Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Retrieve Pubmed IDs via API #481

Open
Bubblbu opened this issue Feb 12, 2020 · 0 comments
Open

Retrieve Pubmed IDs via API #481

Bubblbu opened this issue Feb 12, 2020 · 0 comments

Comments

@Bubblbu
Copy link

Bubblbu commented Feb 12, 2020

I am matching unstructured references to retrieve DOIs (which is related to #456).

However, I would like to access the results programmatically. I've used the bibliometric queries with the API to access matched objects including their scores which I could probably already work with to retrieve DOIs.

However, my question was about the returned PMIDs in the simpleTextQuery tool. The tool seems to return more Pubmed IDs than is available through the alternative-id field in the API results. I've also looked into the ID converter tools provided by the NCBI to get from DOIs to PMIDs, however, their data seems to be incomplete (although the web interface does return DOI + PMID).

Is there any way to access the same information (unstructured reference -> DOI + Pubmed ID) through an API endpoint?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant