From 0f8d1df959158a4a786b73563f8cf7ce89bee093 Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Sun, 1 Oct 2023 16:10:45 -0700 Subject: [PATCH] Update manifests --- docs/Manifest.toml | 57 +++++++++++++++++++++++++++--------------- examples/Manifest.toml | 26 +++++++++---------- perf/Manifest.toml | 26 +++++++++---------- 3 files changed, 63 insertions(+), 46 deletions(-) diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 1ecaf148fb..4cc92ff3a2 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.9.3" manifest_format = "2.0" -project_hash = "7fc686bc0a71a5f83e48b1285d03c4910b039279" +project_hash = "0ec43c631f23df4ba1817c10e57a9aadcc74d6ad" [[deps.ADTypes]] git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" @@ -419,9 +419,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773" +git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.2" +version = "6.130.4" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" @@ -504,16 +504,16 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.3" [[deps.Documenter]] -deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67" +deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"] +git-tree-sha1 = "f667b805e90d643aeb1ca70189827f991a7cc115" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.27.25" +version = "1.1.0" [[deps.DocumenterCitations]] -deps = ["Bibliography", "Documenter", "Markdown", "OrderedCollections", "Unicode"] -git-tree-sha1 = "210f08c5b68e7c058aaa3ade24ff4fd7b6638789" +deps = ["AbstractTrees", "Bibliography", "Documenter", "Markdown", "MarkdownAST", "OrderedCollections", "Unicode"] +git-tree-sha1 = "0c5c141a66807796d580ef4fe592647132832f39" uuid = "daee34ce-89f3-4625-b898-19384cb65244" -version = "1.1.0" +version = "1.2.1" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -710,9 +710,9 @@ version = "1.9.0" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -910,6 +910,11 @@ git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.14" +[[deps.LazilyInitializedFields]] +git-tree-sha1 = "410fe4739a4b092f2ffe36fcb0dcc3ab12648ce1" +uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" +version = "1.2.1" + [[deps.Lazy]] deps = ["MacroTools"] git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" @@ -1088,6 +1093,12 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MarkdownAST]] +deps = ["AbstractTrees", "Markdown"] +git-tree-sha1 = "e8513266815200c0c8f522d6d44ffb5e9b366ae4" +uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391" +version = "0.1.1" + [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" @@ -1170,10 +1181,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "e10debcea868cd6e51249e8eeaf191c25f68a640" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "847f6b564d74422440850a99912c314595be4023" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.10.1" +version = "2.0.0" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1216,9 +1227,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "ede6c2334cb30bc83a450b282c10d0ae82fc122e" +git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.56.0" +version = "6.57.0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1396,6 +1407,12 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" +[[deps.RegistryInstances]] +deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"] +git-tree-sha1 = "ffd19052caf598b8653b99404058fce14828be51" +uuid = "2792f1a3-b283-48e8-9a74-f99dce5104f3" +version = "0.1.0" + [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" @@ -1443,9 +1460,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "dd92cbd59870689fc460e821493ec5834c657b9a" +git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.0.6" +version = "2.0.7" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -1822,9 +1839,9 @@ version = "0.5.5" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] diff --git a/examples/Manifest.toml b/examples/Manifest.toml index ed900b0262..aa4542ce16 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -524,9 +524,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773" +git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.2" +version = "6.130.4" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" @@ -967,9 +967,9 @@ version = "1.0.2" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -1663,10 +1663,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "e10debcea868cd6e51249e8eeaf191c25f68a640" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "847f6b564d74422440850a99912c314595be4023" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.10.1" +version = "2.0.0" [[deps.Observables]] git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" @@ -1756,9 +1756,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "ede6c2334cb30bc83a450b282c10d0ae82fc122e" +git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.56.0" +version = "6.57.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2152,9 +2152,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "dd92cbd59870689fc460e821493ec5834c657b9a" +git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.0.6" +version = "2.0.7" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -2675,9 +2675,9 @@ version = "1.18.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 97fd573eea..fc07376d38 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -541,9 +541,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773" +git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.2" +version = "6.130.4" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" @@ -1014,9 +1014,9 @@ version = "1.0.2" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -1709,10 +1709,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "e10debcea868cd6e51249e8eeaf191c25f68a640" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "847f6b564d74422440850a99912c314595be4023" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.10.1" +version = "2.0.0" [[deps.Observables]] git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" @@ -1802,9 +1802,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "ede6c2334cb30bc83a450b282c10d0ae82fc122e" +git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.56.0" +version = "6.57.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2222,9 +2222,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "dd92cbd59870689fc460e821493ec5834c657b9a" +git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.0.6" +version = "2.0.7" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -2769,9 +2769,9 @@ version = "1.18.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]