diff --git a/R/investigateSignature.R b/R/investigateSignature.R index 7a53fce..6052202 100644 --- a/R/investigateSignature.R +++ b/R/investigateSignature.R @@ -45,7 +45,7 @@ NULL #' #' # Load and prepare the signature #' inputSignature <- read.table(system.file("extdata", -#' "dCovid_diffexp.tsv.tar.xz", +#' "dCovid_diffexp.tsv", #' package = "drugfindR" #' ), header = TRUE) #' diff --git a/R/prepareSignature.R b/R/prepareSignature.R index 3055597..59529a8 100644 --- a/R/prepareSignature.R +++ b/R/prepareSignature.R @@ -23,7 +23,7 @@ #' # Prepare an L1000 signature from a differential gene expression output #' #' inputSignature <- read.table(system.file("extdata", -#' "dCovid_diffexp.tsv.tar.xz", +#' "dCovid_diffexp.tsv", #' package = "drugfindR" #' ), header = TRUE) #' diff --git a/man/investigateSignature.Rd b/man/investigateSignature.Rd index cfd8cb4..fc107b1 100644 --- a/man/investigateSignature.Rd +++ b/man/investigateSignature.Rd @@ -73,7 +73,7 @@ iLINCS to find the relevant concordant (or discordant) signatures # Load and prepare the signature inputSignature <- read.table(system.file("extdata", - "dCovid_diffexp.tsv.tar.xz", + "dCovid_diffexp.tsv", package = "drugfindR" ), header = TRUE) diff --git a/man/prepareSignature.Rd b/man/prepareSignature.Rd index e18d9b3..8598cf0 100644 --- a/man/prepareSignature.Rd +++ b/man/prepareSignature.Rd @@ -35,7 +35,7 @@ and transforms that into an L1000 signature for later processing. # Prepare an L1000 signature from a differential gene expression output inputSignature <- read.table(system.file("extdata", - "dCovid_diffexp.tsv.tar.xz", + "dCovid_diffexp.tsv", package = "drugfindR" ), header = TRUE)