From b4a9175ed96c223a270c6fe02a1321703343fe58 Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Fri, 29 Sep 2023 12:01:55 -0700 Subject: [PATCH 1/2] Update CUDA, SciMLBase cnd StatsBase ompats --- Project.toml | 6 +++--- examples/Project.toml | 2 +- perf/Project.toml | 2 +- test/Project.toml | 2 +- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/Project.toml b/Project.toml index de111355d9..d096988198 100644 --- a/Project.toml +++ b/Project.toml @@ -52,7 +52,7 @@ ArgParse = "1" ArtifactWrappers = "0.2" AtmosphericProfilesLibrary = "0.1" CLIMAParameters = "0.7" -CUDA = "4" +CUDA = "4, 5" ClimaComms = "0.5" ClimaCore = "0.10" ClimaTimeSteppers = "0.7" @@ -75,9 +75,9 @@ OrdinaryDiffEq = "5, 6" Pkg = "1.8" RRTMGP = "0.9" RootSolvers = "0.2, 0.3, 0.4" -SciMLBase = "1" +SciMLBase = "1, 2" StaticArrays = "1" -StatsBase = "0.33" +StatsBase = "0.33, 0.34" SurfaceFluxes = "0.7" TerminalLoggers = "0.1" Thermodynamics = "0.11" diff --git a/examples/Project.toml b/examples/Project.toml index e7d2b5f097..c5fc02ab40 100644 --- a/examples/Project.toml +++ b/examples/Project.toml @@ -81,7 +81,7 @@ PoissonRandom = "0.4" PrettyTables = "1, 2" ProgressLogging = "0.1" QuadGK = "2" -SciMLBase = "1" +SciMLBase = "1, 2" TOML = "1" julia = "1.7" diff --git a/perf/Project.toml b/perf/Project.toml index 3ab9c091c1..fe9944cc76 100644 --- a/perf/Project.toml +++ b/perf/Project.toml @@ -90,7 +90,7 @@ PrettyTables = "1, 2" ProfileCanvas = "0.1" ProgressLogging = "0.1" QuadGK = "2" -SciMLBase = "1" +SciMLBase = "1, 2" SnoopCompileCore = "2" TOML = "1" URIs = "1" diff --git a/test/Project.toml b/test/Project.toml index 2d4044eba7..6c4a0cb15a 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -88,7 +88,7 @@ PrettyTables = "1, 2" ProgressLogging = "0.1" QuadGK = "2" SafeTestsets = "0.1" -SciMLBase = "1" +SciMLBase = "1, 2" TOML = "1" [extras] From 5d06ffdb69cc88fa8b88bbe576dd68b4e57d8d14 Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Fri, 29 Sep 2023 12:14:32 -0700 Subject: [PATCH 2/2] Update manifests --- .dev/Manifest.toml | 8 +++---- docs/Manifest.toml | 52 +++++++++++++++++++++------------------- examples/Manifest.toml | 54 ++++++++++++++++++++++-------------------- perf/Manifest.toml | 54 ++++++++++++++++++++++-------------------- 4 files changed, 87 insertions(+), 81 deletions(-) diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml index afd2d40c16..08985d3afa 100644 --- a/.dev/Manifest.toml +++ b/.dev/Manifest.toml @@ -28,9 +28,9 @@ version = "0.8.12" [[deps.Compat]] deps = ["UUIDs"] -git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7" +git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.9.0" +version = "4.10.0" [deps.Compat.extensions] CompatLinearAlgebraExt = "LinearAlgebra" @@ -79,9 +79,9 @@ version = "0.21.4" [[deps.JuliaFormatter]] deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "2aa8cb5410821365a87f326631d7f6ce07db8882" +git-tree-sha1 = "c0ac2f93058fd148267154c42dd7dc79869f7923" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.36" +version = "1.0.37" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 4b2a933356..1ecaf148fb 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -254,9 +254,9 @@ version = "0.16.1" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" +git-tree-sha1 = "c551fb07ddc155fb7079a9d4f330c10d2f2a1502" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.3" +version = "0.5.4" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] @@ -266,9 +266,9 @@ version = "0.10.51" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "203e4f8208bcd1584dcdd9e2210dd1a33b8f96ab" +git-tree-sha1 = "1b437bf71f2e35925e957715361bcfa60f68351a" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.9" +version = "0.7.10" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -418,13 +418,14 @@ uuid = "cd4c43a9-7502-52ba-aa6d-59fb2a88580b" version = "0.1.0+0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "0d9982e8dee851d519145857e79a17ee33ede154" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.0" +version = "6.130.2" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = "Enzyme" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -436,6 +437,7 @@ version = "6.130.0" [deps.DiffEqBase.weakdeps] Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -483,9 +485,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "9e11104e7b41a8a5f04e8694467fc1f94a135bd7" +git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.101" +version = "0.25.102" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -702,9 +704,9 @@ version = "0.1.0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] @@ -876,15 +878,15 @@ version = "0.10.0" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1036,9 +1038,9 @@ version = "2023.2.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "df53d0e1e0dbebf2315f4cd35e13e52ad43416c2" +git-tree-sha1 = "b4d8707e42b693720b54f0b3434abee6dd4d947a" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.15" +version = "0.20.16" [deps.MPI.extensions] AMDGPUExt = "AMDGPU" @@ -1261,9 +1263,9 @@ version = "0.3.3" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "d4c9ebdc6528a4aaf7cfcf43b482e927267b400d" +git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.6" +version = "0.7.7" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1441,9 +1443,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +git-tree-sha1 = "dd92cbd59870689fc460e821493ec5834c657b9a" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" +version = "2.0.6" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -1581,9 +1583,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "d5fb407ec3179063214bc6277712928ba78459e2" +git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.4" +version = "1.6.5" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -1607,9 +1609,9 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] diff --git a/examples/Manifest.toml b/examples/Manifest.toml index 01a61cfbc0..ed900b0262 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.9.3" manifest_format = "2.0" -project_hash = "29934b734692261a625d91c36cff961d40b7b683" +project_hash = "2d49c534fc32df8e020c1e281ecb638a59571404" [[deps.ADTypes]] git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" @@ -293,9 +293,9 @@ version = "0.16.1" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" +git-tree-sha1 = "c551fb07ddc155fb7079a9d4f330c10d2f2a1502" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.3" +version = "0.5.4" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] @@ -335,9 +335,9 @@ version = "0.7.1" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "203e4f8208bcd1584dcdd9e2210dd1a33b8f96ab" +git-tree-sha1 = "1b437bf71f2e35925e957715361bcfa60f68351a" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.9" +version = "0.7.10" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -523,13 +523,14 @@ uuid = "cd4c43a9-7502-52ba-aa6d-59fb2a88580b" version = "0.1.0+0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "0d9982e8dee851d519145857e79a17ee33ede154" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.0" +version = "6.130.2" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = "Enzyme" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -541,6 +542,7 @@ version = "6.130.0" [deps.DiffEqBase.weakdeps] Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -588,9 +590,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "9e11104e7b41a8a5f04e8694467fc1f94a135bd7" +git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.101" +version = "0.25.102" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -948,9 +950,9 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] @@ -1222,15 +1224,15 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1879,9 +1881,9 @@ version = "0.4.4" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "d4c9ebdc6528a4aaf7cfcf43b482e927267b400d" +git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.6" +version = "0.7.7" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2094,9 +2096,9 @@ version = "1.3.0" [[deps.Revise]] deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "7364d5f608f3492a4352ab1d40b3916955dc6aec" +git-tree-sha1 = "609c26951d80551620241c3d7090c71a73da75ab" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.5" +version = "3.5.6" [[deps.RingLists]] deps = ["Random"] @@ -2150,9 +2152,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +git-tree-sha1 = "dd92cbd59870689fc460e821493ec5834c657b9a" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" +version = "2.0.6" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -2354,9 +2356,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "d5fb407ec3179063214bc6277712928ba78459e2" +git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.4" +version = "1.6.5" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -2380,9 +2382,9 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index e5ba5a2716..97fd573eea 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.9.3" manifest_format = "2.0" -project_hash = "967da1a008eca13e2322097c9c4f6c2a0c6d67ad" +project_hash = "88cff4be951174939b5ca391858b2e951b1f42f8" [[deps.ADTypes]] git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" @@ -304,9 +304,9 @@ version = "0.16.1" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "6cbe1b835f91033e6326a92ac1a1f6a8c9b2215f" +git-tree-sha1 = "c551fb07ddc155fb7079a9d4f330c10d2f2a1502" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.3" +version = "0.5.4" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] @@ -346,9 +346,9 @@ version = "0.7.1" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "203e4f8208bcd1584dcdd9e2210dd1a33b8f96ab" +git-tree-sha1 = "1b437bf71f2e35925e957715361bcfa60f68351a" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.9" +version = "0.7.10" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -540,13 +540,14 @@ uuid = "cd4c43a9-7502-52ba-aa6d-59fb2a88580b" version = "0.1.0+0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "0d9982e8dee851d519145857e79a17ee33ede154" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.0" +version = "6.130.2" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = "Enzyme" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -558,6 +559,7 @@ version = "6.130.0" [deps.DiffEqBase.weakdeps] Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -617,9 +619,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "9e11104e7b41a8a5f04e8694467fc1f94a135bd7" +git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.101" +version = "0.25.102" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -989,9 +991,9 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.Graphviz_jll]] deps = ["Artifacts", "Cairo_jll", "Expat_jll", "JLLWrappers", "Libdl", "Pango_jll", "Pkg"] @@ -1274,15 +1276,15 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1931,9 +1933,9 @@ version = "0.4.4" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "d4c9ebdc6528a4aaf7cfcf43b482e927267b400d" +git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.6" +version = "0.7.7" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2164,9 +2166,9 @@ version = "1.1.1" [[deps.Revise]] deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "7364d5f608f3492a4352ab1d40b3916955dc6aec" +git-tree-sha1 = "609c26951d80551620241c3d7090c71a73da75ab" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.5" +version = "3.5.6" [[deps.RingLists]] deps = ["Random"] @@ -2220,9 +2222,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +git-tree-sha1 = "dd92cbd59870689fc460e821493ec5834c657b9a" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" +version = "2.0.6" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -2436,9 +2438,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "d5fb407ec3179063214bc6277712928ba78459e2" +git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.4" +version = "1.6.5" weakdeps = ["Statistics"] [deps.StaticArrays.extensions] @@ -2462,9 +2464,9 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]