Merge pull request #1710 from CliMA/ck/up_deps

Update dependencies
CliMA · May 25, 2023 · e38923e · e38923e
2 parents 65719f8 + 15355f4
commit e38923e
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diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -166,9 +166,9 @@ version = "0.2.2"
 
 [[deps.CUDA]]
 deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "280893f920654ebfaaaa1999fbd975689051f890"
+git-tree-sha1 = "beb01266a709235d8d9be1382d695a25f0b75bd3"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "4.2.0"
+version = "4.3.0"
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
@@ -216,7 +216,7 @@ version = "0.1.7"
 deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "CUDA", "ClimaComms", "ClimaCore", "ClimaCorePlots", "ClimaCoreVTK", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "JLD2", "Krylov", "LambertW", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "OrdinaryDiffEq", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "TerminalLoggers", "Test", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.14.0"
+version = "0.14.1"
 
 [[deps.ClimaComms]]
 deps = ["CUDA", "MPI"]
@@ -226,9 +226,9 @@ version = "0.4.2"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "Rotations", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
-git-tree-sha1 = "c7e098ccee6a24e31edddf6d3eb3c867da8d1a1a"
+git-tree-sha1 = "9ef8838ca6cab5c79c090854c7159f3aee09d433"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.35"
+version = "0.10.36"
 
 [[deps.ClimaCorePlots]]
 deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"]
@@ -535,9 +535,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "fa10570aee20250d446c9951b459c63529b1107c"
+git-tree-sha1 = "ed569cb9e7e3590d5ba884da7edc50216aac5811"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.0.2"
+version = "1.1.0"
 
 [[deps.FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
@@ -592,9 +592,9 @@ version = "0.1.4"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "5737dc242dadd392d934ee330c69ceff47f0259c"
+git-tree-sha1 = "11b2d77f29a85f3649c273a38f6618121c6b1c51"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.19.4"
+version = "0.20.2"
 
 [[deps.GaussQuadrature]]
 deps = ["SpecialFunctions"]
@@ -1339,9 +1339,9 @@ version = "0.1.6"
 
 [[deps.SciMLOperators]]
 deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"]
-git-tree-sha1 = "90163ebc767cba9f126ea00aeef1d75ed74fe7b0"
+git-tree-sha1 = "d9f0f6ce9bb899a657c4d218a846533910e9dea9"
 uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
-version = "0.2.8"
+version = "0.2.9"
 
 [[deps.Scratch]]
 deps = ["Dates"]

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -171,9 +171,9 @@ uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc"
 
 [[deps.CUDA]]
 deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "280893f920654ebfaaaa1999fbd975689051f890"
+git-tree-sha1 = "beb01266a709235d8d9be1382d695a25f0b75bd3"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "4.2.0"
+version = "4.3.0"
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
@@ -239,7 +239,7 @@ version = "0.1.7"
 deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "CUDA", "ClimaComms", "ClimaCore", "ClimaCorePlots", "ClimaCoreVTK", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "JLD2", "Krylov", "LambertW", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "OrdinaryDiffEq", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "TerminalLoggers", "Test", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.14.0"
+version = "0.14.1"
 
 [[deps.ClimaComms]]
 deps = ["CUDA", "MPI"]
@@ -249,9 +249,9 @@ version = "0.4.2"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "Rotations", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
-git-tree-sha1 = "c7e098ccee6a24e31edddf6d3eb3c867da8d1a1a"
+git-tree-sha1 = "9ef8838ca6cab5c79c090854c7159f3aee09d433"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.35"
+version = "0.10.36"
 
 [[deps.ClimaCoreMakie]]
 deps = ["ClimaCore", "Makie"]
@@ -633,9 +633,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "fa10570aee20250d446c9951b459c63529b1107c"
+git-tree-sha1 = "ed569cb9e7e3590d5ba884da7edc50216aac5811"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.0.2"
+version = "1.1.0"
 
 [[deps.FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
@@ -738,21 +738,21 @@ version = "0.1.4"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "5737dc242dadd392d934ee330c69ceff47f0259c"
+git-tree-sha1 = "11b2d77f29a85f3649c273a38f6618121c6b1c51"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.19.4"
+version = "0.20.2"
 
 [[deps.GR]]
 deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
-git-tree-sha1 = "d014972cd6f5afb1f8cd7adf000b7a966d62c304"
+git-tree-sha1 = "3eeb026e99c84517c35d0309468a63df712d8460"
 uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
-version = "0.72.5"
+version = "0.72.6"
 
 [[deps.GR_jll]]
 deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "f670f269909a9114df1380cc0fcaa316fff655fb"
+git-tree-sha1 = "55297beef80a236708e6a54b134d07fde213cd1b"
 uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
-version = "0.72.5+0"
+version = "0.72.6+0"
 
 [[deps.GaussQuadrature]]
 deps = ["SpecialFunctions"]
@@ -1038,9 +1038,9 @@ uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e"
 version = "0.2.1+0"
 
 [[deps.JuliaSyntax]]
-git-tree-sha1 = "3884259b6852ed89c7036c455551a556d8a3a124"
+git-tree-sha1 = "3379908bd15b3ae86b24de22efbb1e6813864078"
 uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4"
-version = "0.4.1"
+version = "0.4.3"
 
 [[deps.KLU]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
@@ -1914,9 +1914,9 @@ version = "0.1.6"
 
 [[deps.SciMLOperators]]
 deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"]
-git-tree-sha1 = "90163ebc767cba9f126ea00aeef1d75ed74fe7b0"
+git-tree-sha1 = "d9f0f6ce9bb899a657c4d218a846533910e9dea9"
 uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
-version = "0.2.8"
+version = "0.2.9"
 
 [[deps.Scratch]]
 deps = ["Dates"]

diff --git a/perf/Manifest.toml b/perf/Manifest.toml
@@ -182,9 +182,9 @@ uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc"
 
 [[deps.CUDA]]
 deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "280893f920654ebfaaaa1999fbd975689051f890"
+git-tree-sha1 = "beb01266a709235d8d9be1382d695a25f0b75bd3"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "4.2.0"
+version = "4.3.0"
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
@@ -250,7 +250,7 @@ version = "0.1.7"
 deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "CUDA", "ClimaComms", "ClimaCore", "ClimaCorePlots", "ClimaCoreVTK", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "JLD2", "Krylov", "LambertW", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "OrdinaryDiffEq", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "TerminalLoggers", "Test", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.14.0"
+version = "0.14.1"
 
 [[deps.ClimaComms]]
 deps = ["CUDA", "MPI"]
@@ -260,9 +260,9 @@ version = "0.4.2"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "Rotations", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
-git-tree-sha1 = "c7e098ccee6a24e31edddf6d3eb3c867da8d1a1a"
+git-tree-sha1 = "9ef8838ca6cab5c79c090854c7159f3aee09d433"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.35"
+version = "0.10.36"
 
 [[deps.ClimaCoreMakie]]
 deps = ["ClimaCore", "Makie"]
@@ -650,9 +650,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "fa10570aee20250d446c9951b459c63529b1107c"
+git-tree-sha1 = "ed569cb9e7e3590d5ba884da7edc50216aac5811"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.0.2"
+version = "1.1.0"
 
 [[deps.FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
@@ -755,21 +755,21 @@ version = "0.1.4"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "5737dc242dadd392d934ee330c69ceff47f0259c"
+git-tree-sha1 = "11b2d77f29a85f3649c273a38f6618121c6b1c51"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.19.4"
+version = "0.20.2"
 
 [[deps.GR]]
 deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
-git-tree-sha1 = "d014972cd6f5afb1f8cd7adf000b7a966d62c304"
+git-tree-sha1 = "3eeb026e99c84517c35d0309468a63df712d8460"
 uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
-version = "0.72.5"
+version = "0.72.6"
 
 [[deps.GR_jll]]
 deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "f670f269909a9114df1380cc0fcaa316fff655fb"
+git-tree-sha1 = "55297beef80a236708e6a54b134d07fde213cd1b"
 uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
-version = "0.72.5+0"
+version = "0.72.6+0"
 
 [[deps.GaussQuadrature]]
 deps = ["SpecialFunctions"]
@@ -1061,9 +1061,9 @@ uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e"
 version = "0.2.1+0"
 
 [[deps.JuliaSyntax]]
-git-tree-sha1 = "3884259b6852ed89c7036c455551a556d8a3a124"
+git-tree-sha1 = "3379908bd15b3ae86b24de22efbb1e6813864078"
 uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4"
-version = "0.4.1"
+version = "0.4.3"
 
 [[deps.KLU]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
@@ -1967,9 +1967,9 @@ version = "0.1.6"
 
 [[deps.SciMLOperators]]
 deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"]
-git-tree-sha1 = "90163ebc767cba9f126ea00aeef1d75ed74fe7b0"
+git-tree-sha1 = "d9f0f6ce9bb899a657c4d218a846533910e9dea9"
 uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
-version = "0.2.8"
+version = "0.2.9"
 
 [[deps.Scratch]]
 deps = ["Dates"]