An R package for mixed fisheries Management Strategy Evaluation (MSE) using multi-stock and multi-fleet Operating Models.
- can carry out full MSE to evaluate the performance of Management Procedures.
- can carry out smaller-scale simulations with perfect stock observations to evaluate advice rule behaviour.
- can accommodate a range of fleet and stock parameter uncertainties.
- makes use of FLR libraries (https://github.com/flr)
- has built-in helper functions to condition Operating Models from fitted SAM (State-space Assessment Model; https://github.com/fishfollower/SAM) models with uncertainty
- has built-in diagnostic tools to check for errors occuring in the Management Procedure (e.g. assessment model fitting errors) or the Operating Model (e.g. fleet effort optimisation)
MixME depends on TMB, FLR libraries and several other packages. Install these first:
install.packages(c("FLCore","FLFishery","FLasher","mse"), repos = "http://flr-project.org/R")
install.packages(c("TMB","doParallel","foreach"))
MixME can be installed using the 'devtools' package
install.packages("devtools")
devtools::install_github("CefasRepRes/MixME")
The Open Government Licence (OGL) Version 3
This source code is licensed under the Open Government Licence v3.0. To view this licence, visit www.nationalarchives.gov.uk/doc/open-government-licence/version/3 or write to the Information Policy Team, The National Archives, Kew, Richmond, Surrey, TW9 4DU.