    conda-forge
libosqp                   0.6.3                h59595ed_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libqdldl                  0.1.5                h27087fc_1    conda-forge
libraw                    0.21.1               h2a13503_2    conda-forge
libsqlite                 3.43.2               h2797004_0    conda-forge
libstdcxx-ng              13.2.0               h7e041cc_2    conda-forge
libtiff                   4.6.0                ha9c0a0a_2    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libwebp-base              1.3.2                hd590300_0    conda-forge
libxcb                    1.15                 h0b41bf4_0    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
metis                     5.1.0             h59595ed_1007    conda-forge
multimethod               1.9.1              pyhd8ed1ab_0    conda-forge
mumps-include             5.2.1               ha770c72_11    conda-forge
mumps-seq                 5.2.1               h2104b81_11    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
ncurses                   6.4                  hcb278e6_0    conda-forge
nlopt                     2.7.1            py39h74f0fd2_4    conda-forge
nptyping                  2.5.0              pyhd8ed1ab_0    conda-forge
numpy                     1.26.0           py39h474f0d3_0    conda-forge
occt                      7.7.1           novtk_h130ccc2_101    conda-forge
ocp                       7.7.1.1dev               py39_0    cadquery
openexr                   3.2.1                h3f0fd8d_0    conda-forge
openjpeg                  2.5.0                h488ebb8_3    conda-forge
openssl                   3.1.3                hd590300_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       23.3               pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.39             pyha770c72_0    conda-forge
prompt_toolkit            3.0.39               hd8ed1ab_0    conda-forge
proxsuite                 0.5.0            py39h7633fee_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
pyparsing                 3.1.1              pyhd8ed1ab_0    conda-forge
python                    3.9.18          h0755675_0_cpython    conda-forge
python_abi                3.9                      4_cp39    conda-forge
rapidjson                 1.1.0             he1b5a44_1002    conda-forge
readline                  8.2                  h8228510_1    conda-forge
scipy                     1.11.3           py39h474f0d3_1    conda-forge
scotch                    6.0.9                hb2e6521_2    conda-forge
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
simde                     0.7.6                h00ab1b0_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
tinyxml2                  9.0.0                h9c3ff4c_2    conda-forge
tk                        8.6.13               h2797004_0    conda-forge
traitlets                 5.11.2             pyhd8ed1ab_0    conda-forge
typing_extensions         4.8.0              pyha770c72_0    conda-forge
typish                    1.9.3              pyhd8ed1ab_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
unicodedata2              15.1.0           py39hd1e30aa_0    conda-forge
unixodbc                  2.3.12               h661eb56_0    conda-forge
wcwidth                   0.2.8              pyhd8ed1ab_0    conda-forge
wheel                     0.41.2             pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.1.1                hd590300_0    conda-forge
xorg-libsm                1.2.4                h7391055_0    conda-forge
xorg-libx11               1.8.7                h8ee46fc_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxt                1.3.0                hd590300_1    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstd                      1.5.5                hfc55251_0    conda-forge

adam-urbanczyk Oct 20, 2023
Maintainer

Can you try conda install -c conda-forge occt=7.7.1=vtk*?

rmchurch Oct 21, 2023
Author

I do conda install -c conda-forge occt=7.7.1=all*, and it installs, and fixes the libTKIVtk import error, but now I get the same import error as when installing with mamba (which I look back, and it does install the occt all build)

In [1]: import cadquery
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
Cell In[1], line 1
----> 1 import cadquery

File ~/.conda/envs/env_cad/lib/python3.9/site-packages/cadquery/__init__.py:10
      7     __version__ = "2.4-dev"
      9 # these items point to the OCC implementation
---> 10 from .occ_impl.geom import Plane, BoundBox, Vector, Matrix, Location
     11 from .occ_impl.shapes import (
     12     Shape,
     13     Vertex,
   (...)
     20     sortWiresByBuildOrder,
     21 )
     22 from .occ_impl import exporters

File ~/.conda/envs/env_cad/lib/python3.9/site-packages/cadquery/occ_impl/geom.py:5
      1 import math
      3 from typing import overload, Sequence, Union, Tuple, Type, Optional
----> 5 from OCP.gp import (
      6     gp_Vec,
      7     gp_Ax1,
      8     gp_Ax3,
      9     gp_Pnt,
     10     gp_Dir,
     11     gp_Pln,
     12     gp_Trsf,
     13     gp_GTrsf,
     14     gp_XYZ,
     15     gp_EulerSequence,
     16     gp,
     17 )
     18 from OCP.Bnd import Bnd_Box
     19 from OCP.BRepBndLib import BRepBndLib

ImportError: /lib64/libm.so.6: version `GLIBC_2.29' not found (required by /home/rmc2/.conda/envs/env_cad/lib/python3.9/site-packages/OCP.cpython-39-x86_64-linux-gnu.so)

Also, I did try from scratch, and installing cadquery with mamba but not from the cadquery channel (mamba install cadquery, so from conda-forge), and that installs and imports fine, so its just the most recent master from the cadquery channel that I seem to get these issue.

lorenzncode Oct 21, 2023
Maintainer

For master, my env has ocp=7.7.1.0.

$ conda list "ocp|occt|cadquery"
# packages in environment at /home/lorenzn/tools/mambaforge_230901/envs/cqdev:
#
# Name                    Version                   Build  Channel
cadquery                  2.4.0.dev0                dev_0    <develop>
occt                      7.7.1           all_h16763a6_201    conda-forge
ocp                       7.7.1.0         py311h54fcf19_1    conda-forge
ocp-stubs                 7.7.0                     dev_0    <develop>

Using mambaforge:
mamba install -c cadquery cadquery=master ocp=7.7.1.0

or for the released version 2.3.1:
mamba install cadquery

Answer selected by rmchurch

rmchurch Oct 21, 2023
Author

Ah great, I was just experimenting with ocp versions, but kept getting dropped to a lower version from cadquery=master, but using

mamba install -c cadquery cadquery=master ocp=7.7.1.0

installs master and does not give any import errors.
Thanks all, this is working for me now.

adam-urbanczyk Oct 22, 2023
Maintainer

FYI: I marked ocp 7.7.1.1dev with a dev label. It should not be possible to install it without explicitly specifying the label. Solving vtk vs all will probably require changing the dependencies specification of ocp.

lorenzncode Oct 22, 2023
Maintainer

Thanks @adam-urbanczyk! I tested with a clean install and confirm ocp 7.7.1.1dev was not picked up.

$ curl -L -O https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh
$ bash Mambaforge-$(uname)-$(uname -m).sh -b -p ~/mambaforge
$ . ~/mambaforge/bin/activate
$ conda create -n cqtest
$ conda activate cqtest
$ mamba install -c cadquery cadquery=master 
$ conda list "occt|ocp|cadquery"
# packages in environment at /home/lorenzn/mambaforge/envs/cqtest:
#
# Name                    Version                   Build  Channel
cadquery                  master          2.3.1_55_g17846d6    cadquery
occt                      7.7.1           all_h16763a6_201    conda-forge
ocp                       7.7.1.0         py311h54fcf19_1    conda-forge

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Install on Springdale Linux not working #1422

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Install on Springdale Linux not working #1422

rmchurch Oct 19, 2023

Replies: 1 comment · 7 replies

adam-urbanczyk Oct 20, 2023 Maintainer

rmchurch Oct 20, 2023 Author

adam-urbanczyk Oct 20, 2023 Maintainer

rmchurch Oct 21, 2023 Author

lorenzncode Oct 21, 2023 Maintainer

rmchurch Oct 21, 2023 Author

adam-urbanczyk Oct 22, 2023 Maintainer

lorenzncode Oct 22, 2023 Maintainer

rmchurch
Oct 19, 2023

Replies: 1 comment 7 replies

adam-urbanczyk
Oct 20, 2023
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rmchurch Oct 20, 2023
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adam-urbanczyk Oct 20, 2023
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rmchurch Oct 21, 2023
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lorenzncode Oct 21, 2023
Maintainer

rmchurch Oct 21, 2023
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adam-urbanczyk Oct 22, 2023
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lorenzncode Oct 22, 2023
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