diff --git a/.buildkite/longruns/pipeline.yml b/.buildkite/longruns/pipeline.yml index 5a6733c23f..1007d678ac 100644 --- a/.buildkite/longruns/pipeline.yml +++ b/.buildkite/longruns/pipeline.yml @@ -1,7 +1,7 @@ agents: queue: central slurm_time: 24:00:00 - modules: julia/1.9.4 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.3.1 + modules: julia/1.10.0 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.4.1 env: JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite" @@ -27,15 +27,6 @@ steps: - label: "init :computer:" key: "init_cpu_env" command: - - # Local MPIPreferences take precedence over the one set by JuliaProject.toml, - # so we make sure that we remove them to use MPITrampoline. - # - # TODO: This can be removed once all the branches that use MPIPreferences - # are deleted - - echo "--- Remove MPIPreferences" - - "rm -f ${JULIA_DEPOT_PATH}/environments/v1.9/LocalPreferences.toml" - - echo "--- Instantiate AMIP env" - "julia --project=experiments/AMIP/ -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - "julia --project=experiments/AMIP/ -e 'using Pkg; Pkg.precompile()'" diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index d1db1e4101..6ea1f48c18 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -1,7 +1,7 @@ agents: queue: central slurm_time: 24:00:00 - modules: julia/1.9.4 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.3.1 + modules: julia/1.10.0 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.4.1 env: JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite" @@ -34,14 +34,6 @@ steps: rm -rf ${JULIA_DEPOT_PATH} fi - # Local MPIPreferences take precedence over the one set by JuliaProject.toml, - # so we make sure that we remove them to use MPITrampoline. - # - # TODO: This can be removed once all the branches that use MPIPreferences - # are deleted - - echo "--- Remove MPIPreferences" - - "rm -f ${JULIA_DEPOT_PATH}/environments/v1.9/LocalPreferences.toml" - - echo "--- Instantiate package env" - "julia --project -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - "julia --project -e 'using Pkg; Pkg.precompile()'" diff --git a/.github/workflows/CodeCoverage.yml b/.github/workflows/CodeCoverage.yml index ec33a77182..5bbf305ece 100644 --- a/.github/workflows/CodeCoverage.yml +++ b/.github/workflows/CodeCoverage.yml @@ -15,7 +15,7 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@latest with: - version: 1.9 + version: '1.10' - name: Test with coverage run: | diff --git a/.github/workflows/Documentation.yml b/.github/workflows/Documentation.yml index 41f5e25a9b..3ed978d9cb 100644 --- a/.github/workflows/Documentation.yml +++ b/.github/workflows/Documentation.yml @@ -14,7 +14,7 @@ jobs: - uses: actions/checkout@v2 - uses: julia-actions/setup-julia@latest with: - version: 1.9 + version: '1.10' - name: Install dependencies run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()' - name: Build and deploy diff --git a/.github/workflows/JuliaFormatter.yml b/.github/workflows/JuliaFormatter.yml index 12e913bc58..b998305d91 100644 --- a/.github/workflows/JuliaFormatter.yml +++ b/.github/workflows/JuliaFormatter.yml @@ -27,7 +27,7 @@ jobs: - uses: julia-actions/setup-julia@latest if: steps.filter.outputs.julia_file_change == 'true' with: - version: 1.9 + version: '1.10' - name: Apply JuliaFormatter if: steps.filter.outputs.julia_file_change == 'true' diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index fbb4533d25..efbdfe08da 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -12,7 +12,7 @@ jobs: fail-fast: false matrix: version: - - '1.9' + - '1.10' os: - ubuntu-latest - macOS-latest diff --git a/Project.toml b/Project.toml index ec6eac9caa..0037790713 100644 --- a/Project.toml +++ b/Project.toml @@ -25,11 +25,11 @@ Thermodynamics = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c" [compat] CLIMAParameters = "0.4, 0.5, 0.6, 0.7" -ClimaAtmos = "0.17.1" +ClimaAtmos = "0.19.1" ClimaComms = "0.5.6" -ClimaCore = "0.11.3" +ClimaCore = "0.11.8" ClimaCoreTempestRemap = "0.3" -ClimaLSM = "0.4" +ClimaLSM = "0.5" Dates = "1" DocStringExtensions = "0.8, 0.9" Insolation = "0.8" diff --git a/README.md b/README.md index d397bfcd8c..699fb1e09f 100644 --- a/README.md +++ b/README.md @@ -23,4 +23,4 @@ Coupler Specific Shared Development Provides coupled system time stepping control and support for mapping import and export boundary information between components. -Recommended Julia Version: Stable release v1.9.4. CI no longer tests earlier versions of Julia. +Recommended Julia Version: Stable release v1.10.0. CI no longer tests earlier versions of Julia. diff --git a/experiments/AMIP/Manifest.toml b/experiments/AMIP/Manifest.toml index 92b1a22522..9d732ba0ed 100644 --- a/experiments/AMIP/Manifest.toml +++ b/experiments/AMIP/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.4" +julia_version = "1.10.0" manifest_format = "2.0" project_hash = "e30e3cec173b96ef0f39af976fadb60750b6f220" [[deps.ADTypes]] -git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.5" +version = "0.2.6" [[deps.AMD]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -31,35 +31,21 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.33" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.1" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + [[deps.ArgParse]] deps = ["Logging", "TextWrap"] git-tree-sha1 = "3102bce13da501c9104df33549f511cd25264d7d" @@ -72,9 +58,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "247efbccf92448be332d154d6ca56b9fcdd93c31" +git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.6.1" +version = "7.7.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -94,9 +80,9 @@ version = "7.6.1" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" +git-tree-sha1 = "a45ec4acc9d905f94b47243cff666820bb107789" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.3" +version = "1.5.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -125,9 +111,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] @@ -137,17 +123,42 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "06a2a94d5a4979c36cc7a3c28d70800f448ae5bb" +git-tree-sha1 = "27baf04c642465b4289179f29bb7127f0673d4f1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.3.0" +version = "1.4.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] BandedMatricesSparseArraysExt = "SparseArrays" +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.39" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + [[deps.BitFlags]] git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -161,20 +172,20 @@ version = "0.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "54cd829dd26330c42e1cf9df68470dd4df602c61" +git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.38" +version = "0.16.39" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" +version = "0.4.2" [[deps.CFTime]] deps = ["Dates", "Printf"] @@ -194,11 +205,17 @@ git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.4" +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.12" + [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "76582ae19006b1186e87dadd781747f76cead72c" +git-tree-sha1 = "95ac638373ac40e29c1b6d086a3698f5026ff6a6" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.1.1" +version = "5.1.2" weakdeps = ["ChainRulesCore", "SpecialFunctions"] [deps.CUDA.extensions] @@ -207,9 +224,9 @@ weakdeps = ["ChainRulesCore", "SpecialFunctions"] [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "1e42ef1bdb45487ff28de16182c0df4920181dc3" +git-tree-sha1 = "d01bfc999768f0a31ed36f5d22a76161fc63079c" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.7.0+0" +version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -223,6 +240,12 @@ git-tree-sha1 = "9704e50c9158cf8896c2776b8dbc5edd136caf80" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" version = "0.10.1+0" +[[deps.CUDNN_jll]] +deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "75923dce4275ead3799b238e10178a68c07dbd3b" +uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" +version = "8.9.4+0" + [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" @@ -235,21 +258,27 @@ git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc" uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "0aa0a3dd7b9bacbbadf1932ccbdfa938985c5561" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.58.1" + [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" +git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.18.0" +version = "1.19.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ClimaAtmos]] -deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Test", "Thermodynamics", "YAML"] -git-tree-sha1 = "468d3045770744ac071b0331a0cfc997cc57642c" +deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"] +git-tree-sha1 = "1115a9385729b0e33b1962a673e2729b1d817931" uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.17.2" +version = "0.19.1" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] @@ -258,10 +287,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" version = "0.5.6" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"] -git-tree-sha1 = "37b3034ab1cfd137e3b014f963d5f1c8e775c38e" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.3" +version = "0.11.8" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -274,10 +303,10 @@ uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" version = "0.2.6" [[deps.ClimaCoreTempestRemap]] -deps = ["ClimaComms", "ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] -git-tree-sha1 = "325a709968ce6c3c284c4b9a79f9f614dcd1131c" +deps = ["ClimaComms", "ClimaCore", "CommonDataModel", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] +git-tree-sha1 = "da5726ce5a79ec27a95bd6d4f178bd4022ca8f39" uuid = "d934ef94-cdd4-4710-83d6-720549644b70" -version = "0.3.11" +version = "0.3.12" [[deps.ClimaCoupler]] deps = ["CLIMAParameters", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "ClimaLSM", "Dates", "DocStringExtensions", "Insolation", "JLD2", "NCDatasets", "Plots", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "Thermodynamics"] @@ -286,10 +315,10 @@ uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.0" [[deps.ClimaLSM]] -deps = ["ArtifactWrappers", "CFTime", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "DocStringExtensions", "IntervalSets", "JLD2", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] -git-tree-sha1 = "5de9154317c208ab4bc96ce7a8847010a40bf03d" +deps = ["ArtifactWrappers", "CFTime", "CSV", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "DataFrames", "Dates", "DocStringExtensions", "Flux", "HTTP", "IntervalSets", "JLD2", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "StatsBase", "SurfaceFluxes", "Thermodynamics", "cuDNN"] +git-tree-sha1 = "7f05edc3f421394f8ffb810ea4da5f4764c20628" uuid = "7884a58f-fab6-4fd0-82bb-ecfedb2d8430" -version = "0.4.1" +version = "0.5.0" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] @@ -361,10 +390,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "75bd5b6fc5089df449b5d35fa501c846c9b6549b" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.1" +version = "4.12.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -373,27 +402,24 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.0.5+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" version = "0.1.2" -weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [deps.CompositionsBase.weakdeps] + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.ComputationalResources]] git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" version = "0.3.2" -[[deps.ConcreteStructs]] -git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" -uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" -version = "0.2.3" - [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" @@ -411,6 +437,12 @@ weakdeps = ["IntervalSets", "StaticArrays"] ConstructionBaseIntervalSetsExt = "IntervalSets" ConstructionBaseStaticArraysExt = "StaticArrays" +[[deps.ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.3" + [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" @@ -451,9 +483,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "ac67408d9ddf207de5cfa9a97e114352430f01ed" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.16" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -464,6 +496,11 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" @@ -484,9 +521,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "b983d7e2b869375c74b1197fb65209b6f528d28f" +git-tree-sha1 = "6af33c2eb7478db06bcf5c810e6f3dda53aac2ac" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.141.1" +version = "6.146.0" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -514,9 +551,9 @@ version = "6.141.1" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "4e4de57a0ac47b2f20aae62f132355b058e9f0cd" +git-tree-sha1 = "cf334da651a6e42c50e1477d6ab978f1b8be3057" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.34.0" +version = "2.36.1" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -577,10 +614,13 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -deps = ["Adapt"] -git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b" +git-tree-sha1 = "59c44d8fbc651c0395d8a6eda64b05ce316f58b4" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.4" +version = "0.6.5" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -590,9 +630,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -625,9 +665,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -635,6 +675,18 @@ git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" +[[deps.FLoops]] +deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] +git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" +uuid = "cc61a311-1640-44b5-9fba-1b764f453329" +version = "0.2.1" + +[[deps.FLoopsBase]] +deps = ["ContextVariablesX"] +git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" +uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" +version = "0.1.1" + [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" @@ -648,24 +700,30 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f" +git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.0" +version = "1.0.2" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "25a10f2b86118664293062705fd9c7e2eda881a2" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.2" +version = "1.9.3" [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" @@ -679,9 +737,9 @@ version = "1.9.2" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" +version = "2.22.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -699,6 +757,24 @@ git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" +[[deps.Flux]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "2827339fbc2291d541a9c62ffbf28da7f3621ae4" +uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" +version = "0.14.9" + + [deps.Flux.extensions] + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] + FluxMetalExt = "Metal" + + [deps.Flux.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" @@ -755,10 +831,10 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] @@ -840,10 +916,10 @@ weakdeps = ["MPI"] MPIExt = "MPI" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.2+1" +version = "1.14.3+0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -857,6 +933,12 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" +[[deps.IRTools]] +deps = ["InteractiveUtils", "MacroTools", "Test"] +git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d" +uuid = "7869d1d1-7146-5819-86e3-90919afe41df" +version = "0.4.11" + [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -880,6 +962,11 @@ git-tree-sha1 = "432ae2b430a18c58eb7eca9ef8d0f2db90bc749c" uuid = "6a3955dd-da59-5b1f-98d4-e7296123deb5" version = "0.7.8" +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + [[deps.InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" @@ -888,20 +975,15 @@ version = "1.4.0" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "ec703ca8951d6beb6ca68988044c7c377d14a244" +git-tree-sha1 = "2679907708edd9bbe2bd98585e575b48f17902c8" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.8.1" - -[[deps.IntegerMathUtils]] -git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" -uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.2" +version = "0.8.2" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b" +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -909,9 +991,13 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] deps = ["Dates", "Random"] @@ -923,12 +1009,6 @@ weakdeps = ["Statistics"] [deps.IntervalSets.extensions] IntervalSetsStatisticsExt = "Statistics" -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" @@ -946,9 +1026,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730" +git-tree-sha1 = "315b508ec5df53936532097ffe6e5deacbf41861" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.38" +version = "0.4.44" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -970,9 +1050,9 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.1+0" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -980,11 +1060,17 @@ git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" +[[deps.JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" + [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "81de11f7b02465435aab0ed7e935965bfcb3072b" +git-tree-sha1 = "4e0cb2f5aad44dcfdc91088e85dee4ecb22c791c" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.14" +version = "0.9.16" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -992,9 +1078,9 @@ weakdeps = ["EnzymeCore"] [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.4" +version = "0.9.5" [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] @@ -1022,9 +1108,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "0678579657515e88b6632a3a482d39adcbb80445" +git-tree-sha1 = "cb4619f7353fc62a1a22ffa3d7ed9791cfb47ad8" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.4.1" +version = "6.4.2" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -1042,10 +1128,10 @@ uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586" version = "1.0.0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1072,12 +1158,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.LatticeRules]] -deps = ["Random"] -git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" -uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" -version = "0.0.1" - [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" @@ -1111,9 +1191,14 @@ uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" @@ -1181,10 +1266,14 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "a58ab1d18efa0bcf9f0868c6d387e4126dad3e72" +deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "58e2ca62646a62e18f86253b9c2a2d821c2d934b" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.5.2" +version = "2.6.0" +weakdeps = ["ChainRulesCore"] + + [deps.LinearOperators.extensions] + LinearOperatorsChainRulesCoreExt = "ChainRulesCore" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1212,10 +1301,21 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" + +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" + +[[deps.MLUtils]] +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" +uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" +version = "0.4.4" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1233,9 +1333,9 @@ version = "0.20.19" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" +git-tree-sha1 = "2ee75365ca243c1a39d467e35ffd3d4d32eef11e" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.1.2+0" +version = "4.1.2+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1245,15 +1345,15 @@ version = "0.1.10" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "6979eccb6a9edbbb62681e158443e79ecc0d056a" +git-tree-sha1 = "8eeb3c73bbc0ca203d0dc8dad4008350bbe5797b" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.3.1+0" +version = "5.3.1+1" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1278,18 +1378,18 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" -[[deps.Memoize]] -deps = ["MacroTools"] -git-tree-sha1 = "2b1dfcba103de714d31c033b5dacc2e4a12c7caa" -uuid = "c03570c3-d221-55d1-a50c-7939bbd78826" -version = "0.4.4" +[[deps.MicroCollections]] +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.1.4" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1314,7 +1414,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1323,9 +1423,9 @@ version = "0.2.4" [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "7fcb4378f9c648a186bcb996fa29acc929a179ed" +git-tree-sha1 = "173a378f357e9bb24b22019efb5e4778223ce8cf" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.13.1" +version = "0.13.2" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1339,11 +1439,29 @@ git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.5.1" +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "900a11b3a2b02e36b25cb55a80777d4a4670f0f6" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.10" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] -git-tree-sha1 = "8bc9ce4233be3c63f8dcd78ccaf1b63a9c0baa34" +git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f" -version = "0.3.3" +version = "0.3.4" [[deps.NVTX_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1357,6 +1475,12 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NameResolution]] +deps = ["PrettyPrint"] +git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" +uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" +version = "0.1.5" + [[deps.NetCDF_jll]] deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1" @@ -1368,10 +1492,13 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1379,21 +1506,27 @@ git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" +[[deps.OneHotArrays]] +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" +uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" +version = "0.2.4" + [[deps.OpenBLAS32_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "2fb9ee2dc14d555a6df2a714b86b7125178344c2" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.21+0" +version = "0.3.24+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+2" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1419,6 +1552,12 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.1" + [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" @@ -1433,7 +1572,7 @@ version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PaddedViews]] deps = ["OffsetArrays"] @@ -1449,9 +1588,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.0" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1467,7 +1606,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1483,9 +1622,9 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] @@ -1526,10 +1665,10 @@ uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" version = "1.4.3" [[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] -git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "64bb68f76f789f5fe5930a80af310f19cdafeaed" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.12" +version = "0.4.17" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1549,18 +1688,17 @@ git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" +[[deps.PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" version = "2.3.1" -[[deps.Primes]] -deps = ["IntegerMathUtils"] -git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" -uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.5" - [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -1583,18 +1721,6 @@ git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.5.3+1" -[[deps.QuasiMonteCarlo]] -deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] -git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" -uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.3.3" - - [deps.QuasiMonteCarlo.extensions] - QuasiMonteCarloDistributionsExt = "Distributions" - - [deps.QuasiMonteCarlo.weakdeps] - Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" - [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1606,14 +1732,14 @@ uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" version = "0.10.0" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.6.2" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1631,6 +1757,12 @@ weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + [[deps.RecipesBase]] deps = ["PrecompileTools"] git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" @@ -1644,18 +1776,20 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "3.5.4" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -1700,10 +1834,10 @@ uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d432b4c4cc922fb7b21b555c138aa87f9fb7beb8" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "ad711463cb386572f33f6209464d8dca5a081247" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.9.1" +version = "2.19.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1753,6 +1887,11 @@ version = "1.1.1" deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +[[deps.ShowCases]] +git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" +uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" +version = "0.1.0" + [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -1764,24 +1903,31 @@ git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" -[[deps.Sobol]] -deps = ["DelimitedFiles", "Random"] -git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" -uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" -version = "1.5.0" +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.0" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1793,6 +1939,12 @@ weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + [[deps.StackViews]] deps = ["OffsetArrays"] git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" @@ -1807,9 +1959,9 @@ version = "0.8.8" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25" +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.1" +version = "1.5.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -1818,12 +1970,13 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" +git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.7.0" -weakdeps = ["Statistics"] +version = "1.9.1" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1834,7 +1987,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1866,26 +2019,31 @@ git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" +[[deps.StructArrays]] +deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] +git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.16" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SurfaceFluxes]] -deps = ["CLIMAParameters", "DocStringExtensions", "Logging", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "7f83013a0654d6504226d93ba0cba94d94e1b0b0" +deps = ["CLIMAParameters", "DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "a167924897731ee57ef0197bb19357bfc2d007bc" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.8.0" +version = "0.8.1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.3" [[deps.TOML]] deps = ["Dates"] @@ -1981,6 +2139,26 @@ weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -2025,18 +2203,27 @@ deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.19.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" InverseFunctionsUnitfulExt = "InverseFunctions" + [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" version = "1.6.3" +[[deps.Unrolled]] +deps = ["MacroTools"] +git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" +uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" +version = "0.1.5" + [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -2067,20 +2254,26 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" -[[deps.WeakValueDicts]] -git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" -uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" -version = "0.1.0" +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -2253,7 +2446,7 @@ version = "0.4.9" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2261,6 +2454,34 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.5+0" +[[deps.Zygote]] +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "30c1b8bfc2b3c7c5d8bba7cd32e8b6d5f968e7c3" +uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "0.6.68" + + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" + + [deps.Zygote.weakdeps] + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.cuDNN]] +deps = ["CEnum", "CUDA", "CUDA_Runtime_Discovery", "CUDNN_jll"] +git-tree-sha1 = "94f6b231d21b8a10f5c3ccc4b4009017ca922847" +uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" +version = "1.2.2" + [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" @@ -2300,7 +2521,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2321,10 +2542,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "f7c281e9c61905521993a987d38b5ab1d4b53bef" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+1" +version = "1.6.40+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2346,7 +2567,7 @@ version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/experiments/AMIP/components/land/bucket_init.jl b/experiments/AMIP/components/land/bucket_init.jl index 83dffc75cf..9bcc2a916f 100644 --- a/experiments/AMIP/components/land/bucket_init.jl +++ b/experiments/AMIP/components/land/bucket_init.jl @@ -1,28 +1,15 @@ # slab_rhs! using ClimaCore -using ClimaLSM -import ClimaLSM import ClimaTimeSteppers as CTS import Thermodynamics as TD using Dates: DateTime - -include(joinpath(pkgdir(ClimaLSM), "parameters", "create_parameters.jl")) -using ClimaLSM.Bucket: BucketModel, BucketModelParameters, AbstractAtmosphericDrivers, AbstractRadiativeDrivers using ClimaComms: AbstractCommsContext -import ClimaLSM.Bucket: - surface_fluxes, - net_radiation, - surface_air_density, - liquid_precipitation, - BulkAlbedoTemporal, - BulkAlbedoStatic, - BulkAlbedoFunction, - surface_albedo, - snow_precipitation - -using ClimaLSM: - make_exp_tendency, initialize, obtain_surface_space, make_set_initial_aux_state, surface_evaporative_scaling +import ClimaLSM +using ClimaLSM.Bucket: BucketModel, BucketModelParameters, AbstractAtmosphericDrivers, AbstractRadiativeDrivers +import ClimaLSM.Bucket: BulkAlbedoTemporal, BulkAlbedoStatic, BulkAlbedoFunction +using ClimaLSM: make_exp_tendency, initialize, make_set_initial_cache, surface_evaporative_scaling +include(joinpath(pkgdir(ClimaLSM), "parameters", "create_parameters.jl")) import ClimaCoupler.Interfacer: LandModelSimulation, get_field, update_field!, name import ClimaCoupler.FieldExchanger: step!, reinit! @@ -61,7 +48,7 @@ multiple dispatch on `surface_fluxes`. struct CoupledAtmosphere{FT} <: AbstractAtmosphericDrivers{FT} end """ - surface_fluxes(atmos::CoupledAtmosphere{FT}, + ClimaLSM.turbulent_fluxes(atmos::CoupledAtmosphere{FT}, model::BucketModel{FT}, Y, p, @@ -75,7 +62,7 @@ The turbulent energy flux is currently not split up between latent and sensible heat fluxes. This will be fixed once `lhf` and `shf` are added to the bucket's cache. """ -function ClimaLSM.Bucket.surface_fluxes( +function ClimaLSM.turbulent_fluxes( atmos::CoupledAtmosphere{FT}, model::BucketModel{FT}, Y, @@ -92,7 +79,7 @@ function ClimaLSM.Bucket.surface_fluxes( end """ - net_radiation(radiation::CoupledRadiativeFluxes{FT}, + ClimaLSM.net_radiation(radiation::CoupledRadiativeFluxes{FT}, model::BucketModel{FT}, Y, p, @@ -101,7 +88,7 @@ end Computes the net radiative flux at the ground for a coupled simulation. """ -function ClimaLSM.Bucket.net_radiation( +function ClimaLSM.net_radiation( radiation::CoupledRadiativeFluxes{FT}, model::BucketModel{FT}, Y::ClimaCore.Fields.FieldVector, @@ -124,7 +111,7 @@ end an extension of the bucket model method which returns the surface air density in the case of a coupled simulation. """ -function surface_air_density( +function ClimaLSM.surface_air_density( atmos::CoupledAtmosphere{FT}, model::BucketModel{FT}, Y, @@ -135,25 +122,41 @@ function surface_air_density( end """ - ClimaLSM.Bucket.liquid_precipitation(atmos::CoupledAtmosphere, p, t) + ClimaLSM.liquid_precipitation(atmos::CoupledAtmosphere, p, t) an extension of the bucket model method which returns the precipitation (m/s) in the case of a coupled simulation. """ -function liquid_precipitation(atmos::CoupledAtmosphere, p, t) +function ClimaLSM.liquid_precipitation(atmos::CoupledAtmosphere, p, t) # coupler has filled this in - return p.bucket.P_liq + return p.drivers.P_liq end """ - ClimaLSM.Bucket.snow_precipitation(atmos::CoupledAtmosphere, p, t) + ClimaLSM.snow_precipitation(atmos::CoupledAtmosphere, p, t) an extension of the bucket model method which returns the precipitation (m/s) in the case of a coupled simulation. """ -function snow_precipitation(atmos::CoupledAtmosphere, p, t) +function ClimaLSM.snow_precipitation(atmos::CoupledAtmosphere, p, t) # coupler has filled this in - return p.bucket.P_snow + return p.drivers.P_snow +end + +function ClimaLSM.initialize_drivers(a::CoupledAtmosphere{FT}, coords) where {FT} + keys = (:P_liq, :P_snow) + types = ([FT for k in keys]...,) + domain_names = ([:surface for k in keys]...,) + model_name = :drivers + # intialize_vars packages the variables as a named tuple, + # as part of a named tuple with `model_name` as the key. + # Here we just want the variable named tuple itself + vars = ClimaLSM.initialize_vars(keys, types, domain_names, coords, model_name) + return vars.drivers +end + +function ClimaLSM.initialize_drivers(a::CoupledRadiativeFluxes{FT}, coords) where {FT} + return (;) end """ @@ -244,28 +247,20 @@ function bucket_init( T_sfc_0 + ΔT end - Y.bucket.W .= 10#0.14 + Y.bucket.W .= 10.0 Y.bucket.Ws .= 0.0 Y.bucket.σS .= 0.0 - P_liq = zeros(axes(Y.bucket.W)) .+ FT(0.0) - P_snow = zeros(axes(Y.bucket.W)) .+ FT(0.0) - variable_names = (propertynames(p.bucket)..., :P_liq, :P_snow) - orig_fields = map(x -> getproperty(p.bucket, x), propertynames(p.bucket)) - fields = (orig_fields..., P_liq, P_snow) - p_new = (; - :bucket => (; zip(variable_names, fields)...), - :dss_buffer_2d => p.dss_buffer_2d, - :dss_buffer_3d => p.dss_buffer_3d, - ) # Set initial aux variable values - set_initial_aux_state! = make_set_initial_aux_state(model) - set_initial_aux_state!(p_new, Y, tspan[1]) + set_initial_cache! = make_set_initial_cache(model) + set_initial_cache!(p, Y, tspan[1]) + + @show propertynames(p) exp_tendency! = make_exp_tendency(model) ode_algo = CTS.ExplicitAlgorithm(stepper) bucket_ode_function = CTS.ClimaODEFunction(T_exp! = exp_tendency!, dss! = ClimaLSM.dss!) - prob = ODEProblem(bucket_ode_function, Y, tspan, p_new) + prob = ODEProblem(bucket_ode_function, Y, tspan, p) integrator = init(prob, ode_algo; dt = dt, saveat = saveat, adaptive = false) sim = BucketSimulation(model, Y, (; domain = domain, soil_depth = d_soil), integrator, area_fraction) diff --git a/experiments/AMIP/components/land/bucket_utils.jl b/experiments/AMIP/components/land/bucket_utils.jl index f63cb1efc6..8b18215f07 100644 --- a/experiments/AMIP/components/land/bucket_utils.jl +++ b/experiments/AMIP/components/land/bucket_utils.jl @@ -61,11 +61,11 @@ function update_field!(sim::BucketSimulation, ::Val{:radiative_energy_flux}, fie end function update_field!(sim::BucketSimulation, ::Val{:liquid_precipitation}, field) ρ_liq = (LSMP.ρ_cloud_liq(sim.model.parameters.earth_param_set)) - parent(sim.integrator.p.bucket.P_liq) .= parent(field ./ ρ_liq) + parent(sim.integrator.p.drivers.P_liq) .= parent(field ./ ρ_liq) end function update_field!(sim::BucketSimulation, ::Val{:snow_precipitation}, field) ρ_liq = (LSMP.ρ_cloud_liq(sim.model.parameters.earth_param_set)) - parent(sim.integrator.p.bucket.P_snow) .= parent(field ./ ρ_liq) + parent(sim.integrator.p.drivers.P_snow) .= parent(field ./ ρ_liq) end function update_field!(sim::BucketSimulation, ::Val{:air_density}, field) diff --git a/experiments/AMIP/coupler_driver.jl b/experiments/AMIP/coupler_driver.jl index c72ed66ef7..0cebcba26e 100644 --- a/experiments/AMIP/coupler_driver.jl +++ b/experiments/AMIP/coupler_driver.jl @@ -23,7 +23,7 @@ This driver contains two modes. The full `AMIP` mode and a `SlabPlanet` (all sur Before starting Julia, ensure your environment is properly set up: ```julia module purge -module load julia/1.9.4 openmpi/4.1.1 hdf5/1.12.1-ompi411 #netcdf-c/4.6.1 +module load julia/1.10.0 export CLIMACORE_DISTRIBUTED="MPI" #include if using MPI, otherwise leave empty export JUlIA_MPI_BINARY="system" diff --git a/experiments/ClimaCore/Manifest.toml b/experiments/ClimaCore/Manifest.toml index e885dd5119..f6f0673181 100644 --- a/experiments/ClimaCore/Manifest.toml +++ b/experiments/ClimaCore/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.4" +julia_version = "1.10.0" manifest_format = "2.0" project_hash = "5e0df4999ede0313dd9573cfd3f81b6175d3fdd5" [[deps.ADTypes]] -git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.5" +version = "0.2.6" [[deps.AMD]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -43,9 +43,9 @@ weakdeps = ["StaticArrays"] [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.1" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -69,9 +69,9 @@ version = "0.2.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "247efbccf92448be332d154d6ca56b9fcdd93c31" +git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.6.1" +version = "7.7.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -91,9 +91,9 @@ version = "7.6.1" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" +git-tree-sha1 = "a45ec4acc9d905f94b47243cff666820bb107789" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.3" +version = "1.5.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -122,9 +122,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] @@ -134,9 +134,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "06a2a94d5a4979c36cc7a3c28d70800f448ae5bb" +git-tree-sha1 = "27baf04c642465b4289179f29bb7127f0673d4f1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.3.0" +version = "1.4.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -158,15 +158,15 @@ version = "0.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "54cd829dd26330c42e1cf9df68470dd4df602c61" +git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.38" +version = "0.16.39" [[deps.BoundaryValueDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "Tricks", "TruncatedStacktraces", "UnPack"] -git-tree-sha1 = "8a19e2457da8a7e5ae54ee9479885738d8fd926b" +deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "ForwardDiff", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "Tricks", "TruncatedStacktraces", "UnPack"] +git-tree-sha1 = "dd234c9a030350d5ff4c45761d6cad0cfb358cb9" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.4.0" +version = "5.6.0" [deps.BoundaryValueDiffEq.extensions] BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" @@ -178,9 +178,9 @@ version = "5.4.0" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" @@ -249,9 +249,9 @@ version = "0.2.2" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" +git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.18.0" +version = "1.19.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -259,9 +259,9 @@ weakdeps = ["SparseArrays"] [[deps.ClimaAtmos]] deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Test", "Thermodynamics", "YAML"] -git-tree-sha1 = "468d3045770744ac071b0331a0cfc997cc57642c" +git-tree-sha1 = "c56a1c62b724a349cdbd75e27adfe6fe6f51063d" uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.17.2" +version = "0.18.0" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] @@ -270,10 +270,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" version = "0.5.6" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"] -git-tree-sha1 = "37b3034ab1cfd137e3b014f963d5f1c8e775c38e" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.3" +version = "0.11.8" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -349,10 +349,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "75bd5b6fc5089df449b5d35fa501c846c9b6549b" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.1" +version = "4.12.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -361,7 +361,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.0.5+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -433,9 +433,9 @@ version = "1.15.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "ac67408d9ddf207de5cfa9a97e114352430f01ed" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.16" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -448,9 +448,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "df712c77bb43b37ea966feb72cb2e92d51a3face" +git-tree-sha1 = "e40378efd2af7658d0a0579aa9e15b17137368f4" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.43.1" +version = "5.44.0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -472,9 +472,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "309efb205c30d43b595466283bbecf2769283e22" +git-tree-sha1 = "05b19d9101db42afeb02d1f402d5e9a7986c44f7" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.141.0" +version = "6.145.2" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -502,16 +502,16 @@ version = "6.141.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "4e4de57a0ac47b2f20aae62f132355b058e9f0cd" +git-tree-sha1 = "d0b94b3694d55e7eedeee918e7daee9e3b873399" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.34.0" +version = "2.35.0" weakdeps = ["OrdinaryDiffEq", "Sundials"] [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "57ed4597a309c5b2a10cab5f9813adcb78f92117" +git-tree-sha1 = "319377c927a4aa1f491228b2ac23f3554a3497c6" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.19.0" +version = "5.20.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -554,9 +554,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.103" +version = "0.25.107" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -596,10 +596,13 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -deps = ["Adapt"] -git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b" +git-tree-sha1 = "59c44d8fbc651c0395d8a6eda64b05ce316f58b4" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.4" +version = "0.6.5" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -609,9 +612,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -650,9 +653,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -660,6 +663,12 @@ git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" +[[deps.FastAlmostBandedMatrices]] +deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"] +git-tree-sha1 = "178316d87f883f0702e79d9c83a8049484c9f619" +uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" +version = "0.1.0" + [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" @@ -673,9 +682,9 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f" +git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.0" +version = "1.0.2" [[deps.FastLapackInterface]] deps = ["LinearAlgebra"] @@ -685,18 +694,18 @@ version = "2.0.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "25a10f2b86118664293062705fd9c7e2eda881a2" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.2" +version = "1.9.3" weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -706,9 +715,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" +version = "2.22.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -782,10 +791,10 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] @@ -879,10 +888,10 @@ weakdeps = ["MPI"] MPIExt = "MPI" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.2+1" +version = "1.14.3+0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -944,9 +953,9 @@ version = "0.1.4" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "ec703ca8951d6beb6ca68988044c7c377d14a244" +git-tree-sha1 = "2679907708edd9bbe2bd98585e575b48f17902c8" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.8.1" +version = "0.8.2" [[deps.IntegerMathUtils]] git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" @@ -955,9 +964,9 @@ version = "0.1.2" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b" +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -965,9 +974,13 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] deps = ["Dates", "Statistics"] @@ -999,9 +1012,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730" +git-tree-sha1 = "315b508ec5df53936532097ffe6e5deacbf41861" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.38" +version = "0.4.44" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1023,15 +1036,21 @@ version = "0.21.4" [[deps.JSON3]] deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] -git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3" +git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.13.2" +version = "1.14.0" + + [deps.JSON3.extensions] + JSON3ArrowExt = ["ArrowTypes"] + + [deps.JSON3.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.1+0" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1041,9 +1060,9 @@ version = "0.2.1+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] -git-tree-sha1 = "e047c47fca2ac1ac687e006a257f96632fb95a7b" +git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.9.0" +version = "9.10.1" weakdeps = ["FastBroadcast"] [deps.JumpProcesses.extensions] @@ -1057,9 +1076,9 @@ version = "0.4.1" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "81de11f7b02465435aab0ed7e935965bfcb3072b" +git-tree-sha1 = "4e0cb2f5aad44dcfdc91088e85dee4ecb22c791c" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.14" +version = "0.9.16" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -1067,9 +1086,9 @@ weakdeps = ["EnzymeCore"] [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.4" +version = "0.9.5" [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] @@ -1097,9 +1116,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "0678579657515e88b6632a3a482d39adcbb80445" +git-tree-sha1 = "cb4619f7353fc62a1a22ffa3d7ed9791cfb47ad8" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.4.1" +version = "6.4.2" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -1112,10 +1131,10 @@ uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" version = "0.0.27+1" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1160,6 +1179,16 @@ git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" version = "0.15.1" +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "9cfca23ab83b0dfac93cb1a1ef3331ab9fe596a5" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.8.3" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1187,9 +1216,14 @@ uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" @@ -1257,10 +1291,14 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "a58ab1d18efa0bcf9f0868c6d387e4126dad3e72" +deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "58e2ca62646a62e18f86253b9c2a2d821c2d934b" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.5.2" +version = "2.6.0" +weakdeps = ["ChainRulesCore"] + + [deps.LinearOperators.extensions] + LinearOperatorsChainRulesCoreExt = "ChainRulesCore" [[deps.LinearSolve]] deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "UnPack"] @@ -1333,10 +1371,10 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] SpecialFunctionsExt = "SpecialFunctions" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1354,9 +1392,9 @@ version = "0.20.19" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" +git-tree-sha1 = "2ee75365ca243c1a39d467e35ffd3d4d32eef11e" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.1.2+0" +version = "4.1.2+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1366,15 +1404,15 @@ version = "0.1.10" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "6979eccb6a9edbbb62681e158443e79ecc0d056a" +git-tree-sha1 = "8eeb3c73bbc0ca203d0dc8dad4008350bbe5797b" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.3.1+0" +version = "5.3.1+1" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1390,6 +1428,12 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MatrixFactorizations]] +deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "78f6e33434939b0ac9ba1df81e6d005ee85a7396" +uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" +version = "2.1.0" + [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" @@ -1399,19 +1443,13 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" -[[deps.Memoize]] -deps = ["MacroTools"] -git-tree-sha1 = "2b1dfcba103de714d31c033b5dacc2e4a12c7caa" -uuid = "c03570c3-d221-55d1-a50c-7939bbd78826" -version = "0.4.4" - [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "b01beb91d20b0d1312a9471a36017b5b339d26de" @@ -1435,7 +1473,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1462,9 +1500,9 @@ version = "4.5.1" [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] -git-tree-sha1 = "8bc9ce4233be3c63f8dcd78ccaf1b63a9c0baa34" +git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f" -version = "0.3.3" +version = "0.3.4" [[deps.NVTX_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1511,10 +1549,13 @@ uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" version = "0.88.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1525,12 +1566,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+2" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1582,13 +1623,13 @@ version = "6.59.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "4e5be6bb265d33669f98eb55d2a57addd1eeb72c" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.30" +version = "0.11.31" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1610,15 +1651,15 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.0" +version = "2.8.1" [[deps.PencilArrays]] deps = ["Adapt", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "StaticArrayInterface", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"] -git-tree-sha1 = "1a473d028436947e08436275ff3fcc2f3e9c5b06" +git-tree-sha1 = "6510e851700a851944f7ffa5cd990cced4802ad2" uuid = "0e08944d-e94e-41b1-9406-dcf66b6a9d2e" -version = "0.19.2" +version = "0.19.3" weakdeps = ["DiffEqBase", "HDF5"] [deps.PencilArrays.extensions] @@ -1645,7 +1686,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1661,9 +1702,9 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] @@ -1710,10 +1751,10 @@ uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] -git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "64bb68f76f789f5fe5930a80af310f19cdafeaed" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.12" +version = "0.4.17" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1769,9 +1810,9 @@ version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.QuasiMonteCarlo]] deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] @@ -1800,14 +1841,14 @@ uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" version = "0.10.0" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.6.2" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1937,9 +1978,9 @@ version = "0.6.42" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d432b4c4cc922fb7b21b555c138aa87f9fb7beb8" +git-tree-sha1 = "32ea825941f7b58a6f48268f4b76971ae8eb9eec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.9.1" +version = "2.10.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2039,19 +2080,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.0" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "07272c80c278947baca092df0a01da4a10622ad5" +git-tree-sha1 = "c281e11db4eacb36a292a054bac83c5a0aca2a26" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.13.0" +version = "2.15.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -2093,9 +2135,9 @@ version = "0.8.8" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25" +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.1" +version = "1.5.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2104,12 +2146,13 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" +git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.7.0" -weakdeps = ["Statistics"] +version = "1.9.1" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -2125,7 +2168,7 @@ version = "0.3.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2157,10 +2200,10 @@ uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" version = "1.16.1" [[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "7a71f1e67cbcfcd5387707e6621431d1afff62a9" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "753219de57ac7aab0feb88871d3c51e0eb5e3b03" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.63.2" +version = "6.64.0" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] @@ -2176,9 +2219,9 @@ version = "2.0.4" [[deps.StridedViews]] deps = ["LinearAlgebra", "PackageExtensionCompat"] -git-tree-sha1 = "cf857ff7de76f39e5daef6d032e8a74279ddff6a" +git-tree-sha1 = "5b765c4e401693ab08981989f74a36a010aa1d8e" uuid = "4db3bf67-4bd7-4b4e-b153-31dc3fb37143" -version = "0.2.1" +version = "0.2.2" weakdeps = ["CUDA"] [deps.StridedViews.extensions] @@ -2213,9 +2256,9 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] @@ -2224,16 +2267,16 @@ uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" version = "4.20.1" [[deps.Sundials_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] -git-tree-sha1 = "04777432d74ec5bc91ca047c9e0e0fd7f81acdb6" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] +git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" -version = "5.2.1+0" +version = "5.2.2+0" [[deps.SurfaceFluxes]] -deps = ["CLIMAParameters", "DocStringExtensions", "Logging", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "7f83013a0654d6504226d93ba0cba94d94e1b0b0" +deps = ["CLIMAParameters", "DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "a167924897731ee57ef0197bb19357bfc2d007bc" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.8.0" +version = "0.8.1" [[deps.SymbolicIndexingInterface]] deps = ["DocStringExtensions"] @@ -2391,6 +2434,12 @@ git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" version = "1.6.3" +[[deps.Unrolled]] +deps = ["MacroTools"] +git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" +uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" +version = "0.1.5" + [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -2438,26 +2487,21 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakValueDicts]] -git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" -uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" -version = "0.1.0" +version = "1.31.0+0" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.6" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "da69178aacc095066bad1f69d2f59a60a1dd8ad1" +git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.0+0" +version = "2.12.2+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2624,7 +2668,7 @@ version = "0.4.9" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2671,7 +2715,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2692,10 +2736,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "f7c281e9c61905521993a987d38b5ab1d4b53bef" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+1" +version = "1.6.40+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2717,7 +2761,7 @@ version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/experiments/ClimaCore/sea_breeze/Manifest.toml b/experiments/ClimaCore/sea_breeze/Manifest.toml index 5c9e8b4543..a5543b1ce6 100644 --- a/experiments/ClimaCore/sea_breeze/Manifest.toml +++ b/experiments/ClimaCore/sea_breeze/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.4" +julia_version = "1.10.0" manifest_format = "2.0" project_hash = "3410fb43c22f219f7d863bac9a2a7bee34357166" [[deps.ADTypes]] -git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.5" +version = "0.2.6" [[deps.AMD]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -31,35 +31,21 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.33" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.1" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + [[deps.ArgParse]] deps = ["Logging", "TextWrap"] git-tree-sha1 = "3102bce13da501c9104df33549f511cd25264d7d" @@ -72,9 +58,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "247efbccf92448be332d154d6ca56b9fcdd93c31" +git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.6.1" +version = "7.7.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -94,9 +80,9 @@ version = "7.6.1" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" +git-tree-sha1 = "a45ec4acc9d905f94b47243cff666820bb107789" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.3" +version = "1.5.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -125,9 +111,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] @@ -137,17 +123,42 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "06a2a94d5a4979c36cc7a3c28d70800f448ae5bb" +git-tree-sha1 = "27baf04c642465b4289179f29bb7127f0673d4f1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.3.0" +version = "1.4.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] BandedMatricesSparseArraysExt = "SparseArrays" +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.39" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + [[deps.BitFlags]] git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -161,20 +172,20 @@ version = "0.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "54cd829dd26330c42e1cf9df68470dd4df602c61" +git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.38" +version = "0.16.39" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" +version = "0.4.2" [[deps.CFTime]] deps = ["Dates", "Printf"] @@ -194,11 +205,17 @@ git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.4" +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.12" + [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "76582ae19006b1186e87dadd781747f76cead72c" +git-tree-sha1 = "95ac638373ac40e29c1b6d086a3698f5026ff6a6" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.1.1" +version = "5.1.2" weakdeps = ["ChainRulesCore", "SpecialFunctions"] [deps.CUDA.extensions] @@ -207,9 +224,9 @@ weakdeps = ["ChainRulesCore", "SpecialFunctions"] [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "1e42ef1bdb45487ff28de16182c0df4920181dc3" +git-tree-sha1 = "d01bfc999768f0a31ed36f5d22a76161fc63079c" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.7.0+0" +version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -223,6 +240,12 @@ git-tree-sha1 = "9704e50c9158cf8896c2776b8dbc5edd136caf80" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" version = "0.10.1+0" +[[deps.CUDNN_jll]] +deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "75923dce4275ead3799b238e10178a68c07dbd3b" +uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" +version = "8.9.4+0" + [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" @@ -235,21 +258,27 @@ git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc" uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "0aa0a3dd7b9bacbbadf1932ccbdfa938985c5561" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.58.1" + [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" +git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.18.0" +version = "1.19.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ClimaAtmos]] -deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Test", "Thermodynamics", "YAML"] -git-tree-sha1 = "468d3045770744ac071b0331a0cfc997cc57642c" +deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"] +git-tree-sha1 = "26ca63e394aff8db2b30f18bc66decdbe771d4fa" uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.17.2" +version = "0.19.0" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] @@ -258,20 +287,20 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" version = "0.5.6" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"] -git-tree-sha1 = "37b3034ab1cfd137e3b014f963d5f1c8e775c38e" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.3" +version = "0.11.8" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] KrylovExt = "Krylov" [[deps.ClimaCoreTempestRemap]] -deps = ["ClimaComms", "ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] -git-tree-sha1 = "325a709968ce6c3c284c4b9a79f9f614dcd1131c" +deps = ["ClimaComms", "ClimaCore", "CommonDataModel", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] +git-tree-sha1 = "da5726ce5a79ec27a95bd6d4f178bd4022ca8f39" uuid = "d934ef94-cdd4-4710-83d6-720549644b70" -version = "0.3.11" +version = "0.3.12" [[deps.ClimaCoupler]] deps = ["CLIMAParameters", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "ClimaLSM", "Dates", "DocStringExtensions", "Insolation", "JLD2", "NCDatasets", "Plots", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "Thermodynamics"] @@ -280,10 +309,10 @@ uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.0" [[deps.ClimaLSM]] -deps = ["ArtifactWrappers", "CFTime", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "DocStringExtensions", "IntervalSets", "JLD2", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] -git-tree-sha1 = "5de9154317c208ab4bc96ce7a8847010a40bf03d" +deps = ["ArtifactWrappers", "CFTime", "CSV", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "DataFrames", "Dates", "DocStringExtensions", "Flux", "HTTP", "IntervalSets", "JLD2", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "StatsBase", "SurfaceFluxes", "Thermodynamics", "cuDNN"] +git-tree-sha1 = "7f05edc3f421394f8ffb810ea4da5f4764c20628" uuid = "7884a58f-fab6-4fd0-82bb-ecfedb2d8430" -version = "0.4.1" +version = "0.5.0" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] @@ -355,10 +384,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "75bd5b6fc5089df449b5d35fa501c846c9b6549b" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.1" +version = "4.12.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -367,27 +396,24 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.0.5+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" version = "0.1.2" -weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [deps.CompositionsBase.weakdeps] + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.ComputationalResources]] git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" version = "0.3.2" -[[deps.ConcreteStructs]] -git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" -uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" -version = "0.2.3" - [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" @@ -405,6 +431,12 @@ weakdeps = ["IntervalSets", "StaticArrays"] ConstructionBaseIntervalSetsExt = "IntervalSets" ConstructionBaseStaticArraysExt = "StaticArrays" +[[deps.ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.3" + [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" @@ -445,9 +477,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "ac67408d9ddf207de5cfa9a97e114352430f01ed" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.16" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -458,6 +490,11 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" @@ -478,9 +515,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "309efb205c30d43b595466283bbecf2769283e22" +git-tree-sha1 = "6af33c2eb7478db06bcf5c810e6f3dda53aac2ac" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.141.0" +version = "6.146.0" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -508,9 +545,9 @@ version = "6.141.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "4e4de57a0ac47b2f20aae62f132355b058e9f0cd" +git-tree-sha1 = "cf334da651a6e42c50e1477d6ab978f1b8be3057" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.34.0" +version = "2.36.1" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -571,10 +608,13 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -deps = ["Adapt"] -git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b" +git-tree-sha1 = "59c44d8fbc651c0395d8a6eda64b05ce316f58b4" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.4" +version = "0.6.5" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -584,9 +624,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -619,9 +659,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -629,6 +669,18 @@ git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" +[[deps.FLoops]] +deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] +git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" +uuid = "cc61a311-1640-44b5-9fba-1b764f453329" +version = "0.2.1" + +[[deps.FLoopsBase]] +deps = ["ContextVariablesX"] +git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" +uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" +version = "0.1.1" + [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" @@ -642,24 +694,30 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f" +git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.0" +version = "1.0.2" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "01dba5dbad6b2766e2ddd7b9d64af0e6d68d95cd" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.1" +version = "1.9.3" [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" @@ -673,9 +731,9 @@ version = "1.9.1" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" +version = "2.22.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -693,6 +751,24 @@ git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" +[[deps.Flux]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "2827339fbc2291d541a9c62ffbf28da7f3621ae4" +uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" +version = "0.14.9" + + [deps.Flux.extensions] + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] + FluxMetalExt = "Metal" + + [deps.Flux.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" @@ -749,10 +825,10 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] @@ -829,10 +905,10 @@ weakdeps = ["MPI"] MPIExt = "MPI" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.2+1" +version = "1.14.3+0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -846,6 +922,12 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" +[[deps.IRTools]] +deps = ["InteractiveUtils", "MacroTools", "Test"] +git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d" +uuid = "7869d1d1-7146-5819-86e3-90919afe41df" +version = "0.4.11" + [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -869,6 +951,11 @@ git-tree-sha1 = "432ae2b430a18c58eb7eca9ef8d0f2db90bc749c" uuid = "6a3955dd-da59-5b1f-98d4-e7296123deb5" version = "0.7.8" +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + [[deps.InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" @@ -877,20 +964,15 @@ version = "1.4.0" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "937658520f9d5786ea11b70713163fe277925492" +git-tree-sha1 = "2679907708edd9bbe2bd98585e575b48f17902c8" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.8.0" - -[[deps.IntegerMathUtils]] -git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" -uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.2" +version = "0.8.2" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b" +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -898,9 +980,13 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] deps = ["Dates", "Random"] @@ -912,12 +998,6 @@ weakdeps = ["Statistics"] [deps.IntervalSets.extensions] IntervalSetsStatisticsExt = "Statistics" -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" @@ -935,9 +1015,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730" +git-tree-sha1 = "315b508ec5df53936532097ffe6e5deacbf41861" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.38" +version = "0.4.44" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -959,9 +1039,9 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.1+0" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -969,11 +1049,17 @@ git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" +[[deps.JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" + [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "b0737cbbe1c8da6f1139d1c23e35e7cea129c0af" +git-tree-sha1 = "4e0cb2f5aad44dcfdc91088e85dee4ecb22c791c" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.13" +version = "0.9.16" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -981,9 +1067,9 @@ weakdeps = ["EnzymeCore"] [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.4" +version = "0.9.5" [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] @@ -1011,9 +1097,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "0678579657515e88b6632a3a482d39adcbb80445" +git-tree-sha1 = "cb4619f7353fc62a1a22ffa3d7ed9791cfb47ad8" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.4.1" +version = "6.4.2" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -1031,10 +1117,10 @@ uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586" version = "1.0.0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1061,12 +1147,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.LatticeRules]] -deps = ["Random"] -git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" -uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" -version = "0.0.1" - [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" @@ -1100,9 +1180,14 @@ uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" @@ -1170,10 +1255,14 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "a58ab1d18efa0bcf9f0868c6d387e4126dad3e72" +deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "58e2ca62646a62e18f86253b9c2a2d821c2d934b" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.5.2" +version = "2.6.0" +weakdeps = ["ChainRulesCore"] + + [deps.LinearOperators.extensions] + LinearOperatorsChainRulesCoreExt = "ChainRulesCore" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1201,10 +1290,21 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" + +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" + +[[deps.MLUtils]] +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" +uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" +version = "0.4.4" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1222,9 +1322,9 @@ version = "0.20.19" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" +git-tree-sha1 = "2ee75365ca243c1a39d467e35ffd3d4d32eef11e" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.1.2+0" +version = "4.1.2+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1234,15 +1334,15 @@ version = "0.1.10" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "6979eccb6a9edbbb62681e158443e79ecc0d056a" +git-tree-sha1 = "8eeb3c73bbc0ca203d0dc8dad4008350bbe5797b" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.3.1+0" +version = "5.3.1+1" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1267,18 +1367,18 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" -[[deps.Memoize]] -deps = ["MacroTools"] -git-tree-sha1 = "2b1dfcba103de714d31c033b5dacc2e4a12c7caa" -uuid = "c03570c3-d221-55d1-a50c-7939bbd78826" -version = "0.4.4" +[[deps.MicroCollections]] +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.1.4" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1303,7 +1403,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1312,9 +1412,9 @@ version = "0.2.4" [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "7fcb4378f9c648a186bcb996fa29acc929a179ed" +git-tree-sha1 = "173a378f357e9bb24b22019efb5e4778223ce8cf" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.13.1" +version = "0.13.2" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1328,11 +1428,29 @@ git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.5.1" +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "900a11b3a2b02e36b25cb55a80777d4a4670f0f6" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.10" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] -git-tree-sha1 = "8bc9ce4233be3c63f8dcd78ccaf1b63a9c0baa34" +git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f" -version = "0.3.3" +version = "0.3.4" [[deps.NVTX_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1346,6 +1464,12 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NameResolution]] +deps = ["PrettyPrint"] +git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" +uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" +version = "0.1.5" + [[deps.NetCDF_jll]] deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1" @@ -1357,10 +1481,13 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1368,21 +1495,27 @@ git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" +[[deps.OneHotArrays]] +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" +uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" +version = "0.2.4" + [[deps.OpenBLAS32_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "2fb9ee2dc14d555a6df2a714b86b7125178344c2" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.21+0" +version = "0.3.24+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+2" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1408,6 +1541,12 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.1" + [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" @@ -1422,7 +1561,7 @@ version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PaddedViews]] deps = ["OffsetArrays"] @@ -1438,9 +1577,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.0" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1456,7 +1595,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1472,9 +1611,9 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] @@ -1515,10 +1654,10 @@ uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" version = "1.4.3" [[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] -git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "64bb68f76f789f5fe5930a80af310f19cdafeaed" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.12" +version = "0.4.17" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1538,18 +1677,17 @@ git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" +[[deps.PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" version = "2.3.1" -[[deps.Primes]] -deps = ["IntegerMathUtils"] -git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" -uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.5" - [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -1572,18 +1710,6 @@ git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.5.3+1" -[[deps.QuasiMonteCarlo]] -deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] -git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" -uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.3.3" - - [deps.QuasiMonteCarlo.extensions] - QuasiMonteCarloDistributionsExt = "Distributions" - - [deps.QuasiMonteCarlo.weakdeps] - Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" - [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1595,14 +1721,14 @@ uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" version = "0.10.0" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.6.2" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1620,6 +1746,12 @@ weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + [[deps.RecipesBase]] deps = ["PrecompileTools"] git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" @@ -1633,18 +1765,20 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "3.5.4" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -1689,10 +1823,10 @@ uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d432b4c4cc922fb7b21b555c138aa87f9fb7beb8" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "ad711463cb386572f33f6209464d8dca5a081247" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.9.1" +version = "2.19.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1742,6 +1876,11 @@ version = "1.1.1" deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +[[deps.ShowCases]] +git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" +uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" +version = "0.1.0" + [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -1753,24 +1892,31 @@ git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" -[[deps.Sobol]] -deps = ["DelimitedFiles", "Random"] -git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" -uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" -version = "1.5.0" +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.0" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1782,6 +1928,12 @@ weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + [[deps.StackViews]] deps = ["OffsetArrays"] git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" @@ -1796,9 +1948,9 @@ version = "0.8.8" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25" +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.1" +version = "1.5.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -1807,12 +1959,13 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" +git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.7.0" -weakdeps = ["Statistics"] +version = "1.9.1" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1823,7 +1976,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1855,26 +2008,31 @@ git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" +[[deps.StructArrays]] +deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] +git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.16" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SurfaceFluxes]] -deps = ["CLIMAParameters", "DocStringExtensions", "Logging", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "7f83013a0654d6504226d93ba0cba94d94e1b0b0" +deps = ["CLIMAParameters", "DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "a167924897731ee57ef0197bb19357bfc2d007bc" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.8.0" +version = "0.8.1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.3" [[deps.TOML]] deps = ["Dates"] @@ -1970,6 +2128,26 @@ weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -2009,18 +2187,27 @@ deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.19.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" InverseFunctionsUnitfulExt = "InverseFunctions" + [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" version = "1.6.3" +[[deps.Unrolled]] +deps = ["MacroTools"] +git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" +uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" +version = "0.1.5" + [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -2051,26 +2238,32 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" -[[deps.WeakValueDicts]] -git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" -uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" -version = "0.1.0" +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "da69178aacc095066bad1f69d2f59a60a1dd8ad1" +git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.0+0" +version = "2.12.2+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2237,7 +2430,7 @@ version = "0.4.9" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2245,6 +2438,34 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.5+0" +[[deps.Zygote]] +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "30c1b8bfc2b3c7c5d8bba7cd32e8b6d5f968e7c3" +uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "0.6.68" + + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" + + [deps.Zygote.weakdeps] + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.cuDNN]] +deps = ["CEnum", "CUDA", "CUDA_Runtime_Discovery", "CUDNN_jll"] +git-tree-sha1 = "94f6b231d21b8a10f5c3ccc4b4009017ca922847" +uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" +version = "1.2.2" + [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" @@ -2284,7 +2505,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2305,10 +2526,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.40+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2330,7 +2551,7 @@ version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 01be49920d..ab09f1f4c3 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.4" +julia_version = "1.10.0" manifest_format = "2.0" project_hash = "bf80aa242c5f214868828f301d47a2d12b65d5f5" [[deps.ADTypes]] -git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.5" +version = "0.2.6" [[deps.AMD]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -31,35 +31,21 @@ git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.33" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.1" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + [[deps.ArgParse]] deps = ["Logging", "TextWrap"] git-tree-sha1 = "3102bce13da501c9104df33549f511cd25264d7d" @@ -72,9 +58,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "247efbccf92448be332d154d6ca56b9fcdd93c31" +git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.6.1" +version = "7.7.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -94,9 +80,9 @@ version = "7.6.1" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" +git-tree-sha1 = "a45ec4acc9d905f94b47243cff666820bb107789" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.3" +version = "1.5.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -125,9 +111,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] @@ -137,17 +123,42 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "06a2a94d5a4979c36cc7a3c28d70800f448ae5bb" +git-tree-sha1 = "27baf04c642465b4289179f29bb7127f0673d4f1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.3.0" +version = "1.4.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] BandedMatricesSparseArraysExt = "SparseArrays" +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.39" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + [[deps.BitFlags]] git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -161,20 +172,20 @@ version = "0.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "54cd829dd26330c42e1cf9df68470dd4df602c61" +git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.38" +version = "0.16.39" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" +version = "0.4.2" [[deps.CFTime]] deps = ["Dates", "Printf"] @@ -194,11 +205,17 @@ git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.4" +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.12" + [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "76582ae19006b1186e87dadd781747f76cead72c" +git-tree-sha1 = "95ac638373ac40e29c1b6d086a3698f5026ff6a6" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.1.1" +version = "5.1.2" weakdeps = ["ChainRulesCore", "SpecialFunctions"] [deps.CUDA.extensions] @@ -207,9 +224,9 @@ weakdeps = ["ChainRulesCore", "SpecialFunctions"] [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "1e42ef1bdb45487ff28de16182c0df4920181dc3" +git-tree-sha1 = "d01bfc999768f0a31ed36f5d22a76161fc63079c" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.7.0+0" +version = "0.7.0+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -223,6 +240,12 @@ git-tree-sha1 = "9704e50c9158cf8896c2776b8dbc5edd136caf80" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" version = "0.10.1+0" +[[deps.CUDNN_jll]] +deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "75923dce4275ead3799b238e10178a68c07dbd3b" +uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" +version = "8.9.4+0" + [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" @@ -235,21 +258,27 @@ git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc" uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "0aa0a3dd7b9bacbbadf1932ccbdfa938985c5561" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.58.1" + [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" +git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.18.0" +version = "1.19.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ClimaAtmos]] -deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Test", "Thermodynamics", "YAML"] -git-tree-sha1 = "468d3045770744ac071b0331a0cfc997cc57642c" +deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"] +git-tree-sha1 = "1115a9385729b0e33b1962a673e2729b1d817931" uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717" -version = "0.17.2" +version = "0.19.1" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] @@ -258,10 +287,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" version = "0.5.6" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"] -git-tree-sha1 = "37b3034ab1cfd137e3b014f963d5f1c8e775c38e" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.11.3" +version = "0.11.8" weakdeps = ["Krylov"] [deps.ClimaCore.extensions] @@ -274,10 +303,10 @@ uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" version = "0.2.6" [[deps.ClimaCoreTempestRemap]] -deps = ["ClimaComms", "ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] -git-tree-sha1 = "325a709968ce6c3c284c4b9a79f9f614dcd1131c" +deps = ["ClimaComms", "ClimaCore", "CommonDataModel", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] +git-tree-sha1 = "da5726ce5a79ec27a95bd6d4f178bd4022ca8f39" uuid = "d934ef94-cdd4-4710-83d6-720549644b70" -version = "0.3.11" +version = "0.3.12" [[deps.ClimaCoupler]] deps = ["CLIMAParameters", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "ClimaLSM", "Dates", "DocStringExtensions", "Insolation", "JLD2", "NCDatasets", "Plots", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "Thermodynamics"] @@ -286,10 +315,10 @@ uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.0" [[deps.ClimaLSM]] -deps = ["ArtifactWrappers", "CFTime", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "DocStringExtensions", "IntervalSets", "JLD2", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] -git-tree-sha1 = "5de9154317c208ab4bc96ce7a8847010a40bf03d" +deps = ["ArtifactWrappers", "CFTime", "CSV", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "DataFrames", "Dates", "DocStringExtensions", "Flux", "HTTP", "IntervalSets", "JLD2", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "StatsBase", "SurfaceFluxes", "Thermodynamics", "cuDNN"] +git-tree-sha1 = "7f05edc3f421394f8ffb810ea4da5f4764c20628" uuid = "7884a58f-fab6-4fd0-82bb-ecfedb2d8430" -version = "0.4.1" +version = "0.5.0" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] @@ -361,10 +390,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "75bd5b6fc5089df449b5d35fa501c846c9b6549b" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.1" +version = "4.12.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -373,27 +402,24 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.0.5+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" version = "0.1.2" -weakdeps = ["InverseFunctions"] [deps.CompositionsBase.extensions] CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [deps.CompositionsBase.weakdeps] + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.ComputationalResources]] git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" version = "0.3.2" -[[deps.ConcreteStructs]] -git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" -uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" -version = "0.2.3" - [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" @@ -411,6 +437,12 @@ weakdeps = ["IntervalSets", "StaticArrays"] ConstructionBaseIntervalSetsExt = "IntervalSets" ConstructionBaseStaticArraysExt = "StaticArrays" +[[deps.ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.3" + [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" @@ -451,9 +483,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "ac67408d9ddf207de5cfa9a97e114352430f01ed" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.16" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -464,6 +496,11 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" @@ -484,9 +521,9 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "b983d7e2b869375c74b1197fb65209b6f528d28f" +git-tree-sha1 = "6af33c2eb7478db06bcf5c810e6f3dda53aac2ac" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.141.1" +version = "6.146.0" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -514,9 +551,9 @@ version = "6.141.1" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "4e4de57a0ac47b2f20aae62f132355b058e9f0cd" +git-tree-sha1 = "cf334da651a6e42c50e1477d6ab978f1b8be3057" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.34.0" +version = "2.36.1" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -577,10 +614,13 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -deps = ["Adapt"] -git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b" +git-tree-sha1 = "59c44d8fbc651c0395d8a6eda64b05ce316f58b4" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.4" +version = "0.6.5" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -590,9 +630,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -625,9 +665,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -635,6 +675,18 @@ git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" +[[deps.FLoops]] +deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] +git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" +uuid = "cc61a311-1640-44b5-9fba-1b764f453329" +version = "0.2.1" + +[[deps.FLoopsBase]] +deps = ["ContextVariablesX"] +git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" +uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" +version = "0.1.1" + [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" @@ -648,24 +700,30 @@ version = "0.3.2" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f" +git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.0" +version = "1.0.2" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "25a10f2b86118664293062705fd9c7e2eda881a2" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.2" +version = "1.9.3" [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" @@ -679,9 +737,9 @@ version = "1.9.2" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" +version = "2.22.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -699,6 +757,24 @@ git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" +[[deps.Flux]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "2827339fbc2291d541a9c62ffbf28da7f3621ae4" +uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" +version = "0.14.9" + + [deps.Flux.extensions] + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] + FluxMetalExt = "Metal" + + [deps.Flux.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" @@ -755,10 +831,10 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] @@ -840,10 +916,10 @@ weakdeps = ["MPI"] MPIExt = "MPI" [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.2+1" +version = "1.14.3+0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] @@ -857,6 +933,12 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" +[[deps.IRTools]] +deps = ["InteractiveUtils", "MacroTools", "Test"] +git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d" +uuid = "7869d1d1-7146-5819-86e3-90919afe41df" +version = "0.4.11" + [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -880,6 +962,11 @@ git-tree-sha1 = "432ae2b430a18c58eb7eca9ef8d0f2db90bc749c" uuid = "6a3955dd-da59-5b1f-98d4-e7296123deb5" version = "0.7.8" +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + [[deps.InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" @@ -888,20 +975,15 @@ version = "1.4.0" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "ec703ca8951d6beb6ca68988044c7c377d14a244" +git-tree-sha1 = "2679907708edd9bbe2bd98585e575b48f17902c8" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.8.1" - -[[deps.IntegerMathUtils]] -git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" -uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.2" +version = "0.8.2" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b" +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -909,9 +991,13 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] deps = ["Dates", "Random"] @@ -923,12 +1009,6 @@ weakdeps = ["Statistics"] [deps.IntervalSets.extensions] IntervalSetsStatisticsExt = "Statistics" -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" @@ -946,9 +1026,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730" +git-tree-sha1 = "315b508ec5df53936532097ffe6e5deacbf41861" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.38" +version = "0.4.44" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -970,9 +1050,9 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.1+0" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -980,11 +1060,17 @@ git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" +[[deps.JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" + [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "81de11f7b02465435aab0ed7e935965bfcb3072b" +git-tree-sha1 = "4e0cb2f5aad44dcfdc91088e85dee4ecb22c791c" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.14" +version = "0.9.16" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -992,9 +1078,9 @@ weakdeps = ["EnzymeCore"] [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.4" +version = "0.9.5" [[deps.KrylovKit]] deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] @@ -1022,9 +1108,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "0678579657515e88b6632a3a482d39adcbb80445" +git-tree-sha1 = "cb4619f7353fc62a1a22ffa3d7ed9791cfb47ad8" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.4.1" +version = "6.4.2" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -1042,10 +1128,10 @@ uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586" version = "1.0.0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1072,12 +1158,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.LatticeRules]] -deps = ["Random"] -git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" -uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" -version = "0.0.1" - [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" @@ -1111,9 +1191,14 @@ uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" @@ -1181,10 +1266,14 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "a58ab1d18efa0bcf9f0868c6d387e4126dad3e72" +deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "58e2ca62646a62e18f86253b9c2a2d821c2d934b" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.5.2" +version = "2.6.0" +weakdeps = ["ChainRulesCore"] + + [deps.LinearOperators.extensions] + LinearOperatorsChainRulesCoreExt = "ChainRulesCore" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1212,10 +1301,21 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" + +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" + +[[deps.MLUtils]] +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" +uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" +version = "0.4.4" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1233,9 +1333,9 @@ version = "0.20.19" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83" +git-tree-sha1 = "2ee75365ca243c1a39d467e35ffd3d4d32eef11e" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.1.2+0" +version = "4.1.2+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1245,15 +1345,15 @@ version = "0.1.10" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "6979eccb6a9edbbb62681e158443e79ecc0d056a" +git-tree-sha1 = "8eeb3c73bbc0ca203d0dc8dad4008350bbe5797b" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.3.1+0" +version = "5.3.1+1" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1278,18 +1378,18 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" -[[deps.Memoize]] -deps = ["MacroTools"] -git-tree-sha1 = "2b1dfcba103de714d31c033b5dacc2e4a12c7caa" -uuid = "c03570c3-d221-55d1-a50c-7939bbd78826" -version = "0.4.4" +[[deps.MicroCollections]] +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.1.4" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1314,7 +1414,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1323,9 +1423,9 @@ version = "0.2.4" [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "7fcb4378f9c648a186bcb996fa29acc929a179ed" +git-tree-sha1 = "173a378f357e9bb24b22019efb5e4778223ce8cf" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.13.1" +version = "0.13.2" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1339,11 +1439,29 @@ git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.5.1" +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "900a11b3a2b02e36b25cb55a80777d4a4670f0f6" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.10" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] -git-tree-sha1 = "8bc9ce4233be3c63f8dcd78ccaf1b63a9c0baa34" +git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f" -version = "0.3.3" +version = "0.3.4" [[deps.NVTX_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1357,6 +1475,12 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NameResolution]] +deps = ["PrettyPrint"] +git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" +uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" +version = "0.1.5" + [[deps.NetCDF_jll]] deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1" @@ -1368,10 +1492,13 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1379,21 +1506,27 @@ git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" +[[deps.OneHotArrays]] +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" +uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" +version = "0.2.4" + [[deps.OpenBLAS32_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "2fb9ee2dc14d555a6df2a714b86b7125178344c2" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.21+0" +version = "0.3.24+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+2" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1419,6 +1552,12 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.1" + [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" @@ -1433,7 +1572,7 @@ version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PaddedViews]] deps = ["OffsetArrays"] @@ -1449,9 +1588,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.0" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1467,7 +1606,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1483,9 +1622,9 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] @@ -1526,10 +1665,10 @@ uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" version = "1.4.3" [[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] -git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "64bb68f76f789f5fe5930a80af310f19cdafeaed" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.12" +version = "0.4.17" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1549,18 +1688,17 @@ git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" +[[deps.PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" version = "2.3.1" -[[deps.Primes]] -deps = ["IntegerMathUtils"] -git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" -uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.5" - [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -1593,18 +1731,6 @@ git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.5.3+1" -[[deps.QuasiMonteCarlo]] -deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] -git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" -uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.3.3" - - [deps.QuasiMonteCarlo.extensions] - QuasiMonteCarloDistributionsExt = "Distributions" - - [deps.QuasiMonteCarlo.weakdeps] - Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" - [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -1616,14 +1742,14 @@ uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" version = "0.10.0" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.6.2" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1641,6 +1767,12 @@ weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + [[deps.RecipesBase]] deps = ["PrecompileTools"] git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" @@ -1654,18 +1786,20 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "3.5.4" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -1710,10 +1844,10 @@ uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d432b4c4cc922fb7b21b555c138aa87f9fb7beb8" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "ad711463cb386572f33f6209464d8dca5a081247" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.9.1" +version = "2.19.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1763,6 +1897,11 @@ version = "1.1.1" deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +[[deps.ShowCases]] +git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" +uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" +version = "0.1.0" + [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -1774,24 +1913,31 @@ git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" -[[deps.Sobol]] -deps = ["DelimitedFiles", "Random"] -git-tree-sha1 = "5a74ac22a9daef23705f010f72c81d6925b19df8" -uuid = "ed01d8cd-4d21-5b2a-85b4-cc3bdc58bad4" -version = "1.5.0" +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.0" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1803,6 +1949,12 @@ weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + [[deps.StackViews]] deps = ["OffsetArrays"] git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" @@ -1817,9 +1969,9 @@ version = "0.8.8" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25" +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.1" +version = "1.5.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -1828,12 +1980,13 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87" +git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.7.0" -weakdeps = ["Statistics"] +version = "1.9.1" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1844,7 +1997,7 @@ version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1876,26 +2029,31 @@ git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" +[[deps.StructArrays]] +deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] +git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.16" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SurfaceFluxes]] -deps = ["CLIMAParameters", "DocStringExtensions", "Logging", "RootSolvers", "Thermodynamics"] -git-tree-sha1 = "7f83013a0654d6504226d93ba0cba94d94e1b0b0" +deps = ["CLIMAParameters", "DocStringExtensions", "RootSolvers", "Thermodynamics"] +git-tree-sha1 = "a167924897731ee57ef0197bb19357bfc2d007bc" uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f" -version = "0.8.0" +version = "0.8.1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.3" [[deps.TOML]] deps = ["Dates"] @@ -1991,6 +2149,26 @@ weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -2035,18 +2213,27 @@ deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.19.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" InverseFunctionsUnitfulExt = "InverseFunctions" + [deps.Unitful.weakdeps] + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" version = "1.6.3" +[[deps.Unrolled]] +deps = ["MacroTools"] +git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" +uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" +version = "0.1.5" + [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -2077,20 +2264,26 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" -[[deps.WeakValueDicts]] -git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" -uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" -version = "0.1.0" +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -2263,7 +2456,7 @@ version = "0.4.9" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2271,6 +2464,34 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.5+0" +[[deps.Zygote]] +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "30c1b8bfc2b3c7c5d8bba7cd32e8b6d5f968e7c3" +uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "0.6.68" + + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" + + [deps.Zygote.weakdeps] + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.cuDNN]] +deps = ["CEnum", "CUDA", "CUDA_Runtime_Discovery", "CUDNN_jll"] +git-tree-sha1 = "94f6b231d21b8a10f5c3ccc4b4009017ca922847" +uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" +version = "1.2.2" + [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" @@ -2310,7 +2531,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2331,10 +2552,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "f7c281e9c61905521993a987d38b5ab1d4b53bef" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+1" +version = "1.6.40+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2356,7 +2577,7 @@ version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/test/mpi_tests/local_checks.sh b/test/mpi_tests/local_checks.sh index 25a727f12b..37325b4513 100644 --- a/test/mpi_tests/local_checks.sh +++ b/test/mpi_tests/local_checks.sh @@ -7,7 +7,7 @@ #SBATCH --ntasks=2 module purge -module load julia/1.9.4 openmpi/4.1.1 hdf5/1.12.1-ompi411 +module load julia/1.10.0 export JULIA_MPI_BINARY=system export JULIA_NUM_THREADS=${SLURM_CPUS_PER_TASK:=1} export CLIMACORE_DISTRIBUTED="MPI" diff --git a/test/mpi_tests/run_mpi_tests.jl b/test/mpi_tests/run_mpi_tests.jl index f739d2cb07..91e6ecfa4f 100644 --- a/test/mpi_tests/run_mpi_tests.jl +++ b/test/mpi_tests/run_mpi_tests.jl @@ -2,7 +2,7 @@ using MPI #= # if running locally: module purge -module load julia/1.9.4 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 hdf5/1.12.2-ompi415 nsight-systems/2023.2.1 +module load julia/1.10.0 cuda/12.2 ucx/1.14.1_cuda-12.2 nsight-systems/2023.4.1 export OPENBLAS_NUM_THREADS=1 export JULIA_NVTX_CALLBACKS=gc export OMPI_MCA_opal_warn_on_missing_libcuda=0