From 968f03288f31cc45aef44f900652d58598b53c35 Mon Sep 17 00:00:00 2001 From: Julia Sloan Date: Fri, 26 Jan 2024 15:22:50 -0800 Subject: [PATCH] tag v0.20.0 --- Project.toml | 2 +- docs/Manifest.toml | 70 ++++++++++-------- examples/Manifest.toml | 121 +++++++++++++++++++------------- perf/Manifest.toml | 97 ++++++++++++++----------- regression_tests/ref_counter.jl | 2 +- 5 files changed, 171 insertions(+), 121 deletions(-) diff --git a/Project.toml b/Project.toml index 41a28fab32a..4204f05889f 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "ClimaAtmos" uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" authors = ["Climate Modeling Alliance"] -version = "0.19.2" +version = "0.20.0" [deps] ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 3503505206b..3443bc5fac7 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -182,9 +182,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "a085251dfe4b0f732fe2b65d5354e6af91a8e931" +git-tree-sha1 = "626a0dd920d1ed9285e74a430df6f110a5b962e0" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.7.26" +version = "0.8.4" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -211,9 +211,9 @@ version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536" +git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.2" +version = "0.2.3" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -223,9 +223,9 @@ version = "0.10.1+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" +git-tree-sha1 = "0d12ee16b3f62e4e33c3277773730a5b21a74152" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.19.1" +version = "1.20.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -235,7 +235,7 @@ weakdeps = ["SparseArrays"] deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"] path = ".." uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.19.2" +version = "0.20.0" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] @@ -245,9 +245,9 @@ version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" +git-tree-sha1 = "541bf25a8adc3c7ddf8d45a96149964f5cfbb074" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.8" +version = "0.11.9" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -267,9 +267,9 @@ version = "0.1.12" [[deps.CloudMicrophysics]] deps = ["CLIMAParameters", "DocStringExtensions", "ForwardDiff", "RootSolvers", "SpecialFunctions", "Thermodynamics"] -git-tree-sha1 = "a6993c57af74e2e0f2191b556178cc8d8c0df9d6" +git-tree-sha1 = "0c0be34fad945b95fd3c94cca9003bacae990ccf" uuid = "6a9e3e04-43cd-43ba-94b9-e8782df3c71b" -version = "0.15.1" +version = "0.15.2" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -344,9 +344,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" version = "0.2.4" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -673,9 +673,9 @@ weakdeps = ["MPI"] [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" +git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+0" +version = "1.14.3+1" [[deps.IOCapture]] deps = ["Logging", "Random"] @@ -696,9 +696,13 @@ version = "1.4.0" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "2679907708edd9bbe2bd98585e575b48f17902c8" +git-tree-sha1 = "2aaf998568ab59643cefb0fc17eba42f9d5bef37" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.8.2" +version = "0.9.0" +weakdeps = ["CLIMAParameters"] + + [deps.Insolation.extensions] + CreateParametersExt = "CLIMAParameters" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1236,14 +1240,15 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" +git-tree-sha1 = "16f1bb9de02b8bce31a7b2495345532901214cae" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.5.4" +version = "3.6.2" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -1251,6 +1256,7 @@ version = "3.5.4" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1294,9 +1300,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0" +git-tree-sha1 = "d91985cfda7d730a885d7dbc89889e8184b72802" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.20.0" +version = "2.21.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1454,15 +1460,19 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" [[deps.SurfaceFluxes]] -deps = ["CLIMAParameters", "DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "a167924897731ee57ef0197bb19357bfc2d007bc" +deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.8.1" +version = "0.9.1" +weakdeps = ["CLIMAParameters"] + + [deps.SurfaceFluxes.extensions] + CreateParametersExt = "CLIMAParameters" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" +git-tree-sha1 = "34573fc920adfd457c5be704098d0168e4f20e54" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.3" +version = "0.3.4" [[deps.TOML]] deps = ["Dates"] @@ -1509,9 +1519,13 @@ version = "1.0.1" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] -git-tree-sha1 = "2de4b5ccc71baf3578959928c295a2fa13105db7" +git-tree-sha1 = "8d883ae8d91565781b2cdf81316b7f6f6080b1f3" uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -version = "0.11.2" +version = "0.11.5" +weakdeps = ["CLIMAParameters"] + + [deps.Thermodynamics.extensions] + CreateParametersExt = "CLIMAParameters" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] diff --git a/examples/Manifest.toml b/examples/Manifest.toml index 79677eec8e6..fcda4f91dac 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -152,6 +152,12 @@ weakdeps = ["SparseArrays"] [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.BenchmarkTools]] +deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "1.4.0" + [[deps.BitFlags]] git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -188,9 +194,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "7c45e066cd04afc7e29e229045506f5a9afb8970" +git-tree-sha1 = "626a0dd920d1ed9285e74a430df6f110a5b962e0" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.8.1" +version = "0.8.4" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -232,9 +238,9 @@ version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536" +git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.2" +version = "0.2.3" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -250,9 +256,9 @@ version = "1.0.5" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "ec7c21818710774e72195bda25c70fd6c56bc005" +git-tree-sha1 = "8af8e491c0809610cdec28c9c44b1f1dce01046d" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.11.5" +version = "0.11.6" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -274,9 +280,9 @@ version = "0.2.2" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" +git-tree-sha1 = "0d12ee16b3f62e4e33c3277773730a5b21a74152" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.19.1" +version = "1.20.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -296,7 +302,7 @@ weakdeps = ["CairoMakie"] deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"] path = ".." uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.19.2" +version = "0.20.0" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] @@ -306,7 +312,7 @@ version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" +git-tree-sha1 = "541bf25a8adc3c7ddf8d45a96149964f5cfbb074" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" version = "0.11.9" weakdeps = ["Krylov"] @@ -368,6 +374,12 @@ git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" version = "1.3.5" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] +git-tree-sha1 = "c0ae2a86b162fb5d7acc65269b469ff5b8a73594" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.1" + [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" @@ -495,9 +507,9 @@ uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce" version = "1.0.2" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -915,15 +927,15 @@ version = "0.25.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "a8c834cdae6a8347c72eea19930ebdaabb6015e6" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.1" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "2abcce0c099dfb0863efc261be904fc2b85eccdd" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.1+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -939,9 +951,9 @@ version = "1.3.3" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "424a5a6ce7c5d97cca7bcc4eac551b97294c54af" +git-tree-sha1 = "5694b56ccf9d15addedc35e9a4ba9c317721b788" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.9" +version = "0.4.10" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -1000,9 +1012,9 @@ weakdeps = ["MPI"] [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" +git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+0" +version = "1.14.3+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -1040,10 +1052,10 @@ uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.7" [[deps.ImageCore]] -deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] -git-tree-sha1 = "fc5d1d3443a124fde6e92d0260cd9e064eba69f8" +deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] +git-tree-sha1 = "b2a7eaa169c13f5bcae8131a83bc30eff8f71be0" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" -version = "0.10.1" +version = "0.10.2" [[deps.ImageFiltering]] deps = ["CatIndices", "ComputationalResources", "DataStructures", "FFTViews", "FFTW", "ImageBase", "ImageCore", "LinearAlgebra", "OffsetArrays", "PrecompileTools", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "TiledIteration"] @@ -1524,16 +1536,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "a37c6610dd20425b131caf65d52abdf859da5ab1" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] +git-tree-sha1 = "5458e49833d178c071dd6ab6938ac5320f37bc98" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.20.4" +version = "0.20.5" [[deps.MakieCore]] deps = ["Observables", "REPL"] -git-tree-sha1 = "ec5db7bb2dc9b85072658dcb2d3ad09569b09ac9" +git-tree-sha1 = "248b7a4be0f92b497f7a331aed02c1e9a878f46b" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.7.2" +version = "0.7.3" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1549,6 +1561,12 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "e2ae8cf5ac6daf5a3959f7f6ded9c2028b61d09d" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.25.1" + [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" @@ -1611,6 +1629,12 @@ git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" version = "0.4.4" +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.4.0" + [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] git-tree-sha1 = "4704758e7dd9c843f0a99b18a26aa2d88dd8b8e6" @@ -1748,10 +1772,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "f55af9918e2a67dcadf5ec758a5ff25746c3819f" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.8" +version = "1.8.0" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1858,10 +1882,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "38a748946dca52a622e79eea6ed35c6737499109" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.0" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1905,6 +1929,7 @@ deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "4.0.6" +weakdeps = ["ChainRulesCore", "FFTW", "MakieCore", "MutableArithmetics"] [deps.Polynomials.extensions] PolynomialsChainRulesCoreExt = "ChainRulesCore" @@ -1912,12 +1937,6 @@ version = "4.0.6" PolynomialsMakieCoreExt = "MakieCore" PolynomialsMutableArithmeticsExt = "MutableArithmetics" - [deps.Polynomials.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" - MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" - MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -2071,14 +2090,15 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" +git-tree-sha1 = "16f1bb9de02b8bce31a7b2495345532901214cae" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.5.4" +version = "3.6.2" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2086,6 +2106,7 @@ version = "3.5.4" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2158,9 +2179,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0" +git-tree-sha1 = "d91985cfda7d730a885d7dbc89889e8184b72802" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.20.0" +version = "2.21.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2409,18 +2430,18 @@ version = "7.2.1+1" [[deps.SurfaceFluxes]] deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "261f66ff71cacf70c789e0289023bb6998c59eb9" +git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.9.0" +version = "0.9.1" weakdeps = ["CLIMAParameters"] [deps.SurfaceFluxes.extensions] CreateParametersExt = "CLIMAParameters" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" +git-tree-sha1 = "34573fc920adfd457c5be704098d0168e4f20e54" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.3" +version = "0.3.4" [[deps.TOML]] deps = ["Dates"] @@ -2477,9 +2498,9 @@ version = "1.0.1" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] -git-tree-sha1 = "b5e7511029d6aa08d049301f02c34a43a8ebfb95" +git-tree-sha1 = "8d883ae8d91565781b2cdf81316b7f6f6080b1f3" uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -version = "0.11.3" +version = "0.11.5" weakdeps = ["CLIMAParameters"] [deps.Thermodynamics.extensions] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 93da6c1ab88..ff976b2ec13 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -199,9 +199,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "7c45e066cd04afc7e29e229045506f5a9afb8970" +git-tree-sha1 = "626a0dd920d1ed9285e74a430df6f110a5b962e0" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.8.1" +version = "0.8.4" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -243,9 +243,9 @@ version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536" +git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.2" +version = "0.2.3" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -279,9 +279,9 @@ version = "0.5.1" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" +git-tree-sha1 = "0d12ee16b3f62e4e33c3277773730a5b21a74152" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.19.1" +version = "1.20.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -301,7 +301,7 @@ weakdeps = ["CairoMakie"] deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"] path = ".." uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.19.2" +version = "0.20.0" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] @@ -311,7 +311,7 @@ version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" +git-tree-sha1 = "541bf25a8adc3c7ddf8d45a96149964f5cfbb074" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" version = "0.11.9" weakdeps = ["Krylov"] @@ -373,6 +373,12 @@ git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" version = "1.3.5" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] +git-tree-sha1 = "c0ae2a86b162fb5d7acc65269b469ff5b8a73594" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.1" + [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" @@ -922,15 +928,15 @@ version = "0.25.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "a8c834cdae6a8347c72eea19930ebdaabb6015e6" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.1" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "2abcce0c099dfb0863efc261be904fc2b85eccdd" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.1+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -946,9 +952,9 @@ version = "1.3.3" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "424a5a6ce7c5d97cca7bcc4eac551b97294c54af" +git-tree-sha1 = "5694b56ccf9d15addedc35e9a4ba9c317721b788" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.9" +version = "0.4.10" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -1013,9 +1019,9 @@ weakdeps = ["MPI"] [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" +git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+0" +version = "1.14.3+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -1053,10 +1059,10 @@ uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.7" [[deps.ImageCore]] -deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] -git-tree-sha1 = "fc5d1d3443a124fde6e92d0260cd9e064eba69f8" +deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] +git-tree-sha1 = "b2a7eaa169c13f5bcae8131a83bc30eff8f71be0" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" -version = "0.10.1" +version = "0.10.2" [[deps.ImageIO]] deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"] @@ -1567,6 +1573,12 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "e2ae8cf5ac6daf5a3959f7f6ded9c2028b61d09d" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.25.1" + [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" @@ -1629,6 +1641,12 @@ git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" version = "0.4.4" +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.4.0" + [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] git-tree-sha1 = "4704758e7dd9c843f0a99b18a26aa2d88dd8b8e6" @@ -1760,10 +1778,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "f55af9918e2a67dcadf5ec758a5ff25746c3819f" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.8" +version = "1.8.0" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1876,10 +1894,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "38a748946dca52a622e79eea6ed35c6737499109" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.0" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1923,6 +1941,7 @@ deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "4.0.6" +weakdeps = ["ChainRulesCore", "FFTW", "MakieCore", "MutableArithmetics"] [deps.Polynomials.extensions] PolynomialsChainRulesCoreExt = "ChainRulesCore" @@ -1930,12 +1949,6 @@ version = "4.0.6" PolynomialsMakieCoreExt = "MakieCore" PolynomialsMutableArithmeticsExt = "MutableArithmetics" - [deps.Polynomials.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" - MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" - MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -2101,14 +2114,15 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" +git-tree-sha1 = "16f1bb9de02b8bce31a7b2495345532901214cae" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.5.4" +version = "3.6.2" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2116,6 +2130,7 @@ version = "3.5.4" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2194,9 +2209,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0" +git-tree-sha1 = "d91985cfda7d730a885d7dbc89889e8184b72802" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.20.0" +version = "2.21.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2457,18 +2472,18 @@ version = "7.2.1+1" [[deps.SurfaceFluxes]] deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "261f66ff71cacf70c789e0289023bb6998c59eb9" +git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.9.0" +version = "0.9.1" weakdeps = ["CLIMAParameters"] [deps.SurfaceFluxes.extensions] CreateParametersExt = "CLIMAParameters" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" +git-tree-sha1 = "34573fc920adfd457c5be704098d0168e4f20e54" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.3" +version = "0.3.4" [[deps.TOML]] deps = ["Dates"] @@ -2525,9 +2540,9 @@ version = "1.0.1" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] -git-tree-sha1 = "b5e7511029d6aa08d049301f02c34a43a8ebfb95" +git-tree-sha1 = "8d883ae8d91565781b2cdf81316b7f6f6080b1f3" uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -version = "0.11.3" +version = "0.11.5" weakdeps = ["CLIMAParameters"] [deps.Thermodynamics.extensions] diff --git a/regression_tests/ref_counter.jl b/regression_tests/ref_counter.jl index 878d5a02b2b..c748b568f76 100644 --- a/regression_tests/ref_counter.jl +++ b/regression_tests/ref_counter.jl @@ -1 +1 @@ -146 +147