From c07b081c9debd93fed9c59647e474915810b940b Mon Sep 17 00:00:00 2001 From: Evelyn Greeves Date: Thu, 20 Jun 2024 15:43:49 +0100 Subject: [PATCH] Fix paths in kraken section --- docs/lesson06-taxonomic-annotations/01-taxonomic.qmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/lesson06-taxonomic-annotations/01-taxonomic.qmd b/docs/lesson06-taxonomic-annotations/01-taxonomic.qmd index 1b3f80d..91717b9 100644 --- a/docs/lesson06-taxonomic-annotations/01-taxonomic.qmd +++ b/docs/lesson06-taxonomic-annotations/01-taxonomic.qmd @@ -154,7 +154,7 @@ Loading database information... done. This command generates two outputs, a .kraken and a .report file. Let's look at the top of these files with the following command: ``` {.bash filename="Code"} -head taxonomy/ERR4998593.kraken +head results/taxonomy/ERR4998593.kraken ``` ``` {.default filename="Output"} @@ -173,7 +173,7 @@ U ERR4998593.57807180 0 151 A:5 0:112 This gives us information about every read in the raw reads. As we can see, the kraken file is not very readable. So let's look at the report file instead: ``` {.bash filename="Code"} -less taxonomy/ERR4998593.report +less results/taxonomy/ERR4998593.report ``` ``` {.default filename="Output"}