Merge pull request #6 from Cytomine-ULiege/ci

Continuous integration & Dockerfile

.dockerignore

@@ -0,0 +1,5 @@
+*
+!src
+!build.gradle
+!settings.gradle
+!scripts/docker

Jenkinsfile

@@ -0,0 +1,84 @@
+node {
+    stage ('Retrieve sources') {
+        checkout([
+            $class: 'GitSCM',
+            branches: [[name: 'refs/heads/'+env.BRANCH_NAME]],
+            extensions: [[$class: 'CloneOption', noTags: false, shallow: false, depth: 0, reference: '']],
+            userRemoteConfigs: scm.userRemoteConfigs,
+        ])
+    }
+
+    stage ('Clean') {
+        sh 'rm -rf output'
+        sh 'mkdir -p output'
+    }
+
+    stage ('Compute version number') {
+        env.VERSION_NUMBER = sh(
+            script: 'scripts/ci.sh version-number ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}',
+            returnStdout: true
+        )
+        echo("Version number: ${env.VERSION_NUMBER}")
+
+        stage ('Download and cache dependencies') {
+            sh 'scripts/ci.sh dependencies ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}'
+        }
+
+        stage ('Build jar') {
+            sh 'scripts/ci.sh build-jar ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}'
+        }
+
+        stage ('Publish jar') {
+            sh 'scripts/ci.sh publish-jar ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}'
+
+            stage ('Build Docker image') {
+                sh 'scripts/ci.sh build-docker ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}'
+            }
+            stage ('Publish Docker image') {
+                withCredentials(
+                    [
+                        usernamePassword(
+                            credentialsId: 'DOCKERHUB_CREDENTIAL',
+                            usernameVariable: 'DOCKERHUB_USER',
+                            passwordVariable: 'DOCKERHUB_TOKEN'
+                        )
+                    ]
+                ) {
+                    docker.withRegistry('https://index.docker.io/v1/', 'DOCKERHUB_CREDENTIAL') {
+                        sh 'scripts/ci.sh publish-docker ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}'
+                    }
+                }
+            }
+
+            stage ('Check official release status') {
+                env.OFFICIAL_RELEASE = sh(
+                    script: 'scripts/ci.sh is-official-release ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}',
+                    returnStdout: true
+                )
+                echo("Official Release to publish on Github ? ${env.OFFICIAL_RELEASE}")
+
+                if (env.OFFICIAL_RELEASE && env.OFFICIAL_RELEASE.toBoolean()) {
+                    echo("official")
+                    stage ('Publish official release on Github') {
+                        env.GITHUB_REPO = scm.getUserRemoteConfigs()[0].getUrl().replaceFirst(/^.*?(?::\/\/.*?\/|:)(.*).git$/, '$1')
+                        withCredentials(
+                            [
+                                usernamePassword(
+                                    credentialsId: 'GITHUB_RELEASE_CREDENTIAL',
+                                    usernameVariable: 'GITHUB_RELEASE_USER',
+                                    passwordVariable: 'GITHUB_RELEASE_TOKEN'
+                                )
+                            ]
+                        ) {
+                            sh 'scripts/ci.sh publish-github'
+                        }
+                    }
+                }
+            }
+        }
+
+        stage ('Clean Docker images') {
+            sh 'scripts/ci.sh clean-docker ${NAMESPACE} docker.io bioformat ${BRANCH_NAME}'
+        }
+    }
+}

build.gradle

@@ -5,7 +5,7 @@ plugins {
 }
 
 group 'be.cytomine.bioformats'
-version '3.1.0'
+version '0.0.0'
 
 sourceCompatibility = 1.8
 
@@ -29,9 +29,9 @@ dependencies {
         exclude group: 'org.slf4j', module: 'slf4j-log4j12'
         exclude group: 'ch.qos.logback', module: 'logback-classic'
     }
-    compile group: 'org.apache.logging.log4j', name: 'log4j-api', version: '2.17.1'
-    compile group: 'org.apache.logging.log4j', name: 'log4j-core', version: '2.17.1'
-    compile('org.apache.logging.log4j:log4j-slf4j-impl:2.17.1')
+    compile group: 'org.apache.logging.log4j', name: 'log4j-api', version: '2.17.2'
+    compile group: 'org.apache.logging.log4j', name: 'log4j-core', version: '2.17.2'
+    compile('org.apache.logging.log4j:log4j-slf4j-impl:2.17.2')
     testCompile group: 'junit', name: 'junit', version: '4.12'
 }
 
@@ -58,6 +58,7 @@ run {
 }
 
 jar {
+    archiveName = 'cytomine-bioformats-wrapper.jar'
     manifest {
         attributes('Main-Class': 'be.cytomine.bioformats.BioFormatServerSocket')
     }