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"975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+1" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+1" - -[[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "c7dc3148a64d1cd3768c29b3db5972d1c302661b" -uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.73" - - [deps.Zygote.extensions] - ZygoteColorsExt = "Colors" - ZygoteDistancesExt = "Distances" - ZygoteTrackerExt = "Tracker" - - [deps.Zygote.weakdeps] - Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" - Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.5" - -[[deps.cuDNN]] -deps = ["CEnum", "CUDA", "CUDA_Runtime_Discovery", "CUDNN_jll"] -git-tree-sha1 = "4b3ac62501ca73263eaa0d034c772f13c647fba6" -uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" -version = "1.4.0" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "936081b536ae4aa65415d869287d43ef3cb576b2" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.53.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.isoband_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c" -uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4" -version = "0.2.3+0" - -[[deps.libaec_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" -uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" -version = "1.1.2+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.9.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.2+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.11.0+0" - -[[deps.libdecor_jll]] -deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] -git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" -uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" -version = "0.2.2+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.3+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.44+0" - -[[deps.libsixel_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] -git-tree-sha1 = "7dfa0fd9c783d3d0cc43ea1af53d69ba45c447df" -uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" -version = "1.10.3+1" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+2" - -[[deps.libwebp_jll]] -deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"] -git-tree-sha1 = "ccbb625a89ec6195856a50aa2b668a5c08712c94" -uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2" -version = "1.4.0+0" - -[[deps.libzip_jll]] -deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" -uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" -version = "1.11.1+0" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.59.0+0" - -[[deps.oneTBB_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" -uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/.buildkite/Manifest.toml b/.buildkite/Manifest.toml index 1f0ad5933a..a52d7cdf45 100644 --- a/.buildkite/Manifest.toml +++ b/.buildkite/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.5" +julia_version = "1.11.0" manifest_format = "2.0" -project_hash = "caf39978363ec9f96f38fb6498ca16e9535c8a91" +project_hash = "ab63553e2361eed332e6633f7c1e1b9df26c8d44" [[deps.ADTypes]] -git-tree-sha1 = "30bb95a372787af850addf28ac937f1be7b79173" +git-tree-sha1 = "72af59f5b8f09faee36b4ec48e014a79210f2f4f" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.10.0" +version = "1.11.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -15,6 +15,12 @@ weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] ADTypesConstructionBaseExt = "ConstructionBase" ADTypesEnzymeCoreExt = "EnzymeCore" +[[deps.AMD]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" +uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" +version = "0.5.3" + [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" @@ -79,9 +85,9 @@ version = "1.1.3" [[deps.Animations]] deps = ["Colors"] -git-tree-sha1 = "e81c509d2c8e49592413bfb0bb3b08150056c79d" +git-tree-sha1 = "e092fa223bf66a3c41f9c022bd074d916dc303e7" uuid = "27a7e980-b3e6-11e9-2bcd-0b925532e340" -version = "0.4.1" +version = "0.4.2" [[deps.Aqua]] deps = ["Compat", "Pkg", "Test"] @@ -90,19 +96,31 @@ uuid = "4c88cf16-eb10-579e-8560-4a9242c79595" version = "0.8.9" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "680b3b8759bd4c54052ada14e52355ab69e07876" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.4.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d60a1922358aa203019b7857a2c8c37329b8736c" +git-tree-sha1 = "d5140b60b87473df18cf4fe66382b7c3596df047" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.17.0" +version = "7.17.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -148,12 +166,23 @@ version = "0.2.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "14e254ef74e44cd6ed27fbb751d4e1f9bbf085cc" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.0.0" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.Automa]] deps = ["PrecompileTools", "SIMD", "TranscodingStreams"] @@ -186,9 +215,9 @@ version = "0.3.9" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579" +git-tree-sha1 = "3023a8cada3b08233252ee9b04edc3f3c39b1f04" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.7.5" +version = "1.7.6" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -218,12 +247,19 @@ version = "0.4.3" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" +[[deps.BenchmarkTools]] +deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "1.5.0" + [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -237,9 +273,9 @@ version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391" +git-tree-sha1 = "62551a412126a8c979febd1a05a986928719639e" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.1.1" +version = "1.2.0" weakdeps = ["BandedMatrices"] [deps.BlockArrays.extensions] @@ -276,6 +312,7 @@ version = "0.2.6" [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" +version = "1.11.0" [[deps.CRlibm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -284,10 +321,10 @@ uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0" version = "1.0.1+0" [[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "cdbdca28f19c2c7fcf34ffb48bfdaca404dcd18a" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics", "demumble_jll"] +git-tree-sha1 = "e0725a467822697171af4dae15cec10b4fc19053" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.5.0" +version = "5.5.2" weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] [deps.CUDA.extensions] @@ -297,9 +334,9 @@ weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ccd1e54610c222fadfd4737dac66bff786f63656" +git-tree-sha1 = "14996d716a2eaaeccfc8d7bc854dd87fde720ac1" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.10.3+0" +version = "0.10.4+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -309,9 +346,9 @@ version = "0.3.5" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "ed8a056a88f5b852df94046060f6770a57334728" +git-tree-sha1 = "17f1536c600133f7c4113bae0a2d98dbf27c7ebc" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.15.4+0" +version = "0.15.5+0" [[deps.CUDNN_jll]] deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -339,9 +376,9 @@ version = "1.18.2+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "9e2503a7ac8df599cbf422af95729b2d263220f6" +git-tree-sha1 = "bcffdcaed50d3453673b852f3522404a94b50fad" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.72.0" +version = "1.72.1" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -354,10 +391,10 @@ weakdeps = ["SparseArrays"] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ClimaAnalysis]] -deps = ["Dates", "Interpolations", "NCDatasets", "NaNStatistics", "OrderedCollections", "Reexport", "Statistics", "Unitful"] -git-tree-sha1 = "e746377ad9eb712b86ec60d4a047d933e71253b9" +deps = ["Artifacts", "Dates", "Interpolations", "NCDatasets", "NaNStatistics", "OrderedCollections", "Reexport", "Statistics", "Unitful"] +git-tree-sha1 = "b67f8f5f754fde6132bae1a2add06e51cf26227b" uuid = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" -version = "0.5.11" +version = "0.5.12" weakdeps = ["GeoMakie", "Makie"] [deps.ClimaAnalysis.extensions] @@ -399,7 +436,7 @@ version = "0.2.10" [[deps.ClimaLand]] deps = ["ArtifactWrappers", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaUtilities", "Dates", "DocStringExtensions", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"] -path = ".." +git-tree-sha1 = "2cf03e6608e7cd1f84ba548acb8c2edf4260a726" uuid = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" version = "0.15.5" @@ -428,26 +465,19 @@ deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstracti git-tree-sha1 = "dbc1d2c495f118c36a83fa93cd5311fe3a32f615" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" version = "0.7.38" +weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "StatsBase"] [deps.ClimaTimeSteppers.extensions] ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"] - [deps.ClimaTimeSteppers.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" - PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" - StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" - [[deps.ClimaUtilities]] -deps = ["Artifacts", "Dates"] -git-tree-sha1 = "f99f60059af1de49a24d16049dfa8d65e3d3907d" +deps = ["Artifacts", "ClimaComms", "Dates"] +git-tree-sha1 = "ae6e4d3223ecb29d3f3d9c5f82b622bae12f3bff" uuid = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513" -version = "0.1.18" +version = "0.1.19" [deps.ClimaUtilities.extensions] - ClimaUtilitiesClimaCommsCUDAExt = ["ClimaComms", "CUDA"] - ClimaUtilitiesClimaCommsExt = "ClimaComms" + ClimaUtilitiesCUDAExt = "CUDA" ClimaUtilitiesClimaCoreExt = "ClimaCore" ClimaUtilitiesClimaCoreInterpolationsExt = ["ClimaCore", "Interpolations"] ClimaUtilitiesClimaCoreNCDatasetsExt = ["ClimaCore", "NCDatasets"] @@ -457,7 +487,6 @@ version = "0.1.18" [deps.ClimaUtilities.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" ClimaCoreTempestRemap = "d934ef94-cdd4-4710-83d6-720549644b70" Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" @@ -469,6 +498,12 @@ git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" version = "0.1.13" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "TranscodingStreams"] +git-tree-sha1 = "e7c529cc31bb85b97631b922fa2e6baf246f5905" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.4" + [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" @@ -526,6 +561,11 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" + [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" @@ -583,6 +623,12 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" +[[deps.Convex]] +deps = ["AbstractTrees", "BenchmarkTools", "LDLFactorizations", "LinearAlgebra", "MathOptInterface", "OrderedCollections", "SparseArrays", "Test"] +git-tree-sha1 = "dac1878b4996fa56292d2c3bd28f2498b980bb93" +uuid = "f65535da-76fb-5f13-bab9-19810c17039a" +version = "0.16.3" + [[deps.CoordinateTransformations]] deps = ["LinearAlgebra", "StaticArrays"] git-tree-sha1 = "f9d7112bfff8a19a3a4ea4e03a8e6a91fe8456bf" @@ -631,6 +677,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -644,10 +691,10 @@ uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" [[deps.DelaunayTriangulation]] -deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "PrecompileTools", "Random"] -git-tree-sha1 = "89df54fbe66e5872d91d8c2cd3a375f660c3fd64" +deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] +git-tree-sha1 = "e1371a23fd9816080c828d0ce04373857fe73d33" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" -version = "1.6.1" +version = "1.6.3" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -656,10 +703,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "b7dbeaa770bad0980ddddf606de814cff2acb3bc" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.5" +version = "6.160.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -671,6 +718,7 @@ version = "6.151.5" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -684,6 +732,7 @@ version = "6.151.5" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" @@ -719,6 +768,7 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] @@ -753,15 +803,21 @@ git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053" uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" version = "2.2.4+0" +[[deps.EnsembleKalmanProcesses]] +deps = ["Convex", "Distributions", "DocStringExtensions", "GaussianRandomFields", "Interpolations", "LinearAlgebra", "MathOptInterface", "Optim", "QuadGK", "Random", "RecipesBase", "SCS", "SparseArrays", "Statistics", "StatsBase", "TOML"] +git-tree-sha1 = "00bb94ff704d7aeed9c72d4a2a05d6abf6cb7946" +uuid = "aa8a2aa5-91d8-4396-bcef-d4f2ec43552d" +version = "2.0.1" + [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "8f205a601760f4798a10f138c3940f0451d95188" +git-tree-sha1 = "2c366bfe21936e8f44b607eb86a1f4c110f0d841" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.8" +version = "0.8.7" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -781,9 +837,9 @@ version = "2.2.8" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.10" +version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -854,11 +910,42 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" +[[deps.FastGaussQuadrature]] +deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] +git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" +uuid = "442a2c76-b920-505d-bb47-c5924d526838" +version = "1.0.2" + +[[deps.FastPower]] +git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" +version = "1.1.1" + + [deps.FastPower.extensions] + FastPowerEnzymeExt = "Enzyme" + FastPowerForwardDiffExt = "ForwardDiff" + FastPowerMeasurementsExt = "Measurements" + FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerReverseDiffExt = "ReverseDiff" + FastPowerTrackerExt = "Tracker" + + [deps.FastPower.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "91e0e5c68d02bcdaae76d3c8ceb4361e8f28d2e9" +git-tree-sha1 = "2dd20384bf8c6d411b5c7370865b1e9b26cb2ea3" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.5" +version = "1.16.6" +weakdeps = ["HTTP"] + + [deps.FileIO.extensions] + HTTPExt = "HTTP" [[deps.FilePaths]] deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"] @@ -879,6 +966,7 @@ weakdeps = ["Mmap", "Test"] [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -894,9 +982,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "b10bdafd1647f57ace3885143936749d61638c3b" +git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.26.0" +version = "2.26.2" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -973,15 +1061,15 @@ version = "4.1.1" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" +git-tree-sha1 = "786e968a8d2fb167f2e4880baba62e0e26bd8e4e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.2+0" +version = "2.13.3+1" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] -git-tree-sha1 = "77e2b094e61d939f9626181ab23d0b76e78f9fd3" +git-tree-sha1 = "d52e255138ac21be31fa633200b65e4e71d26802" uuid = "663a7486-cb36-511b-a19d-713bb74d65c9" -version = "0.10.5" +version = "0.10.6" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1009,6 +1097,7 @@ version = "0.4.12" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -1016,11 +1105,6 @@ git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.4.0+1" -[[deps.GMP_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" -version = "6.2.1+6" - [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] git-tree-sha1 = "62ee71528cca49be797076a76bdc654a170a523e" @@ -1057,6 +1141,12 @@ git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" version = "0.5.8" +[[deps.GaussianRandomFields]] +deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "Plots", "Random", "RecipesBase", "SpecialFunctions", "Statistics", "StatsBase"] +git-tree-sha1 = "aaf37fbddc7bca5391677fb5f5082dd29442ca8f" +uuid = "e4b2fa32-6e09-5554-b718-106ed5adafe9" +version = "2.2.5" + [[deps.GeoFormatTypes]] git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271" uuid = "68eda718-8dee-11e9-39e7-89f7f65f511f" @@ -1092,9 +1182,9 @@ weakdeps = ["Makie"] [[deps.GeoMakie]] deps = ["Colors", "Downloads", "GeoFormatTypes", "GeoInterface", "GeoInterfaceMakie", "GeoJSON", "Geodesy", "GeometryBasics", "GeometryOps", "ImageIO", "LinearAlgebra", "Makie", "NaturalEarth", "Proj", "Reexport", "Statistics", "StructArrays"] -git-tree-sha1 = "c925cdc59c1b677bd1edfc002f3f7fe84fa318bd" +git-tree-sha1 = "8183d7894417feed8aa8d2a047aeaf02c8562e64" uuid = "db073c08-6b98-4ee5-b6a4-5efafb3259c6" -version = "0.7.8" +version = "0.7.9" [[deps.Geodesy]] deps = ["CoordinateTransformations", "Dates", "LinearAlgebra", "StaticArrays"] @@ -1143,15 +1233,9 @@ version = "0.1.0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f" +git-tree-sha1 = "b36c7e110080ae48fdef61b0c31e6b17ada23b33" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.5+0" - -[[deps.GnuTLS_jll]] -deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Zlib_jll"] -git-tree-sha1 = "383db7d3f900f4c1f47a8a04115b053c095e48d3" -uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d" -version = "3.8.4+0" +version = "2.82.2+0" [[deps.Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] @@ -1161,15 +1245,15 @@ version = "1.1.3" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.14+1" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "fc713f007cff99ff9e50accba6373624ddd33588" +git-tree-sha1 = "dc6bed05c15523624909b3953686c5f5ffa10adc" uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.11.0" +version = "0.11.1" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -1193,10 +1277,10 @@ uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" version = "1.14.2+1" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "1336e07ba2eb75614c99496501a8f4b233e9fafe" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "ae350b8225575cc3ea385d4131c81594f86dfe4f" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.10" +version = "1.10.12" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1310,6 +1394,7 @@ version = "2024.2.1+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -1383,9 +1468,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "39d64b09147620f5ffbf6b2d3255be3c901bec63" +git-tree-sha1 = "71b48d857e86bf7a1838c4736545699974ce79a2" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.8" +version = "0.1.9" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -1437,9 +1522,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "e73a077abc7fe798fe940deabe30ef6c66bdde52" +git-tree-sha1 = "27044736be7c5727d35fc4318d7949dee33c37b4" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.29" +version = "0.9.30" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1475,6 +1560,12 @@ git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" +[[deps.LDLFactorizations]] +deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13" +uuid = "40e66cde-538c-5869-a4ad-c39174c6795b" +version = "0.10.1" + [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "36bdbc52f13a7d1dcb0f3cd694e01677a515655b" @@ -1553,6 +1644,7 @@ version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LazyModules]] git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" @@ -1567,16 +1659,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1585,6 +1678,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1599,10 +1693,10 @@ uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" version = "1.11.0+0" [[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "ff3b4b9d35de638936a525ecd36e86a8bb919d11" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" +version = "1.7.0+0" [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1618,9 +1712,9 @@ version = "1.17.0+1" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.1+0" +version = "2.40.2+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1630,9 +1724,9 @@ version = "4.7.0+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.1+0" +version = "2.40.2+0" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] @@ -1643,23 +1737,20 @@ version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearOperators]] deps = ["FastClosures", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] git-tree-sha1 = "f55281226cdae8edea2c850fda88d8f5a03485b6" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" version = "2.9.0" +weakdeps = ["CUDA", "ChainRulesCore", "LDLFactorizations"] [deps.LinearOperators.extensions] LinearOperatorsCUDAExt = "CUDA" LinearOperatorsChainRulesCoreExt = "ChainRulesCore" LinearOperatorsLDLFactorizationsExt = "LDLFactorizations" - [deps.LinearOperators.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" - [[deps.LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll"] git-tree-sha1 = "fa7fd067dca76cadd880f1ca937b4f387975a9f5" @@ -1684,6 +1775,7 @@ version = "0.3.28" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1821,6 +1913,13 @@ version = "0.4.2" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" + +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "e065ca5234f53fd6f920efaee4940627ad991fb4" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.34.0" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] @@ -1837,7 +1936,7 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1852,9 +1951,9 @@ version = "0.2.0" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" +git-tree-sha1 = "bc95bf4149bf535c09602e3acdf950d9b4376227" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.4+2" +version = "10.1.4+3" [[deps.Missings]] deps = ["DataAPI"] @@ -1864,6 +1963,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] @@ -1873,7 +1973,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1889,6 +1989,12 @@ weakdeps = ["Adapt", "CUDA"] [deps.MultiBroadcastFusion.extensions] MultiBroadcastFusionCUDAExt = ["CUDA", "Adapt"] +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "a2710df6b0931f987530f59427441b21245d8f5e" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.6.0" + [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] git-tree-sha1 = "2c9dc92001ac06d432f363f37ff5552954d9947c" @@ -1909,9 +2015,9 @@ version = "4.5.1" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "da09a1e112fd75f9af2a5229323f01b56ec96a4c" +git-tree-sha1 = "1177f161cda2083543b9967d7ca2a3e24e721e13" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.24" +version = "0.9.26" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1931,9 +2037,9 @@ version = "0.9.24" [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] -git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" +git-tree-sha1 = "6a6f8bfaa91bb2e40ff562ab9f30dc827741daef" uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f" -version = "0.3.4" +version = "0.3.5" [[deps.NVTX_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1949,9 +2055,9 @@ version = "1.0.2" [[deps.NaNStatistics]] deps = ["PrecompileTools", "Static", "StaticArrayInterface"] -git-tree-sha1 = "d86d1c878cdab73ec06da5eb348967992879507f" +git-tree-sha1 = "f2a685149d4e7d62865babd606092f8e89a6d8f8" uuid = "b946abbf-3ea7-4610-9019-9858bfdeaf2d" -version = "0.6.42" +version = "0.6.43" [[deps.NameResolution]] deps = ["PrettyPrint"] @@ -1977,12 +2083,6 @@ git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd" uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" version = "1.1.1" -[[deps.Nettle_jll]] -deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4" -uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b" -version = "3.7.2+0" - [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" @@ -2009,14 +2109,20 @@ version = "1.3.5+1" [[deps.OneHotArrays]] deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "963a3f28a2e65bb87a68033ea4a616002406037d" +git-tree-sha1 = "c8c7f6bfabe581dc40b580313a75f1ecce087e27" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.5" +version = "0.2.6" + +[[deps.OpenBLAS32_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "dd806c813429ff09878ea3eeb317818f3ca02871" +uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" +version = "0.3.28+3" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -2043,9 +2149,9 @@ version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] -git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" +git-tree-sha1 = "2dace87e14256edb1dd0724ab7ba831c779b96bd" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "5.0.5+0" +version = "5.0.6+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -2065,6 +2171,16 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" +[[deps.Optim]] +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "1.10.0" +weakdeps = ["MathOptInterface"] + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] git-tree-sha1 = "c9ff5c686240c31eb8570b662dd1f66f4b183116" @@ -2078,15 +2194,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.3+0" [[deps.OrderedCollections]] -git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.3" - -[[deps.P11Kit_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf" -uuid = "c2071276-7c44-58a7-b746-946036e04d0a" -version = "0.24.1+0" +version = "1.7.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2119,9 +2229,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Packing]] deps = ["GeometryBasics"] -git-tree-sha1 = "ec3edfe723df33528e085e632414499f26650501" +git-tree-sha1 = "bc5bf2ea3d5351edf285a06b0016788a121ce92c" uuid = "19eb6ba3-879d-56ad-ad62-d5c202156566" -version = "0.5.0" +version = "0.5.1" [[deps.PaddedViews]] deps = ["OffsetArrays"] @@ -2159,9 +2269,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.43.4+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PkgVersion]] deps = ["Pkg"] @@ -2230,6 +2344,12 @@ git-tree-sha1 = "7dbfb7f61c3aa5def7b7dad3fa344c1c2858a83b" uuid = "9c32591e-4766-534b-9725-b71a8799265b" version = "24.6.0+0" +[[deps.PositiveFactorizations]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" +uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" +version = "0.2.4" + [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" @@ -2268,10 +2388,11 @@ version = "2.4.0" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProfileCanvas]] deps = ["Base64", "JSON", "Pkg", "Profile", "REPL"] @@ -2345,12 +2466,14 @@ version = "2.11.1" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.Random123]] deps = ["Random", "RandomNumbers"] @@ -2399,9 +2522,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "6f4dca5fd8e97087a76b7ab8384d1c3086ace0b7" +git-tree-sha1 = "32f824db4e5bab64e25a12b22483a30a6b813d08" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.27.3" +version = "3.27.4" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2410,6 +2533,7 @@ version = "3.27.3" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStructArraysExt = "StructArrays" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2420,6 +2544,7 @@ version = "3.27.3" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2469,6 +2594,26 @@ git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" version = "0.5.13" +[[deps.SCS]] +deps = ["MathOptInterface", "Requires", "SCS_jll", "SparseArrays"] +git-tree-sha1 = "aa3fcff53da363b4ba4b54d4ac4c9186ab00d703" +uuid = "c946c3f1-0d1f-5ce8-9dea-7daa1f7e2d13" +version = "2.0.2" + + [deps.SCS.extensions] + SCSSCS_GPU_jllExt = ["SCS_GPU_jll"] + SCSSCS_MKL_jllExt = ["SCS_MKL_jll"] + + [deps.SCS.weakdeps] + SCS_GPU_jll = "af6e375f-46ec-5fa0-b791-491b0dfa44a4" + SCS_MKL_jll = "3f2553a9-4106-52be-b7dd-865123654657" + +[[deps.SCS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl", "OpenBLAS32_jll"] +git-tree-sha1 = "902cc4e42ecca21bbd74babf899b2a5b12add323" +uuid = "f4f2fc5b-1d94-523c-97ea-2ab488bedf4b" +version = "3.2.7+0" + [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" @@ -2497,9 +2642,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "cacc7bc54bab8749b1fc1032c4911fe80cffb959" +git-tree-sha1 = "f48e0239fbb7799e8d81133ea71a726ec510c9ef" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.61.0" +version = "2.65.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2533,9 +2678,9 @@ weakdeps = ["SparseArrays", "StaticArraysCore"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "25514a6f200219cd1073e4ff23a6324e4a7efe64" +git-tree-sha1 = "0444a37a25fab98adbd90baa806ee492a3af133a" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.5.0" +version = "1.6.1" [[deps.Scratch]] deps = ["Dates"] @@ -2551,6 +2696,7 @@ version = "1.4.7" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2567,6 +2713,7 @@ version = "0.4.1" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.ShowCases]] git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" @@ -2604,6 +2751,7 @@ version = "0.1.3" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortTileRecursiveTree]] deps = ["Extents", "GeoInterface"] @@ -2620,7 +2768,7 @@ version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2657,10 +2805,10 @@ uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.1" [[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] +git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.10" +version = "1.1.1" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] @@ -2690,9 +2838,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.3" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2748,6 +2901,10 @@ git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.11.0" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2755,7 +2912,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SurfaceFluxes]] deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"] @@ -2810,6 +2967,7 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.Thermodynamics]] deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"] @@ -2866,11 +3024,6 @@ version = "0.4.84" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.9" - [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" uuid = "981d1d27-644d-49a2-9326-4793e63143c3" @@ -2890,6 +3043,7 @@ version = "1.5.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2898,6 +3052,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2907,9 +3062,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd" +git-tree-sha1 = "01915bfcd62be15329c9a07235447a89d588327c" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.21.0" +version = "1.21.1" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2935,9 +3090,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "2d17fabcd17e67d7625ce9c531fb9f40b7c42ce4" +git-tree-sha1 = "de4287a6569bcf3a8d6201d387991a8dda25c954" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.2.1" +version = "0.2.2" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -2988,9 +3143,9 @@ version = "2.13.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" +git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.41+0" +version = "1.1.42+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3012,15 +3167,15 @@ version = "1.2.4+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" +version = "1.8.6+1" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +git-tree-sha1 = "2b0e27d52ec9d8d483e2ca0b72b3cb1a8df5c27a" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" +version = "1.0.11+1" [[deps.Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -3030,15 +3185,15 @@ version = "1.2.0+4" [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +git-tree-sha1 = "02054ee01980c90297412e4c809c8694d7323af3" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" +version = "1.1.4+1" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.6+0" +version = "1.3.6+1" [[deps.Xorg_libXfixes_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -3072,15 +3227,15 @@ version = "0.9.11+0" [[deps.Xorg_libpthread_stubs_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +git-tree-sha1 = "fee57a273563e273f0f53275101cd41a8153517a" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" +version = "0.1.1+1" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" +git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+0" +version = "1.17.0+1" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] @@ -3138,9 +3293,9 @@ version = "2.39.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "b9ead2d2bdb27330545eb14234a2e300da61232e" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.5.0+1" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -3181,6 +3336,12 @@ git-tree-sha1 = "4b3ac62501ca73263eaa0d034c772f13c647fba6" uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" version = "1.4.0" +[[deps.demumble_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6498e3581023f8e530f34760d18f75a69e3a4ea8" +uuid = "1e29f10c-031c-5a83-9565-69cddfc27673" +version = "1.3.0+0" + [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" @@ -3189,15 +3350,15 @@ version = "3.2.9+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "936081b536ae4aa65415d869287d43ef3cb576b2" +git-tree-sha1 = "6e50f145003024df4f5cb96c7fce79466741d601" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.53.0+0" +version = "0.56.3+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +git-tree-sha1 = "0ba42241cb6809f1a278d0bcb976e0483c3f1f2d" uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "3.1.1+1" [[deps.isoband_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -3277,10 +3438,10 @@ uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2" version = "1.4.0+0" [[deps.libzip_jll]] -deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "e797fa066eba69f4c0585ffbd81bc780b5118ce2" uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" -version = "1.11.1+0" +version = "1.11.2+0" [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -3291,7 +3452,7 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/.buildkite/Project.toml b/.buildkite/Project.toml index 7f298bb8a0..2bc15e855a 100644 --- a/.buildkite/Project.toml +++ b/.buildkite/Project.toml @@ -16,6 +16,7 @@ ClimaUtilities = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab" +EnsembleKalmanProcesses = "aa8a2aa5-91d8-4396-bcef-d4f2ec43552d" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" Formatting = "59287772-0a20-5a39-b81b-1366585eb4c0" GeoMakie = "db073c08-6b98-4ee5-b6a4-5efafb3259c6" diff --git a/experiments/calibration/global_bucket/calibrate_bucket.jl b/experiments/calibration/global_bucket/calibrate_bucket.jl new file mode 100644 index 0000000000..d2d85c9e7b --- /dev/null +++ b/experiments/calibration/global_bucket/calibrate_bucket.jl @@ -0,0 +1,71 @@ +# Use the .buildkite environment +# bucket_turbulent_fluxes(params) returns lhf and shf as a function of 6 parameters +include("calibrate_bucket_function.jl") + +using Random + +#= Target (perfect model) +params = (; + κ_soil = FT(1.5), + ρc_soil = FT(2e6), + f_bucket = FT(0.75), + W_f = FT(0.2), + p = FT(1), + z_0m = FT(1e-2), +) +target = bucket_turbulent_fluxes(params)[1] +=# + +target = full_obs_era5 + +# Parameters prior +prior_κ_soil = EKP.constrained_gaussian("κ_soil", 2, 1, 0, Inf); +prior_ρc_soil = EKP.constrained_gaussian("ρc_soil", 4e6, 2e6, 0, Inf); +prior_f_bucket = EKP.constrained_gaussian("f_bucket", 0.5, 0.3, 0, 1); +prior_W_f = EKP.constrained_gaussian("W_f", 0.4, 0.4, 0, Inf); +prior_p = EKP.constrained_gaussian("p", 2, 1, 1, Inf); +prior_z_0m = EKP.constrained_gaussian("z_0m", 0.01, 0.1, 0, Inf); +prior = EKP.combine_distributions([ + prior_κ_soil, + prior_ρc_soil, + prior_f_bucket, + prior_W_f, + prior_p, + prior_z_0m, +]); + +rng_seed = 2 +rng = Random.MersenneTwister(rng_seed) + +N_ensemble = 3 # should be 10 +N_iterations = 3 # should be 10 + +initial_ensemble = EKP.construct_initial_ensemble(rng, prior, N_ensemble); +ensemble_kalman_process = EKP.EnsembleKalmanProcess( + initial_ensemble, + target, + EKP.Inversion(); + rng = rng, +); + +for i in 1:N_iterations + params_i = EKP.get_ϕ_final(prior, ensemble_kalman_process) + + G_ens = hcat( + [ + bucket_turbulent_fluxes((; + κ_soil = params_i[1, j], + ρc_soil = params_i[2, j], + f_bucket = params_i[3, j], + W_f = params_i[4, j], + p = params_i[5, j], + z_0m = params_i[6, j], + ))[2] for j in 1:N_ensemble + ]..., + ) + + EKP.update_ensemble!(ensemble_kalman_process, G_ens) +end + +final_ensemble = EKP.get_ϕ_final(prior, ensemble_kalman_process) +println(final_ensemble) diff --git a/experiments/calibration/global_bucket/calibrate_bucket_function.jl b/experiments/calibration/global_bucket/calibrate_bucket_function.jl new file mode 100644 index 0000000000..52173253cf --- /dev/null +++ b/experiments/calibration/global_bucket/calibrate_bucket_function.jl @@ -0,0 +1,328 @@ +# # Global bucket run + +# The code sets up and runs the bucket model on a spherical domain, +# using ERA5 data. + +# Simulation Setup +# Number of spatial elements: 101 in horizontal, 5 in vertical +# Soil depth: 3.5 m +# Simulation duration: 365 d +# Timestep: 3600 s +# Timestepper: RK4 +# Atmos forcing update: every 3 hours +import SciMLBase +import ClimaComms +ClimaComms.@import_required_backends +import ClimaTimeSteppers as CTS +using ClimaCore +using ClimaUtilities.ClimaArtifacts +import Interpolations +using Insolation + +using ClimaDiagnostics +using ClimaAnalysis +import ClimaAnalysis.Visualize as viz +using ClimaUtilities + +import ClimaUtilities.TimeVaryingInputs: + TimeVaryingInput, LinearInterpolation, PeriodicCalendar +import ClimaUtilities.SpaceVaryingInputs: SpaceVaryingInput +import ClimaUtilities.Regridders: InterpolationsRegridder +import ClimaUtilities.ClimaArtifacts: @clima_artifact +import ClimaParams as CP + +using ClimaLand +using ClimaLand.Bucket: + BucketModel, BucketModelParameters, PrescribedBaregroundAlbedo +import ClimaLand +import ClimaLand.Parameters as LP + +using Statistics +using CairoMakie +using Dates +using Random +import NCDatasets +using NCDatasets +using StaticArrays +using CUDA + +import EnsembleKalmanProcesses as EKP + +const FT = Float64; +context = ClimaComms.context() +device = ClimaComms.device() +device_suffix = device isa ClimaComms.CPUSingleThreaded ? "cpu" : "gpu" +root_path = "bucket_longrun_$(device_suffix)" + +# Returns a 2 SVectors of (lat, lon) tuples for n random locations on the land +# surface. The two sets of locations are designed to be used as a training and +# validation set. +function rand_locations(surface_space, regridder_type, n = 100) + # Load the landsea mask data + datapath = ClimaLand.Artifacts.topmodel_data_path() + landsea_mask = SpaceVaryingInput( + datapath, + "landsea_mask", + surface_space; + regridder_type, + ) + + # Get the corresponding latitude and longitude values + lat = ClimaCore.Fields.coordinate_field(surface_space).lat + lon = ClimaCore.Fields.coordinate_field(surface_space).long + + # Find the coordinates of 2n random land locations + land_inds = rand(findall(x -> x == 1.0, Array(parent(landsea_mask))), 2 * n) + + # Since this is run very rarely (once at start of calibration run), we don't + # mind scalar iteration when running on the GPU + CUDA.@allowscalar land_locs = StaticArrays.sacollect( + SVector{2 * n, Tuple{FT, FT}}, + zip(parent(lon)[land_inds], parent(lat)[land_inds]), + ) + + # Return a uniform random sample of n land locations + return ( + SVector{n}(land_locs[1:n]...), + SVector{n}(land_locs[(n + 1):end]...), + ) +end + +function setup_prob(t0, tf, Δt, params, outdir; nelements = (101, 7)) + time_interpolation_method = LinearInterpolation(PeriodicCalendar()) + regridder_type = :InterpolationsRegridder + earth_param_set = LP.LandParameters(FT) + radius = FT(6378.1e3) + depth = FT(3.5) + domain = ClimaLand.Domains.SphericalShell(; + radius = radius, + depth = depth, + nelements = nelements, + npolynomial = 1, + dz_tuple = FT.((1.0, 0.05)), + ) + surface_space = domain.space.surface + subsurface_space = domain.space.subsurface + + start_date = DateTime(2008) + # Forcing data + # Forcing data + era5_artifact_path = + ClimaLand.Artifacts.era5_land_forcing_data2008_folder_path(; context) + era5_ncdata_path = joinpath(era5_artifact_path, "era5_2008_1.0x1.0.nc") + atmos, radiation = ClimaLand.prescribed_forcing_era5( + era5_ncdata_path, + surface_space, + start_date, + earth_param_set, + FT; + time_interpolation_method = time_interpolation_method, + regridder_type = regridder_type, + ) + + # Set up parameters + (; κ_soil, ρc_soil, f_bucket, W_f, p, z_0m) = params + z_0b = z_0m + τc = FT(Δt) + α_snow = FT(0.8) + albedo = PrescribedBaregroundAlbedo{FT}(α_snow, surface_space) + bucket_parameters = BucketModelParameters( + FT; + albedo, + z_0m, + z_0b, + τc, + f_bucket, + p, + W_f, + κ_soil, + ρc_soil, + ) + bucket = BucketModel( + parameters = bucket_parameters, + domain = domain, + atmosphere = atmos, + radiation = radiation, + ) + + temp_anomaly_amip(coord) = 40 * cosd(coord.lat)^4 + Y, p, cds = initialize(bucket) + # Set temperature IC including anomaly, based on atmospheric setup + T_sfc_0 = FT(271.0) + @. Y.bucket.T = T_sfc_0 + temp_anomaly_amip(cds.subsurface) + Y.bucket.W .= FT(f_bucket * W_f) + Y.bucket.Ws .= FT(0.0) + Y.bucket.σS .= FT(0.0) + + set_initial_cache! = make_set_initial_cache(bucket) + set_initial_cache!(p, Y, t0) + exp_tendency! = make_exp_tendency(bucket) + + prob = SciMLBase.ODEProblem( + CTS.ClimaODEFunction(T_exp! = exp_tendency!, dss! = ClimaLand.dss!), + Y, + (t0, tf), + p, + ) + + updateat = Array(t0:(3600 * 3):tf) + drivers = ClimaLand.get_drivers(bucket) + updatefunc = ClimaLand.make_update_drivers(drivers) + + # ClimaDiagnostics + + nc_writer = ClimaDiagnostics.Writers.NetCDFWriter(subsurface_space, outdir) + + diags = ClimaLand.default_diagnostics( + bucket, + start_date; + output_writer = nc_writer, + average_period = :monthly, + ) + + diagnostic_handler = + ClimaDiagnostics.DiagnosticsHandler(diags, Y, p, t0; dt = Δt) + + diag_cb = ClimaDiagnostics.DiagnosticsCallback(diagnostic_handler) + + driver_cb = ClimaLand.DriverUpdateCallback(updateat, updatefunc) + return prob, SciMLBase.CallbackSet(driver_cb, diag_cb) +end + +# Define the locations longitudes and latitudes +# Needs to be defined once, both for g(θ) and ERA5 target +t0 = 0.0 +tf = 60 * 60.0 * 24 * 365 +Δt = 900.0 +nelements = (101, 7) +regridder_type = :InterpolationsRegridder +radius = FT(6378.1e3) +depth = FT(3.5) +domain = ClimaLand.Domains.SphericalShell(; + radius = radius, + depth = depth, + nelements = nelements, + npolynomial = 1, + dz_tuple = FT.((1.0, 0.05)), + ) +surface_space = domain.space.surface +training_locations, validation_locations = +rand_locations(surface_space, regridder_type, 5) + +# (; κ_soil, ρc_soil, f_bucket, W_f, p, z_0m) = params +# The truth params = (;κ_soil = FT(1.5), ρc_soil = FT(2e6), f_bucket = FT(0.75), W_f = FT(0.2), p = FT(1), z_0m = FT(1e-2)) +function bucket_turbulent_fluxes(params) + diagnostics_outdir = joinpath(root_path, "global_diagnostics") + outdir = ClimaUtilities.OutputPathGenerator.generate_output_path( + diagnostics_outdir, + ) + prob, cb = setup_prob(t0, tf, Δt, params, outdir; nelements) + + timestepper = CTS.RK4() + ode_algo = CTS.ExplicitAlgorithm(timestepper) + SciMLBase.solve(prob, ode_algo; dt = Δt, callback = cb, adaptive = false) + + simdir = ClimaAnalysis.SimDir( + joinpath(root_path, "global_diagnostics", "output_active"), + ) + lhf = get(simdir; short_name = "lhf") + shf = get(simdir; short_name = "shf") + + # Initialize an empty list to store observations + obs_list = [] + # Loop over each location + for (lon, lat) in training_locations + # Slice lhf and shf at the given longitude and latitude + lhf_loc = ClimaAnalysis.slice(lhf, lon = lon, lat = lat) + shf_loc = ClimaAnalysis.slice(shf, lon = lon, lat = lat) + + # Create Observation objects for lhf and shf + lhf_obs = EKP.Observation( + Dict( + "samples" => lhf_loc.data, + "covariances" => cov(lhf_loc.data) * EKP.I, + "names" => "lhf_$(lon)_$(lat)", + ), + ) + shf_obs = EKP.Observation( + Dict( + "samples" => shf_loc.data, + "covariances" => cov(shf_loc.data) * EKP.I, + "names" => "shf_$(lon)_$(lat)", + ), + ) + + # Add the observations to the list + push!(obs_list, lhf_obs) + push!(obs_list, shf_obs) + end + + # Combine all observations into a single observation + full_obs = EKP.combine_observations(obs_list) + + # Optional + #= + minibatcher = EKP.RandomFixedSizeMinibatcher(3) # batches the epoch of size 100, into batches of size 5 + observation_series = EKP.ObservationSeries( + Dict( + "observations" => full_obs, + "minibatcher" => minibatcher, + ), + ) + =# + + obs = EKP.get_obs(full_obs) + + return full_obs, obs +end + +# Read in the era5 datafile +era5_ds = Dataset(joinpath(ClimaLand.Artifacts.era5_surface_data2008_path(), + "era5_monthly_surface_fluxes_200801-200812.nc")) + +# Make the ERA5 target +ERA5_target = [] +close = (x, y) -> abs(x - y) < 5e-1 +for (lon, lat) in training_locations + # Fetch slices of lhf and shf era5 data from the era5 dataset + lat_ind, lon_ind = findall((x) -> close(x, lat), era5_ds["latitude"][:])[1], + findall((x) -> close(x, lon + 180), era5_ds["longitude"][:])[1] + lhf_loc = vec(era5_ds["mslhf"][lon_ind, lat_ind, :][:, end, :]) + shf_loc = vec(era5_ds["msshf"][lon_ind, lat_ind, :][:, end, :]) + + # Create Observation objects for lhf and shf + lhf_ERA5 = EKP.Observation( + Dict( + "samples" => lhf_loc, + "covariances" => cov(lhf_loc) * EKP.I, + "names" => "lhf_$(lon)_$(lat)", + ), + ) + + shf_ERA5 = EKP.Observation( + Dict( + "samples" => shf_loc, + "covariances" => cov(shf_loc) * EKP.I, + "names" => "shf_$(lon)_$(lat)", + ), + ) + + # Add the observations to the target + push!(ERA5_target, lhf_ERA5) + push!(ERA5_target, shf_ERA5) + +end + +full_obs_era5 = EKP.combine_observations(ERA5_target) + +# Things to consider: +# - masking out the ocean when comparing to data +# - output paths matching to parameters + +# Priors: +# κ_soil = FT(1.5): Gaussian with mean = 2, std dev = 1, cannot be negative [ or uniform from 0.5 to 2.5] +# ρc_soil = FT(2e6); Gaussian with mean = 4e6, std dev = 2e6, cannot be negative [ or uniform from 1e5 to 5e6] +# f_bucket = FT(0.75); Gaussian with mean = 0.5, std_dev = 0.3, cannot be negative, cannot be greater than 1 [ or uniform from 0.2 to 0.9] +# W_f = FT(0.2); Gaussian with mean = 0.4, std_dev = 0.4, cannot be negative [ or uniform from 0.05 to 1] +# p = FT(1); we can range uniform 1 to 2.5, cannot be smaller than 1 +#z_0m = FT(1e-2); can we sample from log normal ranging from z_0m = 1e-3 to z_0m = 0.1? diff --git a/job_script.sh b/job_script.sh new file mode 100644 index 0000000000..4545f1ac72 --- /dev/null +++ b/job_script.sh @@ -0,0 +1,17 @@ +#!/bin/bash +#SBATCH --job-name=calibrate_bucket +#SBATCH --output=output_%j.txt # Output file (%j expands to job ID) +#SBATCH --error=error_%j.txt # Error file +#SBATCH --nodes=1 # Number of nodes +#SBATCH --ntasks=1 # Number of tasks (processes) +#SBATCH --time=05:00:00 # Time limit hrs:min:sec +#SBATCH --mem=8G # Memory per node +#SBATCH --partition=gpu +#SBATCH --gpus=1 + +# Run your command +export CLIMACOMMS_DEVICE="CUDA" +export CLIMACOMMS_CONTEXT="SINGLETON" + +julia --project=.buildkite/ experiments/calibration/global_bucket/calibrate_bucket.jl + diff --git a/src/Artifacts.jl b/src/Artifacts.jl index 0e951bc7b8..87263f46ac 100644 --- a/src/Artifacts.jl +++ b/src/Artifacts.jl @@ -32,6 +32,18 @@ function era5_lai_forcing_data2008_folder_path(; context = nothing) return @clima_artifact("era5_land_forcing_data2008_lai", context) end +""" + era5_surface_data2008_path(; context) + +Return the path to the folder that contains the ERA5 monthly surface data + +NOTE: We should be able to use @clima_artifact here, but the folders on central +seem to be named differently than the artifact name +""" +function era5_surface_data2008_path(; context = nothing) + return "/groups/esm/ClimaArtifacts/artifacts/era5_surface_fluxes_2008" +end + """ clm_data__folder_path(; context)