From d78fc03c56a1ce1aa6646f4dbdbbb24869e11b4b Mon Sep 17 00:00:00 2001 From: Simon Byrne Date: Mon, 11 Dec 2023 16:26:36 -0800 Subject: [PATCH] update ClimaCore --- .dev/Manifest.toml | 4 +- Project.toml | 2 +- docs/Manifest.toml | 56 +++++++++++++----------- examples/Manifest.toml | 98 ++++++++++++++++++++---------------------- perf/Manifest.toml | 72 ++++++++++++++++--------------- 5 files changed, 118 insertions(+), 114 deletions(-) diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml index 7ae2224e040..0dec8fad25c 100644 --- a/.dev/Manifest.toml +++ b/.dev/Manifest.toml @@ -79,9 +79,9 @@ version = "0.21.4" [[deps.JuliaFormatter]] deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "2d2f630931dcf9cc4f753777a9c9ffb48d504116" +git-tree-sha1 = "b588d0d7e15d100f5d417c036e42a64d20eef496" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.43" +version = "1.0.44" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] diff --git a/Project.toml b/Project.toml index f85a3653006..c144ed44f6e 100644 --- a/Project.toml +++ b/Project.toml @@ -50,7 +50,7 @@ Artifacts = "1" AtmosphericProfilesLibrary = "0.1" CLIMAParameters = "0.7.25" ClimaComms = "0.5.6" -ClimaCore = "0.11.4" +ClimaCore = "0.11.5" ClimaTimeSteppers = "0.7.14" CloudMicrophysics = "0.15.0" Colors = "0.12" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index bdf4c8ed25e..fb798e76c89 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -57,9 +57,9 @@ version = "0.1.33" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.1" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -142,9 +142,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "06a2a94d5a4979c36cc7a3c28d70800f448ae5bb" +git-tree-sha1 = "b7d2ca2461eeee5828ee9dcf6186e41fe6b6f78b" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.3.0" +version = "1.3.1" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -178,9 +178,9 @@ version = "0.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "54cd829dd26330c42e1cf9df68470dd4df602c61" +git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.38" +version = "0.16.39" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -270,9 +270,9 @@ version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"] -git-tree-sha1 = "d717da52954a5c2a5f804dbf0a48d13f110d16d1" +git-tree-sha1 = "43208b8137d752e4410ccd7305a69d09d88743ec" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.4" +version = "0.11.5" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -448,9 +448,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "b983d7e2b869375c74b1197fb65209b6f528d28f" +git-tree-sha1 = "4aff905c723e3f883064f00a4ba553b29372ce57" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.141.1" +version = "6.142.0" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -577,9 +577,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -600,9 +600,9 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f" +git-tree-sha1 = "8ef0363cffeedb7e73339b664ce6d33cc278a3c4" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.0" +version = "1.0.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] @@ -880,9 +880,9 @@ weakdeps = ["EnzymeCore"] [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.4" +version = "0.9.5" [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] @@ -994,10 +994,14 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "a58ab1d18efa0bcf9f0868c6d387e4126dad3e72" +deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "58e2ca62646a62e18f86253b9c2a2d821c2d934b" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.5.2" +version = "2.6.0" +weakdeps = ["ChainRulesCore"] + + [deps.LinearOperators.extensions] + LinearOperatorsChainRulesCoreExt = "ChainRulesCore" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1019,10 +1023,10 @@ version = "0.3.26" uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1040,9 +1044,9 @@ version = "0.20.19" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" +git-tree-sha1 = "2ee75365ca243c1a39d467e35ffd3d4d32eef11e" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.1.2+0" +version = "4.1.2+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1418,9 +1422,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d432b4c4cc922fb7b21b555c138aa87f9fb7beb8" +git-tree-sha1 = "32ea825941f7b58a6f48268f4b76971ae8eb9eec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.9.1" +version = "2.10.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" diff --git a/examples/Manifest.toml b/examples/Manifest.toml index e1aa69c1e2c..a822e242426 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -184,9 +184,9 @@ version = "0.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "54cd829dd26330c42e1cf9df68470dd4df602c61" +git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.38" +version = "0.16.39" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -315,11 +315,9 @@ version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"] -git-tree-sha1 = "7e08985b42cc18ba058845cfa1a2d082d25fe0cd" -repo-rev = "sb/buffer-pair2" -repo-url = "https://github.com/CliMA/ClimaCore.jl.git" +git-tree-sha1 = "43208b8137d752e4410ccd7305a69d09d88743ec" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.4" +version = "0.11.5" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -567,9 +565,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "b983d7e2b869375c74b1197fb65209b6f528d28f" +git-tree-sha1 = "4aff905c723e3f883064f00a4ba553b29372ce57" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.141.1" +version = "6.142.0" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -739,10 +737,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" +version = "4.4.2+2" [[deps.FFTViews]] deps = ["CustomUnitRanges", "FFTW"] @@ -752,9 +750,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -775,9 +773,9 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f" +git-tree-sha1 = "8ef0363cffeedb7e73339b664ce6d33cc278a3c4" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.0" +version = "1.0.1" [[deps.FastRounding]] deps = ["ErrorfreeArithmetic", "LinearAlgebra"] @@ -1005,10 +1003,10 @@ weakdeps = ["MPI"] MPIExt = "MPI" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" +deps = ["Artifacts", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenSSL_jll", "Pkg", "Zlib_jll"] +git-tree-sha1 = "4cc2bb72df6ff40b055295fdef6d92955f9dede8" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.2+1" +version = "1.12.2+2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -1092,10 +1090,10 @@ uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" version = "0.1.2" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -1221,9 +1219,9 @@ version = "0.6.7" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.4" +version = "0.9.5" [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] @@ -1416,10 +1414,14 @@ uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88" version = "0.2.5" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "a58ab1d18efa0bcf9f0868c6d387e4126dad3e72" +deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "58e2ca62646a62e18f86253b9c2a2d821c2d934b" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.5.2" +version = "2.6.0" +weakdeps = ["ChainRulesCore"] + + [deps.LinearOperators.extensions] + LinearOperatorsChainRulesCoreExt = "ChainRulesCore" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1453,10 +1455,10 @@ uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" version = "2.3.2" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1474,9 +1476,9 @@ version = "0.20.19" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" +git-tree-sha1 = "2ee75365ca243c1a39d467e35ffd3d4d32eef11e" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.1.2+0" +version = "4.1.2+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1633,10 +1635,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" [[deps.NetCDF_jll]] -deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1" +deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "072f8371f74c3b9e1b26679de7fbf059d45ea221" uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" -version = "400.902.208+0" +version = "400.902.5+1" [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] @@ -1695,9 +1697,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" +git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.12+0" +version = "1.1.23+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1940,9 +1942,9 @@ version = "0.1.4" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" +version = "6.5.2+2" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -2100,9 +2102,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d432b4c4cc922fb7b21b555c138aa87f9fb7beb8" +git-tree-sha1 = "32ea825941f7b58a6f48268f4b76971ae8eb9eec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.9.1" +version = "2.10.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2241,9 +2243,9 @@ weakdeps = ["ChainRulesCore"] [[deps.StableHashTraits]] deps = ["Compat", "SHA", "Tables", "TupleTools"] -git-tree-sha1 = "fac89469860b22e1d710a711852397821ab313f3" +git-tree-sha1 = "5a26dfe46e2cb5f5eca78114c7d49548b9597e71" uuid = "c5dd0088-6c3f-4803-b00e-f31a60c170fa" -version = "1.1.2" +version = "1.1.3" [[deps.StackViews]] deps = ["OffsetArrays"] @@ -2389,10 +2391,10 @@ weakdeps = ["IntervalArithmetic"] TaylorSeriesIAExt = "IntervalArithmetic" [[deps.TempestRemap_jll]] -deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll"] -git-tree-sha1 = "723112218783928a20e0d865932694acfb7a7571" +deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll", "Pkg"] +git-tree-sha1 = "88c3818a492ad1a94b1aa440b01eab5d133209ff" uuid = "8573a8c5-1df0-515e-a024-abad257ee284" -version = "2.2.0+0" +version = "2.1.6+1" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -2759,12 +2761,6 @@ git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c" uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4" version = "0.2.3+0" -[[deps.libaec_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "eddd19a8dea6b139ea97bdc8a0e2667d4b661720" -uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" -version = "1.0.6+1" - [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" diff --git a/perf/Manifest.toml b/perf/Manifest.toml index da05ebd81a4..1111fadab50 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -57,9 +57,9 @@ version = "0.1.33" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.1" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -160,9 +160,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "06a2a94d5a4979c36cc7a3c28d70800f448ae5bb" +git-tree-sha1 = "b7d2ca2461eeee5828ee9dcf6186e41fe6b6f78b" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.3.0" +version = "1.3.1" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -190,9 +190,9 @@ version = "0.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "54cd829dd26330c42e1cf9df68470dd4df602c61" +git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.38" +version = "0.16.39" [[deps.BufferedStreams]] git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec" @@ -326,9 +326,9 @@ version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"] -git-tree-sha1 = "d717da52954a5c2a5f804dbf0a48d13f110d16d1" +git-tree-sha1 = "43208b8137d752e4410ccd7305a69d09d88743ec" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.4" +version = "0.11.5" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -582,9 +582,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "b983d7e2b869375c74b1197fb65209b6f528d28f" +git-tree-sha1 = "4aff905c723e3f883064f00a4ba553b29372ce57" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.141.1" +version = "6.142.0" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -667,9 +667,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" +git-tree-sha1 = "9242eec9b7e2e14f9952e8ea1c7e31a50501d587" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.103" +version = "0.25.104" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -779,9 +779,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -802,9 +802,9 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f" +git-tree-sha1 = "8ef0363cffeedb7e73339b664ce6d33cc278a3c4" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.0" +version = "1.0.1" [[deps.FastRounding]] deps = ["ErrorfreeArithmetic", "LinearAlgebra"] @@ -1249,9 +1249,9 @@ uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" [[deps.JuliaSyntax]] -git-tree-sha1 = "1a4857ab55396b2da745f07f76ce4e696207b740" +git-tree-sha1 = "e00e2b013f3bd98d3789f889b9305c1546ecd1ab" uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4" -version = "0.4.7" +version = "0.4.8" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] @@ -1271,9 +1271,9 @@ version = "0.6.7" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.4" +version = "0.9.5" [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] @@ -1472,10 +1472,14 @@ uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88" version = "0.2.5" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "a58ab1d18efa0bcf9f0868c6d387e4126dad3e72" +deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "58e2ca62646a62e18f86253b9c2a2d821c2d934b" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.5.2" +version = "2.6.0" +weakdeps = ["ChainRulesCore"] + + [deps.LinearOperators.extensions] + LinearOperatorsChainRulesCoreExt = "ChainRulesCore" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1509,10 +1513,10 @@ uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" version = "2.3.2" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1530,9 +1534,9 @@ version = "0.20.19" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" +git-tree-sha1 = "2ee75365ca243c1a39d467e35ffd3d4d32eef11e" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.1.2+0" +version = "4.1.2+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1779,9 +1783,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "4e5be6bb265d33669f98eb55d2a57addd1eeb72c" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.30" +version = "0.11.31" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] @@ -2180,9 +2184,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d432b4c4cc922fb7b21b555c138aa87f9fb7beb8" +git-tree-sha1 = "32ea825941f7b58a6f48268f4b76971ae8eb9eec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.9.1" +version = "2.10.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2333,9 +2337,9 @@ weakdeps = ["ChainRulesCore"] [[deps.StableHashTraits]] deps = ["Compat", "SHA", "Tables", "TupleTools"] -git-tree-sha1 = "fac89469860b22e1d710a711852397821ab313f3" +git-tree-sha1 = "5a26dfe46e2cb5f5eca78114c7d49548b9597e71" uuid = "c5dd0088-6c3f-4803-b00e-f31a60c170fa" -version = "1.1.2" +version = "1.1.3" [[deps.StackViews]] deps = ["OffsetArrays"]