Use ClimaCore 0.10.56

.buildkite/pipeline.yml

@@ -16,14 +16,18 @@ env:
   PERF_CONFIG_PATH: "config/perf_configs"
   MPI_CONFIG_PATH: "config/mpi_configs"
   SLURM_KILL_BAD_EXIT: 1
+  LD_LIBRARY_PATH: "/central/software/hdf5/1.12.2-ompi415//lib:/central/software/OpenMPI/4.1.5_cuda-12.2//lib:/central/software/ucx/1.14.1_cuda-12.2//lib:/central/software/CUDA/12.2/lib64:/central/software/CUDA/12.2/extras/CUPTI/lib64:/central/software/CUDA/12.2/targets/x86_64-linux/lib:/central/software/julia/1.9.3/lib"
 
 steps:
   - label: "init :computer:"
     key: "init_cpu_env"
     command:
       - "echo $$JULIA_DEPOT_PATH"
+      - "echo HEY $LD_LIBRARY_PATH"
+      - "echo HEY $$LD_LIBRARY_PATH"
 
       - echo "--- Configure MPI"
+
       - julia -e 'using Pkg; Pkg.add("MPIPreferences"); using MPIPreferences; use_system_binary()'
 
       - echo "--- Instantiate project"

Project.toml

@@ -51,7 +51,7 @@ Artifacts = "1"
 AtmosphericProfilesLibrary = "0.1"
 CLIMAParameters = "0.7.25"
 ClimaComms = "0.5.6"
-ClimaCore = "0.10.55"
+ClimaCore = "0.10.56"
 ClimaTimeSteppers = "0.7.14"
 CloudMicrophysics = "0.15.0"
 Colors = "0.12"

docs/Manifest.toml

@@ -5,9 +5,9 @@ manifest_format = "2.0"
 project_hash = "1b7b7b12f210f5da35bb4f69ad563a64237fde09"
 
 [[deps.ADTypes]]
-git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003"
+git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7"
 uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
-version = "0.2.4"
+version = "0.2.5"
 
 [[deps.AMD]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
@@ -234,12 +234,6 @@ git-tree-sha1 = "92394521ec4582c11d089a3b15b76ef2cb850994"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
 version = "0.10.0+1"
 
-[[deps.Calculus]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
-uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
-version = "0.5.1"
-
 [[deps.CatIndices]]
 deps = ["CustomUnitRanges", "OffsetArrays"]
 git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc"
@@ -444,9 +438,9 @@ version = "0.1.0+0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "de4709e30bd5490435122c4b415b90a812c23fbf"
+git-tree-sha1 = "5e365e0744ae1fdd44e62416343e7bfe848999d8"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.138.1"
+version = "6.139.0"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseChainRulesCoreExt = "ChainRulesCore"
@@ -515,22 +509,6 @@ weakdeps = ["ChainRulesCore", "SparseArrays"]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
-[[deps.Distributions]]
-deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a"
-uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.103"
-
-    [deps.Distributions.extensions]
-    DistributionsChainRulesCoreExt = "ChainRulesCore"
-    DistributionsDensityInterfaceExt = "DensityInterface"
-    DistributionsTestExt = "Test"
-
-    [deps.Distributions.weakdeps]
-    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-    DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
-    Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
 git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
@@ -554,12 +532,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 version = "1.6.0"
 
-[[deps.DualNumbers]]
-deps = ["Calculus", "NaNMath", "SpecialFunctions"]
-git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
-uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
-version = "0.6.8"
-
 [[deps.Elliptic]]
 git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608"
 uuid = "b305315f-e792-5b7a-8f41-49f472929428"
@@ -601,9 +573,9 @@ version = "3.3.10+0"
 
 [[deps.FastBroadcast]]
 deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"]
-git-tree-sha1 = "9d77cb1caf03e67514ba60bcfc47c6e131b1950c"
+git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136"
 uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898"
-version = "0.2.7"
+version = "0.2.8"
 
 [[deps.FastClosures]]
 git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef"
@@ -734,12 +706,6 @@ git-tree-sha1 = "4cc2bb72df6ff40b055295fdef6d92955f9dede8"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
 version = "1.12.2+2"
 
-[[deps.HypergeometricFunctions]]
-deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
-git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685"
-uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
-version = "0.3.23"
-
 [[deps.IOCapture]]
 deps = ["Logging", "Random"]
 git-tree-sha1 = "d75853a0bdbfb1ac815478bacd89cd27b550ace6"
@@ -865,9 +831,9 @@ version = "0.2.1+0"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "95063c5bc98ba0c47e75e05ae71f1fed4deac6f6"
+git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.12"
+version = "0.9.13"
 weakdeps = ["EnzymeCore"]
 
     [deps.KernelAbstractions.extensions]
@@ -897,9 +863,9 @@ weakdeps = ["BFloat16s"]
 
 [[deps.LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "a84f8f1e8caaaa4e3b4c101306b9e801d3883ace"
+git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.27+0"
+version = "0.0.27+1"
 
 [[deps.LLVMLoopInfo]]
 git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea"
@@ -924,9 +890,9 @@ uuid = "10f19ff3-798f-405d-979b-55457f8fc047"
 version = "0.1.15"
 
 [[deps.LazilyInitializedFields]]
-git-tree-sha1 = "410fe4739a4b092f2ffe36fcb0dcc3ab12648ce1"
+git-tree-sha1 = "8f7f3cabab0fd1800699663533b6d5cb3fc0e612"
 uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf"
-version = "1.2.1"
+version = "1.2.2"
 
 [[deps.Lazy]]
 deps = ["MacroTools"]
@@ -1070,6 +1036,12 @@ deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
 version = "2.28.2+0"
 
+[[deps.Memoize]]
+deps = ["MacroTools"]
+git-tree-sha1 = "2b1dfcba103de714d31c033b5dacc2e4a12c7caa"
+uuid = "c03570c3-d221-55d1-a50c-7939bbd78826"
+version = "0.4.4"
+
 [[deps.MicrosoftMPI_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "b01beb91d20b0d1312a9471a36017b5b339d26de"
@@ -1185,12 +1157,6 @@ git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
 version = "1.6.2"
 
-[[deps.PDMats]]
-deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99"
-uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.29"
-
 [[deps.PaddedViews]]
 deps = ["OffsetArrays"]
 git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f"
@@ -1263,16 +1229,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250"
 version = "1.4.1"
 
 [[deps.PrettyTables]]
-deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1"
+deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]
+git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "2.2.8"
+version = "2.3.0"
 
 [[deps.Primes]]
 deps = ["IntegerMathUtils"]
-git-tree-sha1 = "4c9f306e5d6603ae203c2000dd460d81a5251489"
+git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e"
 uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae"
-version = "0.5.4"
+version = "0.5.5"
 
 [[deps.Printf]]
 deps = ["Unicode"]
@@ -1284,17 +1250,17 @@ git-tree-sha1 = "b437cdb0385ed38312d91d9c00c20f3798b30256"
 uuid = "49802e3a-d2f1-5c88-81d8-b72133a6f568"
 version = "1.5.1"
 
-[[deps.QuadGK]]
-deps = ["DataStructures", "LinearAlgebra"]
-git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1"
-uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
-version = "2.9.1"
-
 [[deps.QuasiMonteCarlo]]
-deps = ["Accessors", "ConcreteStructs", "Distributions", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Sobol", "StatsBase"]
-git-tree-sha1 = "5654ee2631b0b291c639b2e6c81bbf06128bce85"
+deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"]
+git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341"
 uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b"
-version = "0.3.2"
+version = "0.3.3"
+
+    [deps.QuasiMonteCarlo.extensions]
+    QuasiMonteCarloDistributionsExt = "Distributions"
+
+    [deps.QuasiMonteCarlo.weakdeps]
+    Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 
 [[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@@ -1373,18 +1339,6 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
 uuid = "ae029012-a4dd-5104-9daa-d747884805df"
 version = "1.3.0"
 
-[[deps.Rmath]]
-deps = ["Random", "Rmath_jll"]
-git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
-uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
-version = "0.7.1"
-
-[[deps.Rmath_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da"
-uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
-version = "0.4.0+0"
-
 [[deps.RootSolvers]]
 deps = ["ForwardDiff"]
 git-tree-sha1 = "833d9914e748ca9329b762a82ec912897975f8d8"
@@ -1408,9 +1362,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
-git-tree-sha1 = "dd2d18b981d09a2376ba49c5fab480f497992c88"
+git-tree-sha1 = "baa0f858af55ea937183c988bd4b3e79e0bf699a"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.8.0"
+version = "2.8.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1544,17 +1498,6 @@ git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 version = "0.34.2"
 
-[[deps.StatsFuns]]
-deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a"
-uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "1.3.0"
-weakdeps = ["ChainRulesCore", "InverseFunctions"]
-
-    [deps.StatsFuns.extensions]
-    StatsFunsChainRulesCoreExt = "ChainRulesCore"
-    StatsFunsInverseFunctionsExt = "InverseFunctions"
-
 [[deps.StrideArraysCore]]
 deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
 git-tree-sha1 = "e7dd250422df290cee14960c1ee144b44ac3dd77"
@@ -1712,6 +1655,11 @@ git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e"
 uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249"
 version = "0.1.3"
 
+[[deps.WeakValueDicts]]
+git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0"
+uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1"
+version = "0.1.0"
+
 [[deps.WoodburyMatrices]]
 deps = ["LinearAlgebra", "SparseArrays"]
 git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3"