From 068e59202001c148d78a650170a4ba1748c7fa13 Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Fri, 26 Jan 2024 10:42:21 -0500 Subject: [PATCH 1/2] Update compats Update deps --- Project.toml | 6 +- docs/Manifest.toml | 133 +++++++++++++++++++-------- examples/Manifest.toml | 190 +++++++++++++++++++++++++------------- examples/Project.toml | 6 +- perf/Manifest.toml | 202 +++++++++++++++++++++++++++-------------- perf/Project.toml | 10 +- test/Project.toml | 8 +- 7 files changed, 373 insertions(+), 182 deletions(-) diff --git a/Project.toml b/Project.toml index 41a28fab32..432c928483 100644 --- a/Project.toml +++ b/Project.toml @@ -46,7 +46,7 @@ ArgParse = "1" ArtifactWrappers = "0.2" Artifacts = "1" AtmosphericProfilesLibrary = "0.1" -CLIMAParameters = "0.8.1" +CLIMAParameters = "0.8.4" CPUSummary = "0.2" ClimaComms = "0.5.6" ClimaCore = "0.11.9" @@ -76,8 +76,8 @@ SciMLBase = "1, 2" StaticArrays = "1" Statistics = "1" StatsBase = "0.33, 0.34" -SurfaceFluxes = "0.9.0" -Thermodynamics = "0.11.3" +SurfaceFluxes = "0.9.1" +Thermodynamics = "0.11" YAML = "0.4" julia = "1.7" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 3503505206..b3597d4b77 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -163,6 +163,12 @@ git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" version = "0.16.39" +[[deps.Blosc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "19b98ee7e3db3b4eff74c5c9c72bf32144e24f10" +uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" +version = "1.21.5+0" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" @@ -182,9 +188,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "a085251dfe4b0f732fe2b65d5354e6af91a8e931" +git-tree-sha1 = "ccfac72eed3ccf27ad086564059cab9d64567c7d" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.7.26" +version = "0.8.5" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -211,9 +217,9 @@ version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536" +git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.2" +version = "0.2.3" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -223,9 +229,9 @@ version = "0.10.1+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" +git-tree-sha1 = "1287e3872d646eed95198457873249bd9f0caed2" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.19.1" +version = "1.20.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -245,9 +251,9 @@ version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" +git-tree-sha1 = "541bf25a8adc3c7ddf8d45a96149964f5cfbb074" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.8" +version = "0.11.9" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -267,9 +273,9 @@ version = "0.1.12" [[deps.CloudMicrophysics]] deps = ["CLIMAParameters", "DocStringExtensions", "ForwardDiff", "RootSolvers", "SpecialFunctions", "Thermodynamics"] -git-tree-sha1 = "a6993c57af74e2e0f2191b556178cc8d8c0df9d6" +git-tree-sha1 = "0c0be34fad945b95fd3c94cca9003bacae990ccf" uuid = "6a9e3e04-43cd-43ba-94b9-e8782df3c71b" -version = "0.15.1" +version = "0.15.2" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -285,9 +291,9 @@ version = "0.12.10" [[deps.CommonDataModel]] deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf", "Statistics"] -git-tree-sha1 = "349d9b36250ec19a7da18f838434db7d76c2f131" +git-tree-sha1 = "a132d267a055e8173a4a8e83d0d4ddcaeae70f91" uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" -version = "0.3.2" +version = "0.3.4" [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" @@ -344,9 +350,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" version = "0.2.4" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -620,6 +626,11 @@ version = "0.4.5" deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +[[deps.GMP_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" +version = "6.2.1+6" + [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" @@ -661,6 +672,12 @@ git-tree-sha1 = "b30c473c97fcc1e1e44fab8f3e88fd1b89c9e9d1" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" version = "2.43.0+0" +[[deps.GnuTLS_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Pkg", "Zlib_jll"] +git-tree-sha1 = "266fe9b2335527cbf569ba4fd0979e3d8c6fd491" +uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d" +version = "3.7.8+1" + [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" @@ -673,9 +690,9 @@ weakdeps = ["MPI"] [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" +git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+0" +version = "1.14.3+1" [[deps.IOCapture]] deps = ["Logging", "Random"] @@ -696,9 +713,13 @@ version = "1.4.0" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "2679907708edd9bbe2bd98585e575b48f17902c8" +git-tree-sha1 = "2aaf998568ab59643cefb0fc17eba42f9d5bef37" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.8.2" +version = "0.9.0" +weakdeps = ["CLIMAParameters"] + + [deps.Insolation.extensions] + CreateParametersExt = "CLIMAParameters" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -930,6 +951,12 @@ version = "0.3.26" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +[[deps.Lz4_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" +uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" +version = "1.9.4+0" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" @@ -1055,10 +1082,16 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" [[deps.NetCDF_jll]] -deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1" +deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"] +git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15" uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" -version = "400.902.208+0" +version = "400.902.209+0" + +[[deps.Nettle_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4" +uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b" +version = "3.7.2+0" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" @@ -1091,9 +1124,9 @@ version = "4.1.6+0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.12+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1106,6 +1139,12 @@ git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" +[[deps.P11Kit_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf" +uuid = "c2071276-7c44-58a7-b746-946036e04d0a" +version = "0.24.1+0" + [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" @@ -1236,14 +1275,15 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" +git-tree-sha1 = "5a904ad526cc9a2c5b464f6642ce9dd230fd69b6" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.5.4" +version = "3.7.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -1251,6 +1291,7 @@ version = "3.5.4" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1294,9 +1335,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0" +git-tree-sha1 = "e4344257d8a9dfc92e0fc113f0a5bababa8d2082" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.20.0" +version = "2.22.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1389,9 +1430,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5" +git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.1" +version = "1.9.2" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1454,15 +1495,19 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" [[deps.SurfaceFluxes]] -deps = ["CLIMAParameters", "DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "a167924897731ee57ef0197bb19357bfc2d007bc" +deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.8.1" +version = "0.9.1" +weakdeps = ["CLIMAParameters"] + + [deps.SurfaceFluxes.extensions] + CreateParametersExt = "CLIMAParameters" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" +git-tree-sha1 = "b3103f4f50a3843e66297a2456921377c78f5e31" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.3" +version = "0.3.5" [[deps.TOML]] deps = ["Dates"] @@ -1509,9 +1554,13 @@ version = "1.0.1" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] -git-tree-sha1 = "2de4b5ccc71baf3578959928c295a2fa13105db7" +git-tree-sha1 = "d3b8b0346aa5f101135fbe3cd62acaeb2074a50a" uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -version = "0.11.2" +version = "0.11.6" +weakdeps = ["CLIMAParameters"] + + [deps.Thermodynamics.extensions] + CreateParametersExt = "CLIMAParameters" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] @@ -1582,6 +1631,12 @@ git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" version = "2.12.2+0" +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.5+0" + [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] git-tree-sha1 = "e6330e4b731a6af7959673621e91645eb1356884" @@ -1610,6 +1665,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" +[[deps.libzip_jll]] +deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "9a6ac803f3c17fe7cf66430a8bfc7186800f08a4" +uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" +version = "1.9.2+0" + [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" diff --git a/examples/Manifest.toml b/examples/Manifest.toml index 068f40c3b0..f302809527 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.0" manifest_format = "2.0" -project_hash = "58caddfd3d8a4a4bd4e9b8cac20a6d8b0834a946" +project_hash = "bd2446e1b72afb3a8a28c528318b94695f03ffaa" [[deps.ADTypes]] git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" @@ -152,6 +152,12 @@ weakdeps = ["SparseArrays"] [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.BenchmarkTools]] +deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "1.4.0" + [[deps.BitFlags]] git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -169,6 +175,12 @@ git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" version = "0.16.39" +[[deps.Blosc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "19b98ee7e3db3b4eff74c5c9c72bf32144e24f10" +uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" +version = "1.21.5+0" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" @@ -188,9 +200,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "7c45e066cd04afc7e29e229045506f5a9afb8970" +git-tree-sha1 = "ccfac72eed3ccf27ad086564059cab9d64567c7d" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.8.1" +version = "0.8.5" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -232,9 +244,9 @@ version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536" +git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.2" +version = "0.2.3" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -250,9 +262,9 @@ version = "1.0.5" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "ec7c21818710774e72195bda25c70fd6c56bc005" +git-tree-sha1 = "8af8e491c0809610cdec28c9c44b1f1dce01046d" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.11.5" +version = "0.11.6" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -274,9 +286,9 @@ version = "0.2.2" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" +git-tree-sha1 = "1287e3872d646eed95198457873249bd9f0caed2" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.19.1" +version = "1.20.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -368,11 +380,17 @@ git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" version = "1.3.5" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] +git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.2" + [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.3" +version = "0.7.4" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -415,9 +433,9 @@ version = "1.0.2" [[deps.CommonDataModel]] deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf", "Statistics"] -git-tree-sha1 = "349d9b36250ec19a7da18f838434db7d76c2f131" +git-tree-sha1 = "a132d267a055e8173a4a8e83d0d4ddcaeae70f91" uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" -version = "0.3.2" +version = "0.3.4" [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" @@ -495,9 +513,9 @@ uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce" version = "1.0.2" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -895,6 +913,11 @@ git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.3.9+0" +[[deps.GMP_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" +version = "6.2.1+6" + [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" @@ -915,15 +938,15 @@ version = "0.25.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -939,9 +962,9 @@ version = "1.3.3" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "424a5a6ce7c5d97cca7bcc4eac551b97294c54af" +git-tree-sha1 = "5694b56ccf9d15addedc35e9a4ba9c317721b788" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.9" +version = "0.4.10" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -965,6 +988,12 @@ git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" version = "1.3.1" +[[deps.GnuTLS_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Pkg", "Zlib_jll"] +git-tree-sha1 = "266fe9b2335527cbf569ba4fd0979e3d8c6fd491" +uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d" +version = "3.7.8+1" + [[deps.Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] git-tree-sha1 = "d61890399bc535850c4bf08e4e0d3a7ad0f21cbd" @@ -1000,9 +1029,9 @@ weakdeps = ["MPI"] [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" +git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+0" +version = "1.14.3+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -1040,10 +1069,10 @@ uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.7" [[deps.ImageCore]] -deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] -git-tree-sha1 = "fc5d1d3443a124fde6e92d0260cd9e064eba69f8" +deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] +git-tree-sha1 = "b2a7eaa169c13f5bcae8131a83bc30eff8f71be0" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" -version = "0.10.1" +version = "0.10.2" [[deps.ImageFiltering]] deps = ["CatIndices", "ComputationalResources", "DataStructures", "FFTViews", "FFTW", "ImageBase", "ImageCore", "LinearAlgebra", "OffsetArrays", "PrecompileTools", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "TiledIteration"] @@ -1164,9 +1193,9 @@ version = "1.0.0" [[deps.JET]] deps = ["InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Revise", "Test"] -git-tree-sha1 = "5a271ff6f12b34cf173c97bb8a6cdd8db6aa3f96" +git-tree-sha1 = "f637cfb8cbfc48c3241db5cf11d150b10686acd1" uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" -version = "0.8.25" +version = "0.8.27" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] @@ -1479,6 +1508,12 @@ git-tree-sha1 = "0b8cf121228f7dae022700c1c11ac1f04122f384" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" version = "2.3.2" +[[deps.Lz4_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" +uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" +version = "1.9.4+0" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" @@ -1524,16 +1559,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "a37c6610dd20425b131caf65d52abdf859da5ab1" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] +git-tree-sha1 = "5458e49833d178c071dd6ab6938ac5320f37bc98" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.20.4" +version = "0.20.5" [[deps.MakieCore]] deps = ["Observables", "REPL"] -git-tree-sha1 = "ec5db7bb2dc9b85072658dcb2d3ad09569b09ac9" +git-tree-sha1 = "248b7a4be0f92b497f7a331aed02c1e9a878f46b" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.7.2" +version = "0.7.3" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1549,6 +1584,12 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "8b40681684df46785a0012d352982e22ac3be59e" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.25.2" + [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" @@ -1611,6 +1652,12 @@ git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" version = "0.4.4" +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.4.0" + [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] git-tree-sha1 = "4704758e7dd9c843f0a99b18a26aa2d88dd8b8e6" @@ -1654,10 +1701,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" [[deps.NetCDF_jll]] -deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1" +deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"] +git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15" uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" -version = "400.902.208+0" +version = "400.902.209+0" [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] @@ -1665,6 +1712,12 @@ git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd" uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" version = "1.1.1" +[[deps.Nettle_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4" +uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b" +version = "3.7.2+0" + [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" @@ -1737,9 +1790,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.12+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1748,10 +1801,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "47fea72de134f75b105a5d4a1abe5c6aec89d390" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.8" +version = "1.9.1" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1764,6 +1817,12 @@ git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" +[[deps.P11Kit_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf" +uuid = "c2071276-7c44-58a7-b746-946036e04d0a" +version = "0.24.1+0" + [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" @@ -1858,10 +1917,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "38a748946dca52a622e79eea6ed35c6737499109" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.0" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1905,6 +1964,7 @@ deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "4.0.6" +weakdeps = ["ChainRulesCore", "FFTW", "MakieCore", "MutableArithmetics"] [deps.Polynomials.extensions] PolynomialsChainRulesCoreExt = "ChainRulesCore" @@ -1912,12 +1972,6 @@ version = "4.0.6" PolynomialsMakieCoreExt = "MakieCore" PolynomialsMutableArithmeticsExt = "MutableArithmetics" - [deps.Polynomials.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" - MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" - MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -2071,14 +2125,15 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" +git-tree-sha1 = "5a904ad526cc9a2c5b464f6642ce9dd230fd69b6" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.5.4" +version = "3.7.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2086,6 +2141,7 @@ version = "3.5.4" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2158,9 +2214,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0" +git-tree-sha1 = "e4344257d8a9dfc92e0fc113f0a5bababa8d2082" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.20.0" +version = "2.22.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2213,9 +2269,9 @@ version = "1.1.1" [[deps.ShaderAbstractions]] deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "db0219befe4507878b1a90e07820fed3e62c289d" +git-tree-sha1 = "79123bc60c5507f035e6d1d9e563bb2971954ec8" uuid = "65257c39-d410-5151-9873-9b3e5be5013e" -version = "0.4.0" +version = "0.4.1" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] @@ -2329,9 +2385,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5" +git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.1" +version = "1.9.2" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2409,18 +2465,18 @@ version = "7.2.1+1" [[deps.SurfaceFluxes]] deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "261f66ff71cacf70c789e0289023bb6998c59eb9" +git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.9.0" +version = "0.9.1" weakdeps = ["CLIMAParameters"] [deps.SurfaceFluxes.extensions] CreateParametersExt = "CLIMAParameters" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" +git-tree-sha1 = "b3103f4f50a3843e66297a2456921377c78f5e31" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.3" +version = "0.3.5" [[deps.TOML]] deps = ["Dates"] @@ -2477,9 +2533,9 @@ version = "1.0.1" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] -git-tree-sha1 = "b5e7511029d6aa08d049301f02c34a43a8ebfb95" +git-tree-sha1 = "d3b8b0346aa5f101135fbe3cd62acaeb2074a50a" uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -version = "0.11.3" +version = "0.11.6" weakdeps = ["CLIMAParameters"] [deps.Thermodynamics.extensions] @@ -2898,6 +2954,12 @@ git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+1" +[[deps.libzip_jll]] +deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "9a6ac803f3c17fe7cf66430a8bfc7186800f08a4" +uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" +version = "1.9.2+0" + [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" diff --git a/examples/Project.toml b/examples/Project.toml index 5e91cf91f6..65896a2c1b 100644 --- a/examples/Project.toml +++ b/examples/Project.toml @@ -73,16 +73,16 @@ ClimaCorePlots = "0.2" ClimaCoreSpectra = "0.1" ClimaCoreTempestRemap = "0.3" ClimaCoreVTK = "0.7" -CloudMicrophysics = "0.15" +CloudMicrophysics = "0.15.2" ForwardDiff = "0.10" Glob = "1" JET = "0.7, 0.8" JSON = "0.21" NCRegressionTests = "0.2" -OrderedCollections = "1" +OrderedCollections = "1.6" Plots = "1" PoissonRandom = "0.4" -PrettyTables = "1, 2" +PrettyTables = "2" ProgressLogging = "0.1" QuadGK = "2" SciMLBase = "1, 2" diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 569ff6e7ce..0fd6a92efd 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.0" manifest_format = "2.0" -project_hash = "3c2a77c695622e90d7845846b4e4c54862493742" +project_hash = "1d8f4a8a2026ad716fd7e6ca64b9174c978e2ab8" [[deps.ADTypes]] git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" @@ -175,6 +175,12 @@ git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" version = "0.16.39" +[[deps.Blosc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "19b98ee7e3db3b4eff74c5c9c72bf32144e24f10" +uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" +version = "1.21.5+0" + [[deps.BufferedStreams]] git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec" uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d" @@ -199,9 +205,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "7c45e066cd04afc7e29e229045506f5a9afb8970" +git-tree-sha1 = "ccfac72eed3ccf27ad086564059cab9d64567c7d" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.8.1" +version = "0.8.5" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -243,9 +249,9 @@ version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536" +git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.2" +version = "0.2.3" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -260,10 +266,10 @@ uuid = "159f3aea-2a34-519c-b102-8c37f9878175" version = "1.0.5" [[deps.CairoMakie]] -deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools", "SHA"] -git-tree-sha1 = "5e21a254d82c64b1a4ed9dbdc7e87c5d9cf4a686" +deps = ["CRC32c", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] +git-tree-sha1 = "8af8e491c0809610cdec28c9c44b1f1dce01046d" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.10.12" +version = "0.11.6" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -279,9 +285,9 @@ version = "0.5.1" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" +git-tree-sha1 = "1287e3872d646eed95198457873249bd9f0caed2" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.19.1" +version = "1.20.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -289,9 +295,9 @@ weakdeps = ["SparseArrays"] [[deps.ClimaAnalysis]] deps = ["NCDatasets", "OrderedCollections", "Statistics"] -git-tree-sha1 = "b49f7ecb3b41723e880617ad9404c8bfb4bb1fd0" +git-tree-sha1 = "13af105a344bb87c6747e57ce0abc55294906fbd" uuid = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" -version = "0.2.1" +version = "0.4.1" weakdeps = ["CairoMakie"] [deps.ClimaAnalysis.extensions] @@ -373,11 +379,17 @@ git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" version = "1.3.5" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] +git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.2" + [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.3" +version = "0.7.4" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -420,9 +432,9 @@ version = "1.0.2" [[deps.CommonDataModel]] deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf", "Statistics"] -git-tree-sha1 = "349d9b36250ec19a7da18f838434db7d76c2f131" +git-tree-sha1 = "a132d267a055e8173a4a8e83d0d4ddcaeae70f91" uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" -version = "0.3.2" +version = "0.3.4" [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" @@ -780,6 +792,18 @@ git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" version = "1.16.2" +[[deps.FilePaths]] +deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"] +git-tree-sha1 = "919d9412dbf53a2e6fe74af62a73ceed0bce0629" +uuid = "8fc22ac5-c921-52a6-82fd-178b2807b824" +version = "0.8.3" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -902,6 +926,11 @@ git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.3.9+0" +[[deps.GMP_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" +version = "6.2.1+6" + [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" @@ -922,15 +951,15 @@ version = "0.25.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -946,9 +975,9 @@ version = "1.3.3" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "424a5a6ce7c5d97cca7bcc4eac551b97294c54af" +git-tree-sha1 = "5694b56ccf9d15addedc35e9a4ba9c317721b788" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.9" +version = "0.4.10" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -972,6 +1001,12 @@ git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" version = "1.3.1" +[[deps.GnuTLS_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Pkg", "Zlib_jll"] +git-tree-sha1 = "266fe9b2335527cbf569ba4fd0979e3d8c6fd491" +uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d" +version = "3.7.8+1" + [[deps.Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] git-tree-sha1 = "d61890399bc535850c4bf08e4e0d3a7ad0f21cbd" @@ -992,9 +1027,9 @@ version = "2.50.0+1" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "f57a64794b336d4990d90f80b147474b869b1bc4" +git-tree-sha1 = "af13a277efd8a6e716d79ef635d5342ccb75be61" uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.9.2" +version = "0.10.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -1013,9 +1048,9 @@ weakdeps = ["MPI"] [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" +git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+0" +version = "1.14.3+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -1053,10 +1088,10 @@ uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.7" [[deps.ImageCore]] -deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] -git-tree-sha1 = "fc5d1d3443a124fde6e92d0260cd9e064eba69f8" +deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] +git-tree-sha1 = "b2a7eaa169c13f5bcae8131a83bc30eff8f71be0" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" -version = "0.10.1" +version = "0.10.2" [[deps.ImageIO]] deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"] @@ -1171,9 +1206,9 @@ version = "1.0.0" [[deps.JET]] deps = ["InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Revise", "Test"] -git-tree-sha1 = "5a271ff6f12b34cf173c97bb8a6cdd8db6aa3f96" +git-tree-sha1 = "f637cfb8cbfc48c3241db5cf11d150b10686acd1" uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" -version = "0.8.25" +version = "0.8.27" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] @@ -1497,6 +1532,12 @@ git-tree-sha1 = "0b8cf121228f7dae022700c1c11ac1f04122f384" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" version = "2.3.2" +[[deps.Lz4_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" +uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" +version = "1.9.4+0" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" @@ -1542,16 +1583,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "35fa3c150cd96fd77417a23965b7037b90d6ffc9" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] +git-tree-sha1 = "5458e49833d178c071dd6ab6938ac5320f37bc98" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.19.12" +version = "0.20.5" [[deps.MakieCore]] deps = ["Observables", "REPL"] -git-tree-sha1 = "9b11acd07f21c4d035bd4156e789532e8ee2cc70" +git-tree-sha1 = "248b7a4be0f92b497f7a331aed02c1e9a878f46b" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.6.9" +version = "0.7.3" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1567,6 +1608,12 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "8b40681684df46785a0012d352982e22ac3be59e" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.25.2" + [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" @@ -1629,6 +1676,12 @@ git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" version = "0.4.4" +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.4.0" + [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] git-tree-sha1 = "4704758e7dd9c843f0a99b18a26aa2d88dd8b8e6" @@ -1666,10 +1719,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" [[deps.NetCDF_jll]] -deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1" +deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"] +git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15" uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" -version = "400.902.208+0" +version = "400.902.209+0" [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] @@ -1677,6 +1730,12 @@ git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd" uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" version = "1.1.1" +[[deps.Nettle_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4" +uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b" +version = "3.7.2+0" + [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" @@ -1749,9 +1808,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.12+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1760,10 +1819,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "47fea72de134f75b105a5d4a1abe5c6aec89d390" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.8" +version = "1.9.1" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1776,6 +1835,12 @@ git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" +[[deps.P11Kit_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf" +uuid = "c2071276-7c44-58a7-b746-946036e04d0a" +version = "0.24.1+0" + [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" @@ -1876,10 +1941,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "38a748946dca52a622e79eea6ed35c6737499109" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.0" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1923,6 +1988,7 @@ deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "4.0.6" +weakdeps = ["ChainRulesCore", "FFTW", "MakieCore", "MutableArithmetics"] [deps.Polynomials.extensions] PolynomialsChainRulesCoreExt = "ChainRulesCore" @@ -1930,12 +1996,6 @@ version = "4.0.6" PolynomialsMakieCoreExt = "MakieCore" PolynomialsMutableArithmeticsExt = "MutableArithmetics" - [deps.Polynomials.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" - MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" - MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -2101,14 +2161,15 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" +git-tree-sha1 = "5a904ad526cc9a2c5b464f6642ce9dd230fd69b6" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.5.4" +version = "3.7.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2116,6 +2177,7 @@ version = "3.5.4" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2194,9 +2256,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0" +git-tree-sha1 = "e4344257d8a9dfc92e0fc113f0a5bababa8d2082" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.20.0" +version = "2.22.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2249,9 +2311,9 @@ version = "1.1.1" [[deps.ShaderAbstractions]] deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "db0219befe4507878b1a90e07820fed3e62c289d" +git-tree-sha1 = "79123bc60c5507f035e6d1d9e563bb2971954ec8" uuid = "65257c39-d410-5151-9873-9b3e5be5013e" -version = "0.4.0" +version = "0.4.1" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] @@ -2377,9 +2439,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5" +git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.1" +version = "1.9.2" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2457,18 +2519,18 @@ version = "7.2.1+1" [[deps.SurfaceFluxes]] deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "261f66ff71cacf70c789e0289023bb6998c59eb9" +git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.9.0" +version = "0.9.1" weakdeps = ["CLIMAParameters"] [deps.SurfaceFluxes.extensions] CreateParametersExt = "CLIMAParameters" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" +git-tree-sha1 = "b3103f4f50a3843e66297a2456921377c78f5e31" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.3" +version = "0.3.5" [[deps.TOML]] deps = ["Dates"] @@ -2525,9 +2587,9 @@ version = "1.0.1" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] -git-tree-sha1 = "b5e7511029d6aa08d049301f02c34a43a8ebfb95" +git-tree-sha1 = "d3b8b0346aa5f101135fbe3cd62acaeb2074a50a" uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -version = "0.11.3" +version = "0.11.6" weakdeps = ["CLIMAParameters"] [deps.Thermodynamics.extensions] @@ -2952,6 +3014,12 @@ git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+1" +[[deps.libzip_jll]] +deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "9a6ac803f3c17fe7cf66430a8bfc7186800f08a4" +uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" +version = "1.9.2+0" + [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" diff --git a/perf/Project.toml b/perf/Project.toml index 5e96b6c299..d7982fe2bc 100644 --- a/perf/Project.toml +++ b/perf/Project.toml @@ -72,23 +72,23 @@ YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" [compat] BenchmarkTools = "1" BlockArrays = "0.16" -CairoMakie = "0.10" -ClimaCoreMakie = "0.4" +CairoMakie = "0.10, 0.11" +ClimaCoreMakie = "0.3, 0.4" ClimaCorePlots = "0.2" ClimaCoreSpectra = "0.1" ClimaCoreTempestRemap = "0.3" ClimaCoreVTK = "0.7" -CloudMicrophysics = "0.15" +CloudMicrophysics = "0.15.2" DiffEqNoiseProcess = "5" ForwardDiff = "0.10" Glob = "1" JET = "0.7, 0.8" JSON = "0.21" -OrderedCollections = "1" +OrderedCollections = "1.6" PProf = "2" Plots = "1" PoissonRandom = "0.4" -PrettyTables = "1, 2" +PrettyTables = "2" ProfileCanvas = "0.1" ProgressLogging = "0.1" QuadGK = "2" diff --git a/test/Project.toml b/test/Project.toml index 0040e94459..655a00145f 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -66,8 +66,8 @@ YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" [compat] Aqua = "0.8" BlockArrays = "0.16" -CairoMakie = "0.10" -ClimaCoreMakie = "0.4" +CairoMakie = "0.10, 0.11" +ClimaCoreMakie = "0.3, 0.4" ClimaCorePlots = "0.2" ClimaCoreSpectra = "0.1" ClimaCoreTempestRemap = "0.3" @@ -79,10 +79,10 @@ ForwardDiff = "0.10" Glob = "1" JSON = "0.21" NCRegressionTests = "0.2" -OrderedCollections = "1" +OrderedCollections = "1.6" Plots = "1" PoissonRandom = "0.4" -PrettyTables = "1, 2" +PrettyTables = "2" ProgressLogging = "0.1" QuadGK = "2" SafeTestsets = "0.1" From d1cadb67cba6ff9dd66c919a983fa5275065b3ad Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Wed, 31 Jan 2024 15:57:00 -0500 Subject: [PATCH 2/2] Bump ref counter --- regression_tests/ref_counter.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/regression_tests/ref_counter.jl b/regression_tests/ref_counter.jl index 878d5a02b2..c748b568f7 100644 --- a/regression_tests/ref_counter.jl +++ b/regression_tests/ref_counter.jl @@ -1 +1 @@ -146 +147