install-prerequisites.sh

#! /usr/bin/env bash

#
#  * Copyright (c) 2020-2021. Authors: see NOTICE file.
#  *
#  * Licensed under the Apache License, Version 2.0 (the "License");
#  * you may not use this file except in compliance with the License.
#  * You may obtain a copy of the License at
#  *
#  *      http://www.apache.org/licenses/LICENSE-2.0
#  *
#  * Unless required by applicable law or agreed to in writing, software
#  * distributed under the License is distributed on an "AS IS" BASIS,
#  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#  * See the License for the specific language governing permissions and
#  * limitations under the License.
#

# Prerequisites to install before installing the plugin itself.

# How to run this script ?
# bash install-prerequisites.sh func arg1 arg2
# Example: bash install-prerequisites.sh dependencies_before_vips

PLUGIN_NAME="pims-plugin-format-openslide"

OPENSLIDE_VERSION=3.4.1
OPENSLIDE_URL=https://github.com/openslide/openslide/releases/download

dependencies_before_vips() {
  echo "Prerequisites to install before vips for ${PLUGIN_NAME}";

  apt-get -y install --no-install-recommends --no-install-suggests \
    libcairo2-dev \
    libgdk-pixbuf2.0-dev \
    libxml2-dev \
    libsqlite3-dev \
    libtool

  cd /tmp
  wget http://archive.ubuntu.com/ubuntu/pool/main/p/pixman/libpixman-1-0_0.40.0-1build2_amd64.deb
  dpkg -i libpixman-1-0_0.40.0-1build2_amd64.deb

  cd /usr/local/src
  wget ${OPENSLIDE_URL}/v${OPENSLIDE_VERSION}/openslide-${OPENSLIDE_VERSION}.tar.gz
  tar -zxvf openslide-${OPENSLIDE_VERSION}.tar.gz
  rm -rf openslide-${OPENSLIDE_VERSION}.tar.gz
  cd openslide-${OPENSLIDE_VERSION}
  ./configure
  make
  make install
}

dependencies_before_python() {
  echo "Prerequisites to install before Python dependencies for ${PLUGIN_NAME}";
}

# Check if the function exists
if declare -f "$1" > /dev/null
then
  # call arguments verbatim
  "$@"
else
  # Show a helpful error
  echo "'$1' is not a known function name" >&2
  exit 1
fi