-
Notifications
You must be signed in to change notification settings - Fork 11
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Gene information not included in toxcast 3.3 #388
Comments
Yeah, you'll have to download the summary files locally. The data is here: Similarly, if you wanted to get the ACC stuff, you'd need to download and unzip the "ToxCast & Tox21 Data Spreadsheet for invitroDBv3.3". |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
https://github.com/USGS-R/toxEval/blob/6f3cf4feeec51b751582235c3c0943c148c7862e/R/toxEval.R#L124
Hey @ldecicco-USGS , I am looking at the
end_point_info
table associated with toxcast 3.3 I know you are working on updating this table and found a couple of issues with other columns. I noticed that this table does not have many gene's named or IDed. The table is also missing a few columns (e.g., intended_target_gene_symbol) that were in the version 3.2.Anyway, I thought I would make a note here and let me know if I can help resolve the issue. The file referenced in this post looks to be on your machine rather than being in the package files.
The text was updated successfully, but these errors were encountered: