diff --git a/Project.toml b/Project.toml index e1e8b090..b67dd29d 100644 --- a/Project.toml +++ b/Project.toml @@ -5,7 +5,6 @@ version = "0.1.0" [deps] CalibrateEmulateSample = "95e48a1f-0bec-4818-9538-3db4340308e3" -ClimaAtmos = "b2c96348-7fb7-4fe0-8da9-78d88439e717" ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" @@ -19,7 +18,6 @@ YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" [compat] CalibrateEmulateSample = "0.5" -ClimaAtmos = "0.20.0" ClimaComms = "0.5" ClimaCore = "0.11, 0.12" Distributions = "0.25" @@ -29,4 +27,4 @@ PrecompileTools = "1" Random = "1" SciMLBase = "1, 2" TOML = "1" -YAML = "0.4" +YAML = "0.4" \ No newline at end of file diff --git a/experiments/sphere_held_suarez_rhoe_equilmoist/Manifest.toml b/experiments/sphere_held_suarez_rhoe_equilmoist/Manifest.toml index f0d75441..737acee8 100644 --- a/experiments/sphere_held_suarez_rhoe_equilmoist/Manifest.toml +++ b/experiments/sphere_held_suarez_rhoe_equilmoist/Manifest.toml @@ -26,6 +26,12 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "4.4.2" + [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -41,6 +47,28 @@ weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.7.5" + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + + [deps.AdvancedMH.weakdeps] + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + [[deps.ArgParse]] deps = ["Logging", "TextWrap"] git-tree-sha1 = "d4eccacaa3a632e8717556479d45502af44b4c17" @@ -122,6 +150,12 @@ git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" version = "1.1.0" +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66" @@ -138,9 +172,34 @@ weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] BandedMatricesSparseArraysExt = "SparseArrays" +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.40" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" @@ -223,18 +282,18 @@ git-tree-sha1 = "9704e50c9158cf8896c2776b8dbc5edd136caf80" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" version = "0.10.1+0" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.CalibrateAtmos]] -deps = ["ClimaComms", "ClimaCore", "Distributions", "EnsembleKalmanProcesses", "JLD2", "LinearAlgebra", "Random", "TOML", "YAML"] +deps = ["CalibrateEmulateSample", "ClimaComms", "ClimaCore", "Distributions", "EnsembleKalmanProcesses", "JLD2", "PrecompileTools", "Random", "SciMLBase", "TOML", "YAML"] path = "../.." uuid = "4347a170-ebd6-470c-89d3-5c705c0cacc2" version = "0.1.0" +[[deps.CalibrateEmulateSample]] +deps = ["AbstractMCMC", "AdvancedMH", "Conda", "Distributions", "DocStringExtensions", "EnsembleKalmanProcesses", "GaussianProcesses", "LinearAlgebra", "MCMCChains", "Pkg", "Printf", "ProgressBars", "PyCall", "Random", "RandomFeatures", "ScikitLearn", "StableRNGs", "Statistics", "StatsBase"] +git-tree-sha1 = "5fbe0e8be41107e4470cea36092a6c7b082c67d8" +uuid = "95e48a1f-0bec-4818-9538-3db4340308e3" +version = "0.5.0" + [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" @@ -341,6 +400,27 @@ deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.0.5+1" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.Conda]] +deps = ["Downloads", "JSON", "VersionParsing"] +git-tree-sha1 = "51cab8e982c5b598eea9c8ceaced4b58d9dd37c9" +uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" +version = "1.10.0" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + [[deps.ConstructionBase]] deps = ["LinearAlgebra"] git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" @@ -401,6 +481,11 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" @@ -519,11 +604,17 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +[[deps.ElasticArrays]] +deps = ["Adapt"] +git-tree-sha1 = "75e5697f521c9ab89816d3abeea806dfc5afb967" +uuid = "fdbdab4c-e67f-52f5-8c3f-e7b388dad3d4" +version = "1.2.12" + +[[deps.ElasticPDMats]] +deps = ["LinearAlgebra", "MacroTools", "PDMats"] +git-tree-sha1 = "5157c93fe9431a041e4cd84265dfce3d53a52323" +uuid = "2904ab23-551e-5aed-883f-487f97af5226" +version = "0.2.2" [[deps.Elliptic]] git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" @@ -580,9 +671,9 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0f478d8bad6f52573fb7658a263af61f3d96e43a" +git-tree-sha1 = "58d83dd5a78a36205bdfddb82b1bb67682e64487" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "0.5.1" +version = "0.4.9" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] @@ -595,13 +686,12 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.3" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] +version = "1.7.0" +weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] - FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -627,6 +717,12 @@ git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" +[[deps.Formatting]] +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" +uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" +version = "0.4.3" + [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" @@ -687,11 +783,17 @@ git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" version = "0.5.8" +[[deps.GaussianProcesses]] +deps = ["Distances", "Distributions", "ElasticArrays", "ElasticPDMats", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "Optim", "PDMats", "Printf", "ProgressMeter", "Random", "RecipesBase", "ScikitLearnBase", "SpecialFunctions", "StaticArrays", "Statistics", "StatsFuns"] +git-tree-sha1 = "31749ff6868caf6dd50902eec652a724071dbed3" +uuid = "891a1506-143c-57d2-908e-e1f8e92e6de9" +version = "0.12.5" + [[deps.GaussianRandomFields]] -deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "Random", "RecipesBase", "SpecialFunctions", "Statistics", "StatsBase"] -git-tree-sha1 = "055849d7a602c31eda477a0b0b86c9473a3e4fb9" +deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "RecipesBase", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "d9c335f2c06424029b2addf9abf602e0feb2f53e" uuid = "e4b2fa32-6e09-5554-b718-106ed5adafe9" -version = "2.2.4" +version = "2.1.6" [[deps.GilbertCurves]] git-tree-sha1 = "3e076ca96e34a47e98a46657b2bec2655a366d80" @@ -720,23 +822,28 @@ git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" version = "1.14.3+1" +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" + [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.10.0+0" -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + [[deps.InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" @@ -786,15 +893,26 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.12" + [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.1.1" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -835,6 +953,12 @@ weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.8" + [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" @@ -898,6 +1022,12 @@ version = "0.1.15" deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -951,6 +1081,12 @@ weakdeps = ["ChainRulesCore"] [deps.LinearOperators.extensions] LinearOperatorsChainRulesCoreExt = "ChainRulesCore" +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" @@ -970,18 +1106,53 @@ version = "0.3.27" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.166" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" + [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" version = "1.9.4+0" +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "5.7.1" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "Tables"] +git-tree-sha1 = "d1737c39191aa26f42a64e320de313f1d1fd74b1" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.2.1" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2024.0.0+0" +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.5" + [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] git-tree-sha1 = "4e3136db3735924f96632a5b40a5979f1f53fa07" @@ -1040,6 +1211,12 @@ deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.2+1" +[[deps.MicroCollections]] +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.1.4" + [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" @@ -1106,6 +1283,11 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + [[deps.NetCDF]] deps = ["DiskArrays", "NetCDF_jll"] git-tree-sha1 = "c8ec10c6b72e35f7020b83330f8054908ba454eb" @@ -1189,10 +1371,10 @@ uuid = "c2071276-7c44-58a7-b746-946036e04d0a" version = "0.24.1+0" [[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] +git-tree-sha1 = "95a4038d1011dfdbde7cecd2ad0ac411e53ab1bc" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.31" +version = "0.10.1" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1285,6 +1467,24 @@ git-tree-sha1 = "b437cdb0385ed38312d91d9c00c20f3798b30256" uuid = "49802e3a-d2f1-5c88-81d8-b72133a6f568" version = "1.5.1" +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PyCall]] +deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"] +git-tree-sha1 = "9816a3826b0ebf49ab4926e2b18842ad8b5c8f04" +uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" +version = "1.96.4" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1315,12 +1515,23 @@ git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" +[[deps.RandomFeatures]] +deps = ["Distributions", "DocStringExtensions", "EnsembleKalmanProcesses", "LinearAlgebra", "LoopVectorization", "Random", "SpecialFunctions", "Statistics", "StatsBase", "Tullio"] +git-tree-sha1 = "592c96dd5cb2ebd635b551491cb3621bbe010ca0" +uuid = "36c3bae2-c0c3-419d-b3b4-eebadd35c5e5" +version = "0.3.2" + [[deps.RandomNumbers]] deps = ["Random", "Requires"] git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" version = "1.5.3" +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + [[deps.Ratios]] deps = ["Requires"] git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" @@ -1339,9 +1550,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" +git-tree-sha1 = "b81c1728477663d4104910f448770f448f946d11" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.10.1" +version = "3.11.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1423,6 +1634,12 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" @@ -1454,6 +1671,23 @@ git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.ScikitLearn]] +deps = ["Compat", "Conda", "DataFrames", "Distributed", "IterTools", "LinearAlgebra", "MacroTools", "Parameters", "Printf", "PyCall", "Random", "ScikitLearnBase", "SparseArrays", "StatsBase", "VersionParsing"] +git-tree-sha1 = "3df098033358431591827bb86cada0bed744105a" +uuid = "3646fa90-6ef7-5e7e-9f22-8aca16db6324" +version = "0.7.0" + +[[deps.ScikitLearnBase]] +deps = ["LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f" +uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e" +version = "0.5.0" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" @@ -1503,6 +1737,18 @@ weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StableRNGs]] +deps = ["Random", "Test"] +git-tree-sha1 = "ddc1a7b85e760b5285b50b882fa91e40c603be47" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.1" + [[deps.Static]] deps = ["IfElse"] git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" @@ -1536,6 +1782,12 @@ git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.2" +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -1549,23 +1801,15 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" +git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" +version = "0.33.21" [[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +deps = ["ChainRulesCore", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "5950925ff997ed6fb3e985dcce8eb1ba42a0bbe7" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.9.18" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] @@ -1643,6 +1887,12 @@ version = "0.16.0" [deps.TaylorSeries.weakdeps] IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" @@ -1683,6 +1933,26 @@ weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -1694,6 +1964,24 @@ git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" +[[deps.Tullio]] +deps = ["DiffRules", "LinearAlgebra", "Requires"] +git-tree-sha1 = "6d476962ba4e435d7f4101a403b1d3d72afe72f3" +uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" +version = "0.3.7" + + [deps.Tullio.extensions] + TullioCUDAExt = "CUDA" + TullioChainRulesCoreExt = "ChainRulesCore" + TullioFillArraysExt = "FillArrays" + TullioTrackerExt = "Tracker" + + [deps.Tullio.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" @@ -1723,6 +2011,17 @@ git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" version = "0.1.3" +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.65" + +[[deps.VersionParsing]] +git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" +uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" +version = "1.3.0" + [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" diff --git a/experiments/surface_fluxes_perfect_model/Manifest.toml b/experiments/surface_fluxes_perfect_model/Manifest.toml index 2b8885e0..60251bfb 100644 --- a/experiments/surface_fluxes_perfect_model/Manifest.toml +++ b/experiments/surface_fluxes_perfect_model/Manifest.toml @@ -4,6 +4,11 @@ julia_version = "1.10.0" manifest_format = "2.0" project_hash = "b6ca4ec40abe2053616063b747935de1976b98cc" +[[deps.ADTypes]] +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.6" + [[deps.AMD]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" @@ -21,6 +26,12 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "4.4.2" + [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -28,14 +39,36 @@ version = "0.4.5" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "e2a9873379849ce2ac9f9fa34b0e37bde5d5fe0a" +git-tree-sha1 = "cea4ac3f5b4bc4b3000aa55afb6e5626518948fa" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.2" +version = "4.0.3" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.7.5" + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + + [deps.AdvancedMH.weakdeps] + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" @@ -53,10 +86,10 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.1+1" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "881e43f1aa014a6f75c8fc0847860e00a1500846" +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "c85c172841acde8dcdf5d77967b14c89c33d65cc" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.8.0" +version = "7.8.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -95,6 +128,18 @@ git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" version = "0.1.0" +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66" @@ -111,15 +156,46 @@ weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] BandedMatricesSparseArraysExt = "SparseArrays" +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.40" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" version = "1.5.0" +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" +version = "0.1.5" + [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" @@ -139,9 +215,15 @@ version = "0.5.0" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "cf4f5ee75576ae855eca7da064540ce40b9a04c1" +git-tree-sha1 = "9fcb37be791b4762943cbbf15ccf35c99d91460c" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.8.6" +version = "0.9.1" + +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] +git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.2.4" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] @@ -172,18 +254,18 @@ git-tree-sha1 = "8e25c009d2bf16c2c31a70a6e9e8939f7325cc84" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" version = "0.11.1+0" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.CalibrateAtmos]] -deps = ["ClimaComms", "ClimaCore", "Distributions", "EnsembleKalmanProcesses", "JLD2", "LinearAlgebra", "Random", "TOML", "YAML"] +deps = ["CalibrateEmulateSample", "ClimaComms", "ClimaCore", "Distributions", "EnsembleKalmanProcesses", "JLD2", "PrecompileTools", "Random", "SciMLBase", "TOML", "YAML"] path = "../.." uuid = "4347a170-ebd6-470c-89d3-5c705c0cacc2" version = "0.1.0" +[[deps.CalibrateEmulateSample]] +deps = ["AbstractMCMC", "AdvancedMH", "Conda", "Distributions", "DocStringExtensions", "EnsembleKalmanProcesses", "GaussianProcesses", "LinearAlgebra", "MCMCChains", "Pkg", "Printf", "ProgressBars", "PyCall", "Random", "RandomFeatures", "ScikitLearn", "StableRNGs", "Statistics", "StatsBase"] +git-tree-sha1 = "5fbe0e8be41107e4470cea36092a6c7b082c67d8" +uuid = "95e48a1f-0bec-4818-9538-3db4340308e3" +version = "0.5.0" + [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" @@ -196,15 +278,15 @@ weakdeps = ["SparseArrays"] [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "57c054ddd4280ca8e2b5915ef1cf1395c4edbc78" +git-tree-sha1 = "f0350e34c91c8f3b5a11b5e39990439303d727b1" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.6" +version = "0.5.7" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "541bf25a8adc3c7ddf8d45a96149964f5cfbb074" +git-tree-sha1 = "fd3bb1f7655ebcc8c8a652a8cc6c4f7f2620ae72" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.9" +version = "0.12.1" [deps.ClimaCore.extensions] KrylovExt = "Krylov" @@ -212,6 +294,12 @@ version = "0.11.9" [deps.ClimaCore.weakdeps] Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +[[deps.CloseOpenIntervals]] +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.12" + [[deps.CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" @@ -236,6 +324,11 @@ git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.10" +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + [[deps.CommonSubexpressions]] deps = ["MacroTools", "Test"] git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" @@ -257,6 +350,27 @@ deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.0.5+1" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.Conda]] +deps = ["Downloads", "JSON", "VersionParsing"] +git-tree-sha1 = "51cab8e982c5b598eea9c8ceaced4b58d9dd37c9" +uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" +version = "1.10.0" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + [[deps.ConstructionBase]] deps = ["LinearAlgebra"] git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" @@ -274,6 +388,12 @@ git-tree-sha1 = "e84e371b9206bdd678fe7a8cf809c7dec949e88f" uuid = "f65535da-76fb-5f13-bab9-19810c17039a" version = "0.15.4" +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" + [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" @@ -311,6 +431,11 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -323,6 +448,17 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -354,11 +490,17 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +[[deps.ElasticArrays]] +deps = ["Adapt"] +git-tree-sha1 = "75e5697f521c9ab89816d3abeea806dfc5afb967" +uuid = "fdbdab4c-e67f-52f5-8c3f-e7b388dad3d4" +version = "1.2.12" + +[[deps.ElasticPDMats]] +deps = ["LinearAlgebra", "MacroTools", "PDMats"] +git-tree-sha1 = "5157c93fe9431a041e4cd84265dfce3d53a52323" +uuid = "2904ab23-551e-5aed-883f-487f97af5226" +version = "0.2.2" [[deps.Elliptic]] git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" @@ -371,6 +513,11 @@ git-tree-sha1 = "b67e9cc4cd50415c17388696c4ec208b02fceba2" uuid = "aa8a2aa5-91d8-4396-bcef-d4f2ec43552d" version = "1.1.5" +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" @@ -390,9 +537,9 @@ version = "3.3.10+0" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0f478d8bad6f52573fb7658a263af61f3d96e43a" +git-tree-sha1 = "58d83dd5a78a36205bdfddb82b1bb67682e64487" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "0.5.1" +version = "0.4.9" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] @@ -405,13 +552,12 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.3" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] +version = "1.7.0" +weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] - FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -437,6 +583,12 @@ git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" +[[deps.Formatting]] +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" +uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" +version = "0.4.3" + [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" @@ -447,6 +599,17 @@ weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] ForwardDiffStaticArraysExt = "StaticArrays" +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" @@ -475,11 +638,17 @@ git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" version = "0.5.8" +[[deps.GaussianProcesses]] +deps = ["Distances", "Distributions", "ElasticArrays", "ElasticPDMats", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "Optim", "PDMats", "Printf", "ProgressMeter", "Random", "RecipesBase", "ScikitLearnBase", "SpecialFunctions", "StaticArrays", "Statistics", "StatsFuns"] +git-tree-sha1 = "31749ff6868caf6dd50902eec652a724071dbed3" +uuid = "891a1506-143c-57d2-908e-e1f8e92e6de9" +version = "0.12.5" + [[deps.GaussianRandomFields]] -deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "Random", "RecipesBase", "SpecialFunctions", "Statistics", "StatsBase"] -git-tree-sha1 = "055849d7a602c31eda477a0b0b86c9473a3e4fb9" +deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "RecipesBase", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "d9c335f2c06424029b2addf9abf602e0feb2f53e" uuid = "e4b2fa32-6e09-5554-b718-106ed5adafe9" -version = "2.2.4" +version = "2.1.6" [[deps.GilbertCurves]] git-tree-sha1 = "3e076ca96e34a47e98a46657b2bec2655a366d80" @@ -502,23 +671,28 @@ git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" version = "1.14.3+1" +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" + [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.10.0+0" -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + [[deps.InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" @@ -535,6 +709,18 @@ version = "2024.0.2+0" deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.IntervalSets]] git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" @@ -546,15 +732,26 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.12" + [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.1.1" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -597,6 +794,12 @@ version = "0.9.18" [deps.KernelAbstractions.weakdeps] EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.8" + [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] git-tree-sha1 = "5cebb47f472f086f7dd31fb8e738a8db728f1f84" @@ -635,10 +838,22 @@ git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" +[[deps.LayoutPointers]] +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.15" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -682,6 +897,12 @@ version = "7.2.0" deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" @@ -701,12 +922,47 @@ version = "0.3.27" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.166" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "5.7.1" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "Tables"] +git-tree-sha1 = "d1737c39191aa26f42a64e320de313f1d1fd74b1" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.2.1" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2024.0.0+0" +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.5" + [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] git-tree-sha1 = "4e3136db3735924f96632a5b40a5979f1f53fa07" @@ -745,6 +1001,11 @@ git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" +[[deps.ManualMemory]] +git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" +uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" +version = "0.1.8" + [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" @@ -760,6 +1021,12 @@ deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.2+1" +[[deps.MicroCollections]] +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.1.4" + [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" @@ -809,10 +1076,24 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.OffsetArrays]] +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" @@ -859,10 +1140,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" [[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] +git-tree-sha1 = "95a4038d1011dfdbde7cecd2ad0ac411e53ab1bc" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.31" +version = "0.10.1" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -887,6 +1168,12 @@ git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.3.3" +[[deps.PolyesterWeave]] +deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] +git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" +uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" +version = "0.2.1" + [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -931,6 +1218,24 @@ git-tree-sha1 = "b437cdb0385ed38312d91d9c00c20f3798b30256" uuid = "49802e3a-d2f1-5c88-81d8-b72133a6f568" version = "1.5.1" +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PyCall]] +deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"] +git-tree-sha1 = "9816a3826b0ebf49ab4926e2b18842ad8b5c8f04" +uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" +version = "1.96.4" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -951,12 +1256,33 @@ git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" +[[deps.RandomFeatures]] +deps = ["Distributions", "DocStringExtensions", "EnsembleKalmanProcesses", "LinearAlgebra", "LoopVectorization", "Random", "SpecialFunctions", "Statistics", "StatsBase", "Tullio"] +git-tree-sha1 = "592c96dd5cb2ebd635b551491cb3621bbe010ca0" +uuid = "36c3bae2-c0c3-419d-b3b4-eebadd35c5e5" +version = "0.3.2" + [[deps.RandomNumbers]] deps = ["Random", "Requires"] git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" version = "1.5.3" +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + [[deps.RecipesBase]] deps = ["PrecompileTools"] git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" @@ -965,9 +1291,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" +git-tree-sha1 = "b81c1728477663d4104910f448770f448f946d11" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.10.1" +version = "3.11.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1016,6 +1342,12 @@ git-tree-sha1 = "a87fd671f7a298de98f2f3c5a9cd9890714eb9dd" uuid = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74" version = "0.4.2" +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.12" + [[deps.SCS]] deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_jll", "SparseArrays"] git-tree-sha1 = "8d908b7c81e199ee92d17b6192849e8c43d2f31d" @@ -1038,6 +1370,65 @@ version = "3.2.0+0" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SIMDTypes]] +git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" +uuid = "94e857df-77ce-4151-89e5-788b33177be4" +version = "0.1.0" + +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.29.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.ScikitLearn]] +deps = ["Compat", "Conda", "DataFrames", "Distributed", "IterTools", "LinearAlgebra", "MacroTools", "Parameters", "Printf", "PyCall", "Random", "ScikitLearnBase", "SparseArrays", "StatsBase", "VersionParsing"] +git-tree-sha1 = "3df098033358431591827bb86cada0bed744105a" +uuid = "3646fa90-6ef7-5e7e-9f22-8aca16db6324" +version = "0.7.0" + +[[deps.ScikitLearnBase]] +deps = ["LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f" +uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e" +version = "0.5.0" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" @@ -1059,6 +1450,10 @@ git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.1.1" +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" @@ -1083,12 +1478,35 @@ weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StableRNGs]] +deps = ["Random", "Test"] +git-tree-sha1 = "ddc1a7b85e760b5285b50b882fa91e40c603be47" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.1" + [[deps.Static]] deps = ["IfElse"] git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" version = "0.8.10" +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.5.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" @@ -1105,6 +1523,12 @@ git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.2" +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -1118,23 +1542,15 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" +git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" +version = "0.33.21" [[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +deps = ["ChainRulesCore", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "5950925ff997ed6fb3e985dcce8eb1ba42a0bbe7" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.9.18" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -1159,13 +1575,15 @@ version = "7.2.1+1" [[deps.SurfaceFluxes]] deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb" +git-tree-sha1 = "89c701c87f378ce95e7ddbcd69b8f1106ba8b968" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.9.1" -weakdeps = ["CLIMAParameters"] +version = "0.11.0" [deps.SurfaceFluxes.extensions] - CreateParametersExt = "CLIMAParameters" + CreateParametersExt = "ClimaParams" + + [deps.SurfaceFluxes.weakdeps] + ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" [[deps.SymbolicIndexingInterface]] git-tree-sha1 = "7303000b4a1d5348c8c26fc4c856f5f4982885b1" @@ -1206,19 +1624,33 @@ version = "0.16.0" [deps.TaylorSeries.weakdeps] IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] -git-tree-sha1 = "090a50e507242bd6c85267645186260fe89a1cfe" +git-tree-sha1 = "6098c65a2ad62312ac74cb1627c8fb33efe33287" uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" -version = "0.11.7" -weakdeps = ["CLIMAParameters"] +version = "0.12.5" [deps.Thermodynamics.extensions] - CreateParametersExt = "CLIMAParameters" + CreateParametersExt = "ClimaParams" + + [deps.Thermodynamics.weakdeps] + ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c" + +[[deps.ThreadingUtilities]] +deps = ["ManualMemory"] +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" +version = "0.5.2" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -1235,6 +1667,44 @@ weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Tullio]] +deps = ["DiffRules", "LinearAlgebra", "Requires"] +git-tree-sha1 = "6d476962ba4e435d7f4101a403b1d3d72afe72f3" +uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" +version = "0.3.7" + + [deps.Tullio.extensions] + TullioCUDAExt = "CUDA" + TullioChainRulesCoreExt = "ChainRulesCore" + TullioFillArraysExt = "FillArrays" + TullioTrackerExt = "Tracker" + + [deps.Tullio.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" @@ -1264,6 +1734,23 @@ git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" version = "0.1.3" +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.65" + +[[deps.VersionParsing]] +git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" +uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" +version = "1.3.0" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] git-tree-sha1 = "e6330e4b731a6af7959673621e91645eb1356884"